RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 NUTM2FA1L443 756 aa22.59■■□□□ 1.21
UPF1-210ENST00000600689 NUDT16Q96DE0 195 aaKnown RBP22.59■■□□□ 1.21
UPF1-210ENST00000600689 OFD1O75665 1012 aa22.58■■□□□ 1.21
UPF1-210ENST00000600689 MRPL50Q8N5N7 158 aaKnown RBP22.58■■□□□ 1.21
UPF1-210ENST00000600689 PDCL3Q9H2J4 239 aa22.58■■□□□ 1.2
UPF1-210ENST00000600689 LMBRD1Q9NUN5 540 aa22.58■■□□□ 1.2
UPF1-210ENST00000600689 NSFL1CQ9UNZ2 370 aaKnown RBP22.58■■□□□ 1.2
UPF1-210ENST00000600689 PNPLA6Q8IY17 1366 aa22.58■■□□□ 1.2
UPF1-210ENST00000600689 PTMSP20962 102 aa22.57■■□□□ 1.2
UPF1-210ENST00000600689 PLEKHM2Q8IWE5 1019 aa22.56■■□□□ 1.2
UPF1-210ENST00000600689 ALDH1L2Q3SY69 923 aa22.56■■□□□ 1.2
UPF1-210ENST00000600689 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.56■■□□□ 1.2
UPF1-210ENST00000600689 C8orf58Q8NAV2 365 aa22.56■■□□□ 1.2
UPF1-210ENST00000600689 ATP7BP35670 1465 aa22.56■■□□□ 1.2
UPF1-210ENST00000600689 LTKP29376 864 aa22.56■■□□□ 1.2
UPF1-210ENST00000600689 KRT24Q2M2I5 525 aa22.56■■□□□ 1.2
UPF1-210ENST00000600689 TWISTNBQ3B726 338 aaPredicted RBP22.56■■□□□ 1.2
UPF1-210ENST00000600689 TMEM2Q9UHN6 1383 aa22.55■■□□□ 1.2
UPF1-210ENST00000600689 UQCRHLA0A096LP55 91 aa22.55■■□□□ 1.2
UPF1-210ENST00000600689 UQCRHP07919 91 aa22.55■■□□□ 1.2
UPF1-210ENST00000600689 GPT2Q8TD30 523 aa22.55■■□□□ 1.2
UPF1-210ENST00000600689 MBIPQ9NS73 344 aa22.55■■□□□ 1.2
UPF1-210ENST00000600689 MAP2P11137 1827 aaKnown RBP22.54■■□□□ 1.2
UPF1-210ENST00000600689 RABEP1Q15276 862 aa22.54■■□□□ 1.2
UPF1-210ENST00000600689 TSHZ3Q63HK5 1081 aa22.54■■□□□ 1.2
UPF1-210ENST00000600689 PTMAP06454 111 aaKnown RBP22.54■■□□□ 1.2
UPF1-210ENST00000600689 CPSF1Q10570 1443 aaKnown RBP22.53■■□□□ 1.2
UPF1-210ENST00000600689 RRS1Q15050 365 aaKnown RBP22.53■■□□□ 1.2
UPF1-210ENST00000600689 PRR36Q9H6K5 1346 aa22.53■■□□□ 1.2
UPF1-210ENST00000600689 ROBO2Q9HCK4 1378 aa22.53■■□□□ 1.2
UPF1-210ENST00000600689 NUCB2P80303 420 aa22.53■■□□□ 1.2
UPF1-210ENST00000600689 SLC26A8Q96RN1 970 aa22.53■■□□□ 1.2
UPF1-210ENST00000600689 IL16Q14005 1332 aa22.52■■□□□ 1.2
UPF1-210ENST00000600689 HDGFP51858 240 aaKnown RBP22.52■■□□□ 1.2
UPF1-210ENST00000600689 JARID2Q92833 1246 aaPredicted RBP22.52■■□□□ 1.2
UPF1-210ENST00000600689 CCDC61Q9Y6R9 512 aa22.52■■□□□ 1.2
UPF1-210ENST00000600689 UBR1Q8IWV7 1749 aa22.52■■□□□ 1.2
UPF1-210ENST00000600689 TMEM63CQ9P1W3 806 aa22.51■■□□□ 1.19
UPF1-210ENST00000600689 USP26Q9BXU7 913 aa22.51■■□□□ 1.19
UPF1-210ENST00000600689 PRDM10Q9NQV6 1147 aa22.51■■□□□ 1.19
UPF1-210ENST00000600689 GDPD2Q9HCC8 539 aa22.51■■□□□ 1.19
UPF1-210ENST00000600689 CPS1P31327 1500 aa22.51■■□□□ 1.19
UPF1-210ENST00000600689 LRRC7Q96NW7 1537 aa22.51■■□□□ 1.19
UPF1-210ENST00000600689 SDSP20132 328 aa22.5■■□□□ 1.19
UPF1-210ENST00000600689 EDC4Q6P2E9 1401 aaKnown RBP22.5■■□□□ 1.19
UPF1-210ENST00000600689 NCBP3Q53F19 620 aaKnown RBP22.49■■□□□ 1.19
UPF1-210ENST00000600689 DNTTIP2Q5QJE6 756 aaKnown RBP22.49■■□□□ 1.19
UPF1-210ENST00000600689 TTC22Q5TAA0 569 aa22.49■■□□□ 1.19
UPF1-210ENST00000600689 EIF2AK3Q9NZJ5 1116 aaKnown RBP22.49■■□□□ 1.19
UPF1-210ENST00000600689 FCHSD2O94868 740 aa22.49■■□□□ 1.19
UPF1-210ENST00000600689 ADAMTS13Q76LX8 1427 aa22.48■■□□□ 1.19
UPF1-210ENST00000600689 ST18O60284 1047 aa22.48■■□□□ 1.19
UPF1-210ENST00000600689 ZNF445P59923 1031 aa22.48■■□□□ 1.19
UPF1-210ENST00000600689 ZDHHC9Q9Y397 364 aa22.48■■□□□ 1.19
UPF1-210ENST00000600689 TSC1Q92574 1164 aa22.48■■□□□ 1.19
UPF1-210ENST00000600689 INTS3Q68E01 1043 aaKnown RBP22.47■■□□□ 1.19
UPF1-210ENST00000600689 NEK4P51957 841 aa22.47■■□□□ 1.19
UPF1-210ENST00000600689 NFE2L2Q16236 605 aa22.47■■□□□ 1.19
UPF1-210ENST00000600689 FAM135BQ49AJ0 1406 aa22.47■■□□□ 1.19
UPF1-210ENST00000600689 DTNBO60941 627 aa22.46■■□□□ 1.19
UPF1-210ENST00000600689 ZNF830Q96NB3 372 aaPredicted RBP22.46■■□□□ 1.19
UPF1-210ENST00000600689 TECPR2O15040 1411 aa22.46■■□□□ 1.19
UPF1-210ENST00000600689 COG3Q96JB2 828 aa22.46■■□□□ 1.19
UPF1-210ENST00000600689 NOL7Q9UMY1 257 aaKnown RBP22.46■■□□□ 1.19
UPF1-210ENST00000600689 IL13P35225 146 aa22.45■■□□□ 1.18
UPF1-210ENST00000600689 GNAI1P63096 354 aa22.45■■□□□ 1.18
UPF1-210ENST00000600689 SLC4A10Q6U841 1118 aa22.45■■□□□ 1.18
UPF1-210ENST00000600689 CHMP4BQ9H444 224 aaKnown RBP22.44■■□□□ 1.18
UPF1-210ENST00000600689 FAM177BA6PVY3 158 aa22.44■■□□□ 1.18
UPF1-210ENST00000600689 PLCB2Q00722 1185 aa22.44■■□□□ 1.18
UPF1-210ENST00000600689 CDC42BPGQ6DT37 1551 aa22.44■■□□□ 1.18
UPF1-210ENST00000600689 CASC1Q6TDU7 716 aa22.44■■□□□ 1.18
UPF1-210ENST00000600689 KNDC1Q76NI1 1749 aa22.43■■□□□ 1.18
UPF1-210ENST00000600689 SOX12O15370 315 aa22.42■■□□□ 1.18
UPF1-210ENST00000600689 SIRT1Q96EB6 747 aa22.42■■□□□ 1.18
UPF1-210ENST00000600689 API5Q9BZZ5 524 aaKnown RBP22.42■■□□□ 1.18
UPF1-210ENST00000600689 ZKSCAN5Q9Y2L8 839 aa22.42■■□□□ 1.18
UPF1-210ENST00000600689 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.42■■□□□ 1.18
UPF1-210ENST00000600689 MEIS3Q99687 375 aa22.42■■□□□ 1.18
UPF1-210ENST00000600689 DCTPP1Q9H773 170 aa22.42■■□□□ 1.18
UPF1-210ENST00000600689 C17orf53Q8N3J3 647 aaPredicted RBP22.41■■□□□ 1.18
UPF1-210ENST00000600689 ABCC4O15439 1325 aa22.41■■□□□ 1.18
UPF1-210ENST00000600689 CYP2E1P05181 493 aaPredicted RBP22.41■■□□□ 1.18
UPF1-210ENST00000600689 MIS18AQ9NYP9 233 aa22.4■■□□□ 1.18
UPF1-210ENST00000600689 PTPRUQ92729 1446 aa22.4■■□□□ 1.18
UPF1-210ENST00000600689 ACEP12821 1306 aa22.4■■□□□ 1.18
UPF1-210ENST00000600689 LRSAM1Q6UWE0 723 aa22.39■■□□□ 1.18
UPF1-210ENST00000600689 CLEC17AQ6ZS10 378 aa22.39■■□□□ 1.18
UPF1-210ENST00000600689 UPF3BQ9BZI7 483 aaKnown RBP22.39■■□□□ 1.18
UPF1-210ENST00000600689 MON2Q7Z3U7 1717 aa22.39■■□□□ 1.18
UPF1-210ENST00000600689 LARP6Q9BRS8 491 aaKnown RBP22.39■■□□□ 1.17
UPF1-210ENST00000600689 ARHGAP45Q92619 1136 aa22.38■■□□□ 1.17
UPF1-210ENST00000600689 PLEKHG1Q9ULL1 1385 aa22.38■■□□□ 1.17
UPF1-210ENST00000600689 RILPL2Q969X0 211 aa22.37■■□□□ 1.17
UPF1-210ENST00000600689 TMX3Q96JJ7 454 aa22.37■■□□□ 1.17
UPF1-210ENST00000600689 F6X3S4 739 aa22.37■■□□□ 1.17
UPF1-210ENST00000600689 IFT57Q9NWB7 429 aa22.37■■□□□ 1.17
UPF1-210ENST00000600689 EXOC6BQ9Y2D4 811 aa22.37■■□□□ 1.17
UPF1-210ENST00000600689 MCM10Q7L590 875 aa22.37■■□□□ 1.17
UPF1-210ENST00000600689 PDLIM2Q96JY6 352 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms