RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 CD2APQ9Y5K6 639 aa19.74■□□□□ 0.75
SHKBP1-208ENST00000595726 KIF3CO14782 793 aa19.71■□□□□ 0.75
SHKBP1-208ENST00000595726 SBNO2Q9Y2G9 1366 aa19.7■□□□□ 0.74
SHKBP1-208ENST00000595726 LTN1O94822 1766 aa19.7■□□□□ 0.74
SHKBP1-208ENST00000595726 IP6K1Q92551 441 aa19.7■□□□□ 0.74
SHKBP1-208ENST00000595726 ZCRB1Q8TBF4 217 aaKnown RBP19.69■□□□□ 0.74
SHKBP1-208ENST00000595726 L3MBTL2Q969R5 705 aa19.69■□□□□ 0.74
SHKBP1-208ENST00000595726 LY75O60449 1722 aa19.68■□□□□ 0.74
SHKBP1-208ENST00000595726 SMIM5Q71RC9 77 aa19.68■□□□□ 0.74
SHKBP1-208ENST00000595726 DNAJC5GQ8N7S2 189 aa19.68■□□□□ 0.74
SHKBP1-208ENST00000595726 TMC1Q8TDI8 760 aa19.68■□□□□ 0.74
SHKBP1-208ENST00000595726 DOT1LQ8TEK3 1739 aa19.68■□□□□ 0.74
SHKBP1-208ENST00000595726 SLC12A5Q9H2X9 1139 aa19.67■□□□□ 0.74
SHKBP1-208ENST00000595726 USP47Q96K76 1375 aa19.67■□□□□ 0.74
SHKBP1-208ENST00000595726 CD163L1Q9NR16 1453 aa19.67■□□□□ 0.74
SHKBP1-208ENST00000595726 MON2Q7Z3U7 1717 aa19.66■□□□□ 0.74
SHKBP1-208ENST00000595726 FBLN1P23142 703 aa19.66■□□□□ 0.74
SHKBP1-208ENST00000595726 AMIGO3Q86WK7 504 aa19.66■□□□□ 0.74
SHKBP1-208ENST00000595726 PCNTO95613 3336 aa19.66■□□□□ 0.74
SHKBP1-208ENST00000595726 IGSF1Q8N6C5 1336 aa19.66■□□□□ 0.74
SHKBP1-208ENST00000595726 APLP1P51693 650 aa19.64■□□□□ 0.73
SHKBP1-208ENST00000595726 ROCK2O75116 1388 aaKnown RBP19.62■□□□□ 0.73
SHKBP1-208ENST00000595726 HDGFL2Q7Z4V5 671 aaPredicted RBP19.62■□□□□ 0.73
SHKBP1-208ENST00000595726 USP54Q70EL1 1684 aa19.62■□□□□ 0.73
SHKBP1-208ENST00000595726 MEGF6O75095 1541 aa19.61■□□□□ 0.73
SHKBP1-208ENST00000595726 FLAD1Q8NFF5 587 aa19.61■□□□□ 0.73
SHKBP1-208ENST00000595726 MAP3K19Q56UN5 1328 aa19.6■□□□□ 0.73
SHKBP1-208ENST00000595726 CAPN15O75808 1086 aa19.6■□□□□ 0.73
SHKBP1-208ENST00000595726 PHF14O94880 888 aa19.6■□□□□ 0.73
SHKBP1-208ENST00000595726 HOXC9P31274 260 aa19.6■□□□□ 0.73
SHKBP1-208ENST00000595726 COL13A1Q5TAT6 717 aaPredicted RBP19.6■□□□□ 0.73
SHKBP1-208ENST00000595726 USHBP1Q8N6Y0 703 aa19.6■□□□□ 0.73
SHKBP1-208ENST00000595726 AMPHP49418 695 aa19.58■□□□□ 0.72
SHKBP1-208ENST00000595726 HTRA3P83110 453 aa19.58■□□□□ 0.72
SHKBP1-208ENST00000595726 NBPF6Q5VWK0 638 aa19.58■□□□□ 0.72
SHKBP1-208ENST00000595726 MPRIPQ6WCQ1 1025 aa19.58■□□□□ 0.72
SHKBP1-208ENST00000595726 NBPF4Q96M43 638 aa19.58■□□□□ 0.72
SHKBP1-208ENST00000595726 EDC4Q6P2E9 1401 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-208ENST00000595726 TOMM70O94826 608 aa19.57■□□□□ 0.72
SHKBP1-208ENST00000595726 SIN3AQ96ST3 1273 aa19.57■□□□□ 0.72
SHKBP1-208ENST00000595726 PALLDQ8WX93 1383 aa19.57■□□□□ 0.72
SHKBP1-208ENST00000595726 C5P01031 1676 aa19.56■□□□□ 0.72
SHKBP1-208ENST00000595726 FAM208AQ9UK61 1670 aaKnown RBP19.56■□□□□ 0.72
SHKBP1-208ENST00000595726 AK7Q96M32 723 aa19.56■□□□□ 0.72
SHKBP1-208ENST00000595726 NMRK2Q9NPI5 230 aa19.56■□□□□ 0.72
SHKBP1-208ENST00000595726 RGPD2P0DJD1 1756 aa19.56■□□□□ 0.72
SHKBP1-208ENST00000595726 A0A1W2PP64 1363 aa19.56■□□□□ 0.72
SHKBP1-208ENST00000595726 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.55■□□□□ 0.72
SHKBP1-208ENST00000595726 TERF2IPQ9NYB0 399 aa19.55■□□□□ 0.72
SHKBP1-208ENST00000595726 NEUROD1Q13562 356 aa19.52■□□□□ 0.72
SHKBP1-208ENST00000595726 RAPGEF4Q8WZA2 1011 aa19.52■□□□□ 0.72
SHKBP1-208ENST00000595726 COG3Q96JB2 828 aa19.52■□□□□ 0.72
SHKBP1-208ENST00000595726 RRS1Q15050 365 aaKnown RBP19.51■□□□□ 0.71
SHKBP1-208ENST00000595726 ARHGAP27Q6ZUM4 889 aa19.5■□□□□ 0.71
SHKBP1-208ENST00000595726 BCS1LQ9Y276 419 aa19.5■□□□□ 0.71
SHKBP1-208ENST00000595726 TAF1LQ8IZX4 1826 aa19.5■□□□□ 0.71
SHKBP1-208ENST00000595726 C4BP0C0L5 1744 aa19.5■□□□□ 0.71
SHKBP1-208ENST00000595726 TOGARAM1Q9Y4F4 1720 aa19.49■□□□□ 0.71
SHKBP1-208ENST00000595726 A0A0G2JLW4 131 aa19.49■□□□□ 0.71
SHKBP1-208ENST00000595726 CYP27B1O15528 508 aa19.49■□□□□ 0.71
SHKBP1-208ENST00000595726 TATP17735 454 aaPredicted RBP19.49■□□□□ 0.71
SHKBP1-208ENST00000595726 LINC00116Q8NCU8 138 aa19.49■□□□□ 0.71
SHKBP1-208ENST00000595726 PIGBQ92521 554 aa19.48■□□□□ 0.71
SHKBP1-208ENST00000595726 KLRG1Q96E93 195 aa19.48■□□□□ 0.71
SHKBP1-208ENST00000595726 CGNL1Q0VF96 1302 aa19.48■□□□□ 0.71
SHKBP1-208ENST00000595726 MMP10P09238 476 aa19.47■□□□□ 0.71
SHKBP1-208ENST00000595726 SSFA2P28290 1259 aa19.47■□□□□ 0.71
SHKBP1-208ENST00000595726 SMARCC1Q92922 1105 aaPredicted RBP19.47■□□□□ 0.71
SHKBP1-208ENST00000595726 CARD11Q9BXL7 1154 aa19.47■□□□□ 0.71
SHKBP1-208ENST00000595726 HMGB2P26583 209 aaKnown RBP19.46■□□□□ 0.71
SHKBP1-208ENST00000595726 TNS4Q8IZW8 715 aa19.46■□□□□ 0.71
SHKBP1-208ENST00000595726 JMYQ8N9B5 988 aa19.46■□□□□ 0.71
SHKBP1-208ENST00000595726 PXDNLA1KZ92 1463 aa19.46■□□□□ 0.71
SHKBP1-208ENST00000595726 PCDH11XQ9BZA7 1347 aa19.46■□□□□ 0.71
SHKBP1-208ENST00000595726 PCDH11YQ9BZA8 1340 aa19.46■□□□□ 0.71
SHKBP1-208ENST00000595726 CICQ96RK0 1608 aaPredicted RBP19.45■□□□□ 0.7
SHKBP1-208ENST00000595726 RBM46Q8TBY0 533 aaKnown RBP19.45■□□□□ 0.7
SHKBP1-208ENST00000595726 UBR3Q6ZT12 1888 aa19.45■□□□□ 0.7
SHKBP1-208ENST00000595726 LOC102724428A0A0B4J2F2 783 aa19.44■□□□□ 0.7
SHKBP1-208ENST00000595726 GNPATO15228 680 aa19.44■□□□□ 0.7
SHKBP1-208ENST00000595726 SIK1P57059 783 aa19.44■□□□□ 0.7
SHKBP1-208ENST00000595726 HSP90AB2PQ58FF8 381 aa19.44■□□□□ 0.7
SHKBP1-208ENST00000595726 ITPK1Q13572 414 aa19.43■□□□□ 0.7
SHKBP1-208ENST00000595726 WDR90Q96KV7 1748 aa19.42■□□□□ 0.7
SHKBP1-208ENST00000595726 DPEP1P16444 411 aa19.42■□□□□ 0.7
SHKBP1-208ENST00000595726 PRELPP51888 382 aa19.42■□□□□ 0.7
SHKBP1-208ENST00000595726 C9orf131Q5VYM1 1079 aa19.42■□□□□ 0.7
SHKBP1-208ENST00000595726 C16orf71Q8IYS4 520 aaPredicted RBP19.42■□□□□ 0.7
SHKBP1-208ENST00000595726 GGNBP2Q9H3C7 697 aa19.42■□□□□ 0.7
SHKBP1-208ENST00000595726 FCHSD2O94868 740 aa19.41■□□□□ 0.7
SHKBP1-208ENST00000595726 TGFB2P61812 414 aa19.41■□□□□ 0.7
SHKBP1-208ENST00000595726 ASAP1Q9ULH1 1129 aa19.41■□□□□ 0.7
SHKBP1-208ENST00000595726 N4BP2Q86UW6 1770 aaPredicted RBP19.4■□□□□ 0.7
SHKBP1-208ENST00000595726 RTL1A6NKG5 1358 aa19.4■□□□□ 0.7
SHKBP1-208ENST00000595726 NSD3Q9BZ95 1437 aa19.4■□□□□ 0.7
SHKBP1-208ENST00000595726 PUS7Q96PZ0 661 aaKnown RBP19.39■□□□□ 0.69
SHKBP1-208ENST00000595726 RRAGCQ9HB90 399 aa19.39■□□□□ 0.69
SHKBP1-208ENST00000595726 FYB1O15117 783 aa19.38■□□□□ 0.69
SHKBP1-208ENST00000595726 ITGB4P16144 1822 aa19.38■□□□□ 0.69
SHKBP1-208ENST00000595726 ATP6V1AP38606 617 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms