RNA–Protein interactions for RNA: ENST00000594973.5

SHKBP1-205, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-205ENST00000594973 ORAI2Q96SN7 254 aa21.54■■□□□ 1.04
SHKBP1-205ENST00000594973 RWDD1Q9H446 243 aaPredicted RBP21.54■■□□□ 1.04
SHKBP1-205ENST00000594973 XPCQ01831 940 aaPredicted RBP21.54■■□□□ 1.04
SHKBP1-205ENST00000594973 IGSF1Q8N6C5 1336 aa21.54■■□□□ 1.04
SHKBP1-205ENST00000594973 FAM161AQ3B820 660 aa21.52■■□□□ 1.04
SHKBP1-205ENST00000594973 ZBTB7CA1YPR0 619 aa21.52■■□□□ 1.04
SHKBP1-205ENST00000594973 KRT24Q2M2I5 525 aa21.52■■□□□ 1.04
SHKBP1-205ENST00000594973 L1TD1Q5T7N2 865 aaKnown RBP21.52■■□□□ 1.04
SHKBP1-205ENST00000594973 PROSER2Q86WR7 435 aaPredicted RBP21.52■■□□□ 1.04
SHKBP1-205ENST00000594973 KDRP35968 1356 aa21.51■■□□□ 1.03
SHKBP1-205ENST00000594973 BRPF1P55201 1214 aaPredicted RBP21.51■■□□□ 1.03
SHKBP1-205ENST00000594973 C8orf34Q49A92 452 aa21.51■■□□□ 1.03
SHKBP1-205ENST00000594973 RTF1Q92541 710 aaKnown RBP21.5■■□□□ 1.03
SHKBP1-205ENST00000594973 MARF1Q9Y4F3 1742 aaKnown RBP21.5■■□□□ 1.03
SHKBP1-205ENST00000594973 MIS18AQ9NYP9 233 aa21.5■■□□□ 1.03
SHKBP1-205ENST00000594973 CHL1O00533 1208 aa21.49■■□□□ 1.03
SHKBP1-205ENST00000594973 LMOD2Q6P5Q4 547 aa21.48■■□□□ 1.03
SHKBP1-205ENST00000594973 RRAGDQ9NQL2 400 aaPredicted RBP21.48■■□□□ 1.03
SHKBP1-205ENST00000594973 ZBTB40Q9NUA8 1239 aa21.48■■□□□ 1.03
SHKBP1-205ENST00000594973 PDZRN3Q9UPQ7 1066 aa21.48■■□□□ 1.03
SHKBP1-205ENST00000594973 USHBP1Q8N6Y0 703 aa21.47■■□□□ 1.03
SHKBP1-205ENST00000594973 ZMYND15Q9H091 742 aa21.47■■□□□ 1.03
SHKBP1-205ENST00000594973 KIF24Q5T7B8 1368 aa21.47■■□□□ 1.03
SHKBP1-205ENST00000594973 RRP9O43818 475 aaKnown RBP21.46■■□□□ 1.03
SHKBP1-205ENST00000594973 GAS2L2Q8NHY3 880 aa21.46■■□□□ 1.03
SHKBP1-205ENST00000594973 ARHGAP45Q92619 1136 aa21.46■■□□□ 1.03
SHKBP1-205ENST00000594973 CRB1P82279 1406 aa21.45■■□□□ 1.02
SHKBP1-205ENST00000594973 VSIG10Q8N0Z9 540 aa21.43■■□□□ 1.02
SHKBP1-205ENST00000594973 TSPYL4Q9UJ04 414 aa21.43■■□□□ 1.02
SHKBP1-205ENST00000594973 USP54Q70EL1 1684 aa21.43■■□□□ 1.02
SHKBP1-205ENST00000594973 HDAC1Q13547 482 aaPredicted RBP21.43■■□□□ 1.02
SHKBP1-205ENST00000594973 IP6K1Q92551 441 aa21.43■■□□□ 1.02
SHKBP1-205ENST00000594973 KCNH5Q8NCM2 988 aa21.42■■□□□ 1.02
SHKBP1-205ENST00000594973 C19orf44Q9H6X5 657 aa21.41■■□□□ 1.02
SHKBP1-205ENST00000594973 RTL1A6NKG5 1358 aa21.41■■□□□ 1.02
SHKBP1-205ENST00000594973 NWD1Q149M9 1564 aa21.41■■□□□ 1.02
SHKBP1-205ENST00000594973 ZBTB7BO15156 539 aaPredicted RBP21.41■■□□□ 1.02
SHKBP1-205ENST00000594973 C1orf115Q9H7X2 142 aa21.41■■□□□ 1.02
SHKBP1-205ENST00000594973 ABCC4O15439 1325 aa21.4■■□□□ 1.02
SHKBP1-205ENST00000594973 GNAT3A8MTJ3 354 aa21.4■■□□□ 1.02
SHKBP1-205ENST00000594973 HSP90AA2PQ14568 343 aaPredicted RBP21.4■■□□□ 1.02
SHKBP1-205ENST00000594973 API5Q9BZZ5 524 aaKnown RBP21.4■■□□□ 1.02
SHKBP1-205ENST00000594973 NFAT5O94916 1531 aa21.39■■□□□ 1.02
SHKBP1-205ENST00000594973 KIAA0232Q92628 1395 aa21.39■■□□□ 1.02
SHKBP1-205ENST00000594973 GCP02774 474 aa21.39■■□□□ 1.02
SHKBP1-205ENST00000594973 HSPA2P54652 639 aa21.39■■□□□ 1.02
SHKBP1-205ENST00000594973 LTN1O94822 1766 aa21.39■■□□□ 1.01
SHKBP1-205ENST00000594973 HAP1P54257 671 aaPredicted RBP21.39■■□□□ 1.01
SHKBP1-205ENST00000594973 NBPF6Q5VWK0 638 aa21.39■■□□□ 1.01
SHKBP1-205ENST00000594973 NBPF4Q96M43 638 aa21.39■■□□□ 1.01
SHKBP1-205ENST00000594973 KRT28Q7Z3Y7 464 aa21.38■■□□□ 1.01
SHKBP1-205ENST00000594973 CLCN1P35523 988 aa21.38■■□□□ 1.01
SHKBP1-205ENST00000594973 HSP90AA1P07900 732 aaKnown RBP21.37■■□□□ 1.01
SHKBP1-205ENST00000594973 LRRC59Q96AG4 307 aaKnown RBP21.37■■□□□ 1.01
SHKBP1-205ENST00000594973 C1orf167Q5SNV9 1468 aa21.36■■□□□ 1.01
SHKBP1-205ENST00000594973 ATF3P18847 181 aa21.36■■□□□ 1.01
SHKBP1-205ENST00000594973 TMEM94Q12767 1356 aa21.36■■□□□ 1.01
SHKBP1-205ENST00000594973 HTATSF1O43719 755 aaKnown RBP21.35■■□□□ 1.01
SHKBP1-205ENST00000594973 SLC4A2P04920 1241 aa21.35■■□□□ 1.01
SHKBP1-205ENST00000594973 IL17REQ8NFR9 667 aa21.35■■□□□ 1.01
SHKBP1-205ENST00000594973 CHMP4BQ9H444 224 aaKnown RBP21.35■■□□□ 1.01
SHKBP1-205ENST00000594973 MAP3K5Q99683 1374 aa21.35■■□□□ 1.01
SHKBP1-205ENST00000594973 SMC5Q8IY18 1101 aa21.34■■□□□ 1.01
SHKBP1-205ENST00000594973 DDX17Q92841 729 aaKnown RBP21.34■■□□□ 1.01
SHKBP1-205ENST00000594973 SEC24BO95487 1268 aa21.33■■□□□ 1
SHKBP1-205ENST00000594973 ARHGEF25Q86VW2 580 aa21.33■■□□□ 1
SHKBP1-205ENST00000594973 NAP1L5Q96NT1 182 aaPredicted RBP21.33■■□□□ 1
SHKBP1-205ENST00000594973 MSH6P52701 1360 aa21.33■■□□□ 1
SHKBP1-205ENST00000594973 VIRMAQ69YN4 1812 aaKnown RBP21.32■■□□□ 1
SHKBP1-205ENST00000594973 BECN1Q14457 450 aa21.29■■□□□ 1
SHKBP1-205ENST00000594973 NECTIN2Q92692 538 aa21.29■■□□□ 1
SHKBP1-205ENST00000594973 RGS12O14924 1447 aa21.29■■□□□ 1
SHKBP1-205ENST00000594973 G2E3Q7L622 706 aa21.29■■□□□ 1
SHKBP1-205ENST00000594973 LNPKQ9C0E8 428 aa21.29■■□□□ 1
SHKBP1-205ENST00000594973 ZC3H6P61129 1189 aaKnown RBP21.28■■□□□ 1
SHKBP1-205ENST00000594973 TAF7Q15545 349 aaPredicted RBP21.28■■□□□ 1
SHKBP1-205ENST00000594973 INTS3Q68E01 1043 aaKnown RBP21.28■■□□□ 1
SHKBP1-205ENST00000594973 SIRT2Q8IXJ6 389 aa21.28■■□□□ 1
SHKBP1-205ENST00000594973 ANKRD24Q8TF21 1146 aa21.28■■□□□ 1
SHKBP1-205ENST00000594973 AXIN2Q9Y2T1 843 aa21.28■■□□□ 1
SHKBP1-205ENST00000594973 PTPRCP08575 1304 aa21.28■■□□□ 1
SHKBP1-205ENST00000594973 NUCB1Q02818 461 aa21.28■■□□□ 1
SHKBP1-205ENST00000594973 USP19O94966 1318 aa21.28■■□□□ 1
SHKBP1-205ENST00000594973 MST1RQ04912 1400 aa21.27■■□□□ 1
SHKBP1-205ENST00000594973 LGR6Q9HBX8 967 aa21.27■□□□□ 0.99
SHKBP1-205ENST00000594973 SLIT3O75094 1523 aa21.26■□□□□ 0.99
SHKBP1-205ENST00000594973 FSD2A1L4K1 749 aa21.26■□□□□ 0.99
SHKBP1-205ENST00000594973 STRCP1A6NGW2 1772 aa21.26■□□□□ 0.99
SHKBP1-205ENST00000594973 ANKRD45Q5TZF3 282 aa21.26■□□□□ 0.99
SHKBP1-205ENST00000594973 SLC4A10Q6U841 1118 aa21.26■□□□□ 0.99
SHKBP1-205ENST00000594973 CHD1LQ86WJ1 897 aa21.26■□□□□ 0.99
SHKBP1-205ENST00000594973 STK31Q9BXU1 1019 aa21.26■□□□□ 0.99
SHKBP1-205ENST00000594973 TRPM3Q9HCF6 1732 aaPredicted RBP21.25■□□□□ 0.99
SHKBP1-205ENST00000594973 LRRC37A3O60309 1634 aa21.25■□□□□ 0.99
SHKBP1-205ENST00000594973 F6X3S4 739 aa21.25■□□□□ 0.99
SHKBP1-205ENST00000594973 ZNF530Q6P9A1 599 aaPredicted RBP21.24■□□□□ 0.99
SHKBP1-205ENST00000594973 RGPD2P0DJD1 1756 aa21.24■□□□□ 0.99
SHKBP1-205ENST00000594973 KIF1AQ12756 1690 aa21.24■□□□□ 0.99
SHKBP1-205ENST00000594973 GOLGA6L3A6NEY3 463 aa21.23■□□□□ 0.99
SHKBP1-205ENST00000594973 CADPS2Q86UW7 1296 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms