RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 ST20-MTHFSA0A0A6YYL1 179 aa13.88□□□□□ -0.19
SS18-207ENST00000577636 IP6K1Q92551 441 aa13.88□□□□□ -0.19
SS18-207ENST00000577636 NHSQ6T4R5 1651 aa13.88□□□□□ -0.19
SS18-207ENST00000577636 KIF7Q2M1P5 1343 aa13.88□□□□□ -0.19
SS18-207ENST00000577636 ABCC6O95255 1503 aa13.87□□□□□ -0.19
SS18-207ENST00000577636 FBLN1P23142 703 aa13.87□□□□□ -0.19
SS18-207ENST00000577636 CHD4Q14839 1912 aa13.87□□□□□ -0.19
SS18-207ENST00000577636 SBNO2Q9Y2G9 1366 aa13.86□□□□□ -0.19
SS18-207ENST00000577636 BTAF1O14981 1849 aa13.86□□□□□ -0.19
SS18-207ENST00000577636 AMPHP49418 695 aa13.86□□□□□ -0.19
SS18-207ENST00000577636 MSL1Q68DK7 614 aa13.86□□□□□ -0.19
SS18-207ENST00000577636 POLR3GLQ9BT43 218 aa13.86□□□□□ -0.19
SS18-207ENST00000577636 TERF2IPQ9NYB0 399 aa13.86□□□□□ -0.19
SS18-207ENST00000577636 CCNL1Q9UK58 526 aaPredicted RBP13.86□□□□□ -0.19
SS18-207ENST00000577636 ZCRB1Q8TBF4 217 aaKnown RBP13.85□□□□□ -0.19
SS18-207ENST00000577636 GRIN3BO60391 1043 aa13.84□□□□□ -0.19
SS18-207ENST00000577636 YBX3P16989 372 aaKnown RBP eCLIP13.84□□□□□ -0.19
SS18-207ENST00000577636 TMF1P82094 1093 aa13.84□□□□□ -0.19
SS18-207ENST00000577636 CDCA8Q53HL2 280 aa13.84□□□□□ -0.19
SS18-207ENST00000577636 PAPPAQ13219 1627 aa13.83□□□□□ -0.2
SS18-207ENST00000577636 CENPBP07199 599 aaPredicted RBP13.83□□□□□ -0.2
SS18-207ENST00000577636 COL23A1Q86Y22 540 aaPredicted RBP13.83□□□□□ -0.2
SS18-207ENST00000577636 COG3Q96JB2 828 aa13.83□□□□□ -0.2
SS18-207ENST00000577636 CD163L1Q9NR16 1453 aa13.82□□□□□ -0.2
SS18-207ENST00000577636 HOXC9P31274 260 aa13.82□□□□□ -0.2
SS18-207ENST00000577636 USHBP1Q8N6Y0 703 aa13.82□□□□□ -0.2
SS18-207ENST00000577636 ANKRD36BQ8N2N9 1353 aa13.82□□□□□ -0.2
SS18-207ENST00000577636 EDC4Q6P2E9 1401 aaKnown RBP13.81□□□□□ -0.2
SS18-207ENST00000577636 IFFO2Q5TF58 517 aa13.81□□□□□ -0.2
SS18-207ENST00000577636 ZNF526Q8TF50 670 aaPredicted RBP13.81□□□□□ -0.2
SS18-207ENST00000577636 MAP3K19Q56UN5 1328 aa13.81□□□□□ -0.2
SS18-207ENST00000577636 A0A1W2PP64 1363 aa13.81□□□□□ -0.2
SS18-207ENST00000577636 CCER2I3L3R5 266 aa13.8□□□□□ -0.2
SS18-207ENST00000577636 WWC3Q9ULE0 1092 aa13.8□□□□□ -0.2
SS18-207ENST00000577636 MON2Q7Z3U7 1717 aa13.8□□□□□ -0.2
SS18-207ENST00000577636 LTN1O94822 1766 aa13.8□□□□□ -0.2
SS18-207ENST00000577636 RRS1Q15050 365 aaKnown RBP13.79□□□□□ -0.2
SS18-207ENST00000577636 NBPF6Q5VWK0 638 aa13.78□□□□□ -0.2
SS18-207ENST00000577636 RAPGEF4Q8WZA2 1011 aa13.78□□□□□ -0.2
SS18-207ENST00000577636 NBPF4Q96M43 638 aa13.78□□□□□ -0.2
SS18-207ENST00000577636 GPBP1L1Q9HC44 474 aaPredicted RBP13.78□□□□□ -0.2
SS18-207ENST00000577636 NSD2O96028 1365 aa13.77□□□□□ -0.21
SS18-207ENST00000577636 TATP17735 454 aaPredicted RBP13.77□□□□□ -0.21
SS18-207ENST00000577636 MPRIPQ6WCQ1 1025 aa13.77□□□□□ -0.21
SS18-207ENST00000577636 YTHDC1Q96MU7 727 aaKnown RBP13.77□□□□□ -0.21
SS18-207ENST00000577636 SMIM5Q71RC9 77 aa13.76□□□□□ -0.21
SS18-207ENST00000577636 TESK2Q96S53 571 aa13.76□□□□□ -0.21
SS18-207ENST00000577636 ATP10DQ9P241 1426 aa13.75□□□□□ -0.21
SS18-207ENST00000577636 PHF14O94880 888 aa13.75□□□□□ -0.21
SS18-207ENST00000577636 GGNBP2Q9H3C7 697 aa13.75□□□□□ -0.21
SS18-207ENST00000577636 MEGF6O75095 1541 aa13.74□□□□□ -0.21
SS18-207ENST00000577636 FLAD1Q8NFF5 587 aa13.74□□□□□ -0.21
SS18-207ENST00000577636 AK7Q96M32 723 aa13.74□□□□□ -0.21
SS18-207ENST00000577636 PUS7Q96PZ0 661 aaKnown RBP13.74□□□□□ -0.21
SS18-207ENST00000577636 CD2APQ9Y5K6 639 aa13.74□□□□□ -0.21
SS18-207ENST00000577636 GOLGB1Q14789 3259 aaKnown RBP13.74□□□□□ -0.21
SS18-207ENST00000577636 SHANK3Q9BYB0 1731 aa13.73□□□□□ -0.21
SS18-207ENST00000577636 DOT1LQ8TEK3 1739 aa13.73□□□□□ -0.21
SS18-207ENST00000577636 TUBGCP6Q96RT7 1819 aa13.72□□□□□ -0.21
SS18-207ENST00000577636 USP54Q70EL1 1684 aa13.72□□□□□ -0.21
SS18-207ENST00000577636 PALLDQ8WX93 1383 aa13.71□□□□□ -0.21
SS18-207ENST00000577636 CGNL1Q0VF96 1302 aa13.71□□□□□ -0.21
SS18-207ENST00000577636 QSER1Q2KHR3 1735 aa13.71□□□□□ -0.21
SS18-207ENST00000577636 FYB1O15117 783 aa13.71□□□□□ -0.21
SS18-207ENST00000577636 HSP90AB2PQ58FF8 381 aa13.71□□□□□ -0.21
SS18-207ENST00000577636 IGSF1Q8N6C5 1336 aa13.7□□□□□ -0.22
SS18-207ENST00000577636 PCDH11XQ9BZA7 1347 aa13.7□□□□□ -0.22
SS18-207ENST00000577636 PCDH11YQ9BZA8 1340 aa13.7□□□□□ -0.22
SS18-207ENST00000577636 HSPA6P17066 643 aa13.7□□□□□ -0.22
SS18-207ENST00000577636 HMGB2P26583 209 aaKnown RBP13.7□□□□□ -0.22
SS18-207ENST00000577636 PRKRIP1Q9H875 184 aaPredicted RBP13.7□□□□□ -0.22
SS18-207ENST00000577636 SMG6Q86US8 1419 aaKnown RBP13.7□□□□□ -0.22
SS18-207ENST00000577636 RGPD2P0DJD1 1756 aa13.69□□□□□ -0.22
SS18-207ENST00000577636 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.69□□□□□ -0.22
SS18-207ENST00000577636 ADRA2BP18089 450 aa13.69□□□□□ -0.22
SS18-207ENST00000577636 AMIGO3Q86WK7 504 aa13.69□□□□□ -0.22
SS18-207ENST00000577636 SMARCC1Q92922 1105 aaPredicted RBP13.69□□□□□ -0.22
SS18-207ENST00000577636 LY75O60449 1722 aa13.69□□□□□ -0.22
SS18-207ENST00000577636 COL24A1Q17RW2 1714 aa13.68□□□□□ -0.22
SS18-207ENST00000577636 PPM1GO15355 546 aaPredicted RBP13.68□□□□□ -0.22
SS18-207ENST00000577636 CYP27B1O15528 508 aa13.68□□□□□ -0.22
SS18-207ENST00000577636 PIGBQ92521 554 aa13.68□□□□□ -0.22
SS18-207ENST00000577636 FAM208AQ9UK61 1670 aaKnown RBP13.67□□□□□ -0.22
SS18-207ENST00000577636 RTL1A6NKG5 1358 aa13.67□□□□□ -0.22
SS18-207ENST00000577636 RALBP1Q15311 655 aa13.66□□□□□ -0.22
SS18-207ENST00000577636 LOC102724428A0A0B4J2F2 783 aa13.65□□□□□ -0.22
SS18-207ENST00000577636 SIK1P57059 783 aa13.65□□□□□ -0.22
SS18-207ENST00000577636 LINC00116Q8NCU8 138 aa13.65□□□□□ -0.22
SS18-207ENST00000577636 KNSTRNQ9Y448 316 aa13.65□□□□□ -0.22
SS18-207ENST00000577636 INSRP06213 1382 aa13.64□□□□□ -0.23
SS18-207ENST00000577636 GNPATO15228 680 aa13.64□□□□□ -0.23
SS18-207ENST00000577636 ATP6V1AP38606 617 aa13.64□□□□□ -0.23
SS18-207ENST00000577636 PANK3Q9H999 370 aa13.64□□□□□ -0.23
SS18-207ENST00000577636 SPG7Q9UQ90 795 aa13.64□□□□□ -0.23
SS18-207ENST00000577636 EMILIN1Q9Y6C2 1016 aa13.64□□□□□ -0.23
SS18-207ENST00000577636 CEP350Q5VT06 3117 aa13.64□□□□□ -0.23
SS18-207ENST00000577636 KIF3CO14782 793 aa13.63□□□□□ -0.23
SS18-207ENST00000577636 SSFA2P28290 1259 aa13.63□□□□□ -0.23
SS18-207ENST00000577636 CNGB1Q14028 1251 aaPredicted RBP13.63□□□□□ -0.23
SS18-207ENST00000577636 PIAS4Q8N2W9 510 aaPredicted RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms