RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 FMN2Q9NZ56 1722 aa28.39■■■□□ 2.14
VPS53-211ENST00000571805 AMOTL2Q9Y2J4 779 aa28.39■■■□□ 2.14
VPS53-211ENST00000571805 PTPRCP08575 1304 aa28.39■■■□□ 2.14
VPS53-211ENST00000571805 CEBPAP49715 358 aaPredicted RBP28.39■■■□□ 2.14
VPS53-211ENST00000571805 GSPT1P15170 499 aaKnown RBP28.38■■■□□ 2.13
VPS53-211ENST00000571805 SOX12O15370 315 aa28.38■■■□□ 2.13
VPS53-211ENST00000571805 RPAP2Q8IXW5 612 aaPredicted RBP28.37■■■□□ 2.13
VPS53-211ENST00000571805 EID1Q9Y6B2 187 aa28.37■■■□□ 2.13
VPS53-211ENST00000571805 CDC45O75419 566 aa28.37■■■□□ 2.13
VPS53-211ENST00000571805 SLIT1O75093 1534 aa28.36■■■□□ 2.13
VPS53-211ENST00000571805 ARHGAP23Q9P227 1491 aa28.36■■■□□ 2.13
VPS53-211ENST00000571805 MTHFSDQ2M296 383 aaKnown RBP28.36■■■□□ 2.13
VPS53-211ENST00000571805 CEP85Q6P2H3 762 aa28.36■■■□□ 2.13
VPS53-211ENST00000571805 FOXO3O43524 673 aa28.35■■■□□ 2.13
VPS53-211ENST00000571805 TBX22Q9Y458 520 aa28.35■■■□□ 2.13
VPS53-211ENST00000571805 SBNO1A3KN83 1393 aa28.35■■■□□ 2.13
VPS53-211ENST00000571805 RTL1A6NKG5 1358 aa28.35■■■□□ 2.13
VPS53-211ENST00000571805 MSH6P52701 1360 aa28.34■■■□□ 2.13
VPS53-211ENST00000571805 RIMS1Q86UR5 1692 aaKnown RBP28.34■■■□□ 2.13
VPS53-211ENST00000571805 RGPD8O14715 1765 aaPredicted RBP28.34■■■□□ 2.13
VPS53-211ENST00000571805 FLT4P35916 1363 aa28.34■■■□□ 2.13
VPS53-211ENST00000571805 KDRP35968 1356 aa28.34■■■□□ 2.13
VPS53-211ENST00000571805 C16orf71Q8IYS4 520 aaPredicted RBP28.33■■■□□ 2.13
VPS53-211ENST00000571805 MIS18AQ9NYP9 233 aa28.33■■■□□ 2.13
VPS53-211ENST00000571805 SLC4A2P04920 1241 aa28.32■■■□□ 2.12
VPS53-211ENST00000571805 TTC22Q5TAA0 569 aa28.32■■■□□ 2.12
VPS53-211ENST00000571805 CD2BP2O95400 341 aaKnown RBP28.32■■■□□ 2.12
VPS53-211ENST00000571805 DIP2AQ14689 1571 aa28.32■■■□□ 2.12
VPS53-211ENST00000571805 MEIS3Q99687 375 aa28.31■■■□□ 2.12
VPS53-211ENST00000571805 HSP90AB1P08238 724 aaKnown RBP28.3■■■□□ 2.12
VPS53-211ENST00000571805 EYA1Q99502 592 aa28.3■■■□□ 2.12
VPS53-211ENST00000571805 CIZ1Q9ULV3 898 aaPredicted RBP28.3■■■□□ 2.12
VPS53-211ENST00000571805 IGSF1Q8N6C5 1336 aa28.29■■■□□ 2.12
VPS53-211ENST00000571805 PIK3C2AO00443 1686 aa28.29■■■□□ 2.12
VPS53-211ENST00000571805 CEP170BQ9Y4F5 1589 aaPredicted RBP28.29■■■□□ 2.12
VPS53-211ENST00000571805 TRAK2O60296 914 aa28.29■■■□□ 2.12
VPS53-211ENST00000571805 L1TD1Q5T7N2 865 aaKnown RBP28.29■■■□□ 2.12
VPS53-211ENST00000571805 NGDNQ8NEJ9 315 aaKnown RBP28.29■■■□□ 2.12
VPS53-211ENST00000571805 RBM42Q9BTD8 480 aaKnown RBP28.29■■■□□ 2.12
VPS53-211ENST00000571805 RTF1Q92541 710 aaKnown RBP28.28■■■□□ 2.12
VPS53-211ENST00000571805 TSPYL4Q9UJ04 414 aa28.28■■■□□ 2.12
VPS53-211ENST00000571805 OTUD7AQ8TE49 926 aaPredicted RBP28.27■■■□□ 2.12
VPS53-211ENST00000571805 G2E3Q7L622 706 aa28.26■■■□□ 2.12
VPS53-211ENST00000571805 K7ELQ4 463 aaPredicted RBP28.25■■■□□ 2.11
VPS53-211ENST00000571805 AMPHP49418 695 aa28.25■■■□□ 2.11
VPS53-211ENST00000571805 FSD2A1L4K1 749 aa28.25■■■□□ 2.11
VPS53-211ENST00000571805 EIF5BO60841 1220 aaKnown RBP28.25■■■□□ 2.11
VPS53-211ENST00000571805 DDX11L8A8MPP1 907 aa28.24■■■□□ 2.11
VPS53-211ENST00000571805 TNPO1Q92973 898 aaKnown RBP28.24■■■□□ 2.11
VPS53-211ENST00000571805 GAS2L2Q8NHY3 880 aa28.24■■■□□ 2.11
VPS53-211ENST00000571805 SMARCA5O60264 1052 aaPredicted RBP28.23■■■□□ 2.11
VPS53-211ENST00000571805 RAB3GAP1Q15042 981 aa28.23■■■□□ 2.11
VPS53-211ENST00000571805 GZF1Q9H116 711 aaPredicted RBP28.22■■■□□ 2.11
VPS53-211ENST00000571805 XRN1Q8IZH2 1706 aaKnown RBP28.22■■■□□ 2.11
VPS53-211ENST00000571805 HTATSF1O43719 755 aaKnown RBP28.21■■■□□ 2.11
VPS53-211ENST00000571805 F6X3S4 739 aa28.21■■■□□ 2.11
VPS53-211ENST00000571805 CCT4P50991 539 aaKnown RBP28.21■■■□□ 2.11
VPS53-211ENST00000571805 USP26Q9BXU7 913 aa28.21■■■□□ 2.11
VPS53-211ENST00000571805 LRRC37A3O60309 1634 aa28.2■■■□□ 2.11
VPS53-211ENST00000571805 SDSP20132 328 aa28.2■■■□□ 2.1
VPS53-211ENST00000571805 MARF1Q9Y4F3 1742 aaKnown RBP28.2■■■□□ 2.1
VPS53-211ENST00000571805 GOLGA6L3A6NEY3 463 aa28.19■■■□□ 2.1
VPS53-211ENST00000571805 NLRP6P59044 892 aa28.19■■■□□ 2.1
VPS53-211ENST00000571805 THEMISQ8N1K5 641 aaPredicted RBP28.19■■■□□ 2.1
VPS53-211ENST00000571805 ANKARQ7Z5J8 1434 aa28.18■■■□□ 2.1
VPS53-211ENST00000571805 APBB1O00213 710 aa28.18■■■□□ 2.1
VPS53-211ENST00000571805 PLPPR3Q6T4P5 718 aa28.18■■■□□ 2.1
VPS53-211ENST00000571805 SLC4A10Q6U841 1118 aa28.18■■■□□ 2.1
VPS53-211ENST00000571805 HMMRO75330 724 aa28.17■■■□□ 2.1
VPS53-211ENST00000571805 XRCC6P12956 609 aaKnown RBP eCLIP28.17■■■□□ 2.18e-6■■□□□ 13.6
VPS53-211ENST00000571805 NWD1Q149M9 1564 aa28.17■■■□□ 2.1
VPS53-211ENST00000571805 HSP90AA1P07900 732 aaKnown RBP28.16■■■□□ 2.1
VPS53-211ENST00000571805 RABEP1Q15276 862 aa28.16■■■□□ 2.1
VPS53-211ENST00000571805 FOXD4L1Q9NU39 408 aa28.16■■■□□ 2.1
VPS53-211ENST00000571805 HOXC9P31274 260 aa28.16■■■□□ 2.1
VPS53-211ENST00000571805 USP54Q70EL1 1684 aa28.15■■■□□ 2.1
VPS53-211ENST00000571805 GNAT3A8MTJ3 354 aa28.14■■■□□ 2.1
VPS53-211ENST00000571805 FAM43AQ8N2R8 423 aa28.14■■■□□ 2.1
VPS53-211ENST00000571805 GBP4Q96PP9 640 aa28.14■■■□□ 2.1
VPS53-211ENST00000571805 FER1L4A9Z1Z3 1794 aa28.14■■■□□ 2.1
VPS53-211ENST00000571805 STK31Q9BXU1 1019 aa28.14■■■□□ 2.09
VPS53-211ENST00000571805 OSBPL3Q9H4L5 887 aa28.14■■■□□ 2.09
VPS53-211ENST00000571805 FAM208AQ9UK61 1670 aaKnown RBP28.13■■■□□ 2.09
VPS53-211ENST00000571805 KCNA6P17658 529 aa28.12■■■□□ 2.09
VPS53-211ENST00000571805 GNAI2P04899 355 aa28.11■■■□□ 2.09
VPS53-211ENST00000571805 NUTM2GQ5VZR2 741 aa28.11■■■□□ 2.09
VPS53-211ENST00000571805 FLIIQ13045 1269 aa28.11■■■□□ 2.09
VPS53-211ENST00000571805 CCDC30Q5VVM6 783 aa28.11■■■□□ 2.09
VPS53-211ENST00000571805 IL17REQ8NFR9 667 aa28.1■■■□□ 2.09
VPS53-211ENST00000571805 CASC1Q6TDU7 716 aa28.1■■■□□ 2.09
VPS53-211ENST00000571805 CACNA1FO60840 1977 aa28.09■■■□□ 2.09
VPS53-211ENST00000571805 PDE1AP54750 535 aa28.09■■■□□ 2.09
VPS53-211ENST00000571805 MAP3K5Q99683 1374 aa28.08■■■□□ 2.09
VPS53-211ENST00000571805 CLEC17AQ6ZS10 378 aa28.08■■■□□ 2.09
VPS53-211ENST00000571805 ARXQ96QS3 562 aa28.08■■■□□ 2.09
VPS53-211ENST00000571805 SOS1Q07889 1333 aaPredicted RBP28.07■■■□□ 2.08
VPS53-211ENST00000571805 SSFA2P28290 1259 aa28.07■■■□□ 2.08
VPS53-211ENST00000571805 FKBP5Q13451 457 aaPredicted RBP28.07■■■□□ 2.08
VPS53-211ENST00000571805 ABTB2Q8N961 1025 aa28.07■■■□□ 2.08
VPS53-211ENST00000571805 BABAM1Q9NWV8 329 aa28.07■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms