RNA–Protein interactions for RNA: ENST00000561623.5

GTF3C1-202, Transcript of general transcription factor IIIC subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3C1, Length 7,015 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-202ENST00000561623 ERBINQ96RT1 1412 aa12.03□□□□□ -0.48
GTF3C1-202ENST00000561623 GTF2F1P35269 517 aaKnown RBP eCLIP12.02□□□□□ -0.48
GTF3C1-202ENST00000561623 RAPGEF4Q8WZA2 1011 aa12.02□□□□□ -0.48
GTF3C1-202ENST00000561623 SART3Q15020 963 aaKnown RBP12.02□□□□□ -0.48
GTF3C1-202ENST00000561623 PLCD3Q8N3E9 789 aa12.02□□□□□ -0.48
GTF3C1-202ENST00000561623 CCT4P50991 539 aaKnown RBP12.02□□□□□ -0.49
GTF3C1-202ENST00000561623 CFAP100Q494V2 611 aa12.02□□□□□ -0.49
GTF3C1-202ENST00000561623 NUTM1Q86Y26 1132 aa12.02□□□□□ -0.49
GTF3C1-202ENST00000561623 ERC1Q8IUD2 1116 aa12.02□□□□□ -0.49
GTF3C1-202ENST00000561623 DACH1Q9UI36 760 aa12.02□□□□□ -0.49
GTF3C1-202ENST00000561623 CASKIN1Q8WXD9 1431 aa12.02□□□□□ -0.49
GTF3C1-202ENST00000561623 CLIP2Q9UDT6 1046 aa12.02□□□□□ -0.49
GTF3C1-202ENST00000561623 DDX54Q8TDD1 881 aaKnown RBP12.01□□□□□ -0.49
GTF3C1-202ENST00000561623 CFAP45Q9UL16 551 aa12.01□□□□□ -0.49
GTF3C1-202ENST00000561623 URI1O94763 535 aaPredicted RBP12.01□□□□□ -0.49
GTF3C1-202ENST00000561623 TAX1BP1Q86VP1 789 aa12.01□□□□□ -0.49
GTF3C1-202ENST00000561623 XRCC6P12956 609 aaKnown RBP eCLIP12.01□□□□□ -0.49
GTF3C1-202ENST00000561623 ZSCAN31Q96LW9 406 aaPredicted RBP12.01□□□□□ -0.49
GTF3C1-202ENST00000561623 PPP6R1Q9UPN7 881 aa12.01□□□□□ -0.49
GTF3C1-202ENST00000561623 TXLNAP40222 546 aa12.01□□□□□ -0.49
GTF3C1-202ENST00000561623 USP8P40818 1118 aa12.01□□□□□ -0.49
GTF3C1-202ENST00000561623 WWC2Q6AWC2 1192 aa12.01□□□□□ -0.49
GTF3C1-202ENST00000561623 CKAP2LQ8IYA6 745 aa12.01□□□□□ -0.49
GTF3C1-202ENST00000561623 KIF18AQ8NI77 898 aa12.01□□□□□ -0.49
GTF3C1-202ENST00000561623 ZNF219Q9P2Y4 722 aaPredicted RBP12.01□□□□□ -0.49
GTF3C1-202ENST00000561623 ZFP91Q96JP5 570 aaPredicted RBP12.01□□□□□ -0.49
GTF3C1-202ENST00000561623 WWC3Q9ULE0 1092 aa12.01□□□□□ -0.49
GTF3C1-202ENST00000561623 DMRT2Q9Y5R5 561 aa12.01□□□□□ -0.49
GTF3C1-202ENST00000561623 ADCY5O95622 1261 aa12□□□□□ -0.49
GTF3C1-202ENST00000561623 PIP4K2AP48426 406 aaPredicted RBP12□□□□□ -0.49
GTF3C1-202ENST00000561623 AACSQ86V21 672 aa12□□□□□ -0.49
GTF3C1-202ENST00000561623 EXOC6BQ9Y2D4 811 aa12□□□□□ -0.49
GTF3C1-202ENST00000561623 ATAD2BQ9ULI0 1458 aa12□□□□□ -0.49
GTF3C1-202ENST00000561623 CDK5RAP3Q96JB5 506 aa12□□□□□ -0.49
GTF3C1-202ENST00000561623 ZNF830Q96NB3 372 aaPredicted RBP12□□□□□ -0.49
GTF3C1-202ENST00000561623 LARP6Q9BRS8 491 aaKnown RBP12□□□□□ -0.49
GTF3C1-202ENST00000561623 RAD54L2Q9Y4B4 1467 aa12□□□□□ -0.49
GTF3C1-202ENST00000561623 SFPQP23246 707 aaKnown RBP eCLIP12□□□□□ -0.49
GTF3C1-202ENST00000561623 CALCOCO1Q9P1Z2 691 aa12□□□□□ -0.49
GTF3C1-202ENST00000561623 TBC1D2BQ9UPU7 963 aa12□□□□□ -0.49
GTF3C1-202ENST00000561623 HDGFL1Q5TGJ6 251 aa12□□□□□ -0.49
GTF3C1-202ENST00000561623 SULT6B1Q6IMI4 303 aa12□□□□□ -0.49
GTF3C1-202ENST00000561623 KIAA1107Q9UPP5 1409 aa11.99□□□□□ -0.49
GTF3C1-202ENST00000561623 CLCN1P35523 988 aa11.99□□□□□ -0.49
GTF3C1-202ENST00000561623 SMTNL1A8MU46 457 aa11.99□□□□□ -0.49
GTF3C1-202ENST00000561623 RARSP54136 660 aaKnown RBP11.99□□□□□ -0.49
GTF3C1-202ENST00000561623 ARHGAP29Q52LW3 1261 aa11.99□□□□□ -0.49
GTF3C1-202ENST00000561623 TTC39AQ5SRH9 613 aa11.99□□□□□ -0.49
GTF3C1-202ENST00000561623 TANGO6Q9C0B7 1094 aa11.99□□□□□ -0.49
GTF3C1-202ENST00000561623 DYNC1I1O14576 645 aa11.99□□□□□ -0.49
GTF3C1-202ENST00000561623 ERLIN2O94905 339 aa11.99□□□□□ -0.49
GTF3C1-202ENST00000561623 SCAPERQ9BY12 1400 aa11.99□□□□□ -0.49
GTF3C1-202ENST00000561623 ENOX2Q16206 610 aaKnown RBP11.99□□□□□ -0.49
GTF3C1-202ENST00000561623 SRCIN1Q9C0H9 1055 aa11.99□□□□□ -0.49
GTF3C1-202ENST00000561623 SRGAP3O43295 1099 aa11.99□□□□□ -0.49
GTF3C1-202ENST00000561623 EPB41L2O43491 1005 aaKnown RBP11.99□□□□□ -0.49
GTF3C1-202ENST00000561623 IGHDP01880 384 aa11.99□□□□□ -0.49
GTF3C1-202ENST00000561623 CASQ1P31415 396 aa11.99□□□□□ -0.49
GTF3C1-202ENST00000561623 GAS2L2Q8NHY3 880 aa11.99□□□□□ -0.49
GTF3C1-202ENST00000561623 GIMAP7Q8NHV1 300 aa11.98□□□□□ -0.49
GTF3C1-202ENST00000561623 STAC3Q96MF2 364 aa11.98□□□□□ -0.49
GTF3C1-202ENST00000561623 FGD5Q6ZNL6 1462 aa11.98□□□□□ -0.49
GTF3C1-202ENST00000561623 BAG4O95429 457 aaKnown RBP11.98□□□□□ -0.49
GTF3C1-202ENST00000561623 ZSCAN23Q3MJ62 389 aa11.98□□□□□ -0.49
GTF3C1-202ENST00000561623 GPATCH11Q8N954 259 aa11.98□□□□□ -0.49
GTF3C1-202ENST00000561623 NEFHP12036 1026 aa11.98□□□□□ -0.49
GTF3C1-202ENST00000561623 TOM1L2Q6ZVM7 507 aa11.98□□□□□ -0.49
GTF3C1-202ENST00000561623 AQRO60306 1485 aaKnown RBP eCLIP11.98□□□□□ -0.495e-7■■■■■ 29.6
GTF3C1-202ENST00000561623 GOLGA6L7A0A1B0GV03 622 aa11.98□□□□□ -0.49
GTF3C1-202ENST00000561623 NLRP6P59044 892 aa11.97□□□□□ -0.49
GTF3C1-202ENST00000561623 PRPF40BQ6NWY9 871 aaKnown RBP11.97□□□□□ -0.49
GTF3C1-202ENST00000561623 NUP133Q8WUM0 1156 aa11.97□□□□□ -0.49
GTF3C1-202ENST00000561623 CRACR2AQ9BSW2 395 aa11.97□□□□□ -0.49
GTF3C1-202ENST00000561623 THUMPD2Q9BTF0 503 aaKnown RBP11.97□□□□□ -0.49
GTF3C1-202ENST00000561623 KIAA1328Q86T90 577 aa11.97□□□□□ -0.49
GTF3C1-202ENST00000561623 KIF2AO00139 706 aaPredicted RBP11.97□□□□□ -0.49
GTF3C1-202ENST00000561623 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.97□□□□□ -0.496e-7■■■■■ 104.5
GTF3C1-202ENST00000561623 HFM1A2PYH4 1435 aa11.97□□□□□ -0.49
GTF3C1-202ENST00000561623 SSH1Q8WYL5 1049 aa11.97□□□□□ -0.49
GTF3C1-202ENST00000561623 KRT18P05783 430 aaKnown RBP11.96□□□□□ -0.49
GTF3C1-202ENST00000561623 NKTRP30414 1462 aaKnown RBP11.96□□□□□ -0.49
GTF3C1-202ENST00000561623 TXNDC2Q86VQ3 553 aa11.96□□□□□ -0.49
GTF3C1-202ENST00000561623 TBC1D32Q96NH3 1257 aa11.96□□□□□ -0.49
GTF3C1-202ENST00000561623 CCDC69A6NI79 296 aa11.96□□□□□ -0.5
GTF3C1-202ENST00000561623 PRAM1Q96QH2 718 aa11.96□□□□□ -0.5
GTF3C1-202ENST00000561623 SHTN1A0MZ66 631 aa11.96□□□□□ -0.5
GTF3C1-202ENST00000561623 IQCEQ6IPM2 695 aa11.96□□□□□ -0.5
GTF3C1-202ENST00000561623 RPAP2Q8IXW5 612 aaPredicted RBP11.96□□□□□ -0.5
GTF3C1-202ENST00000561623 TRIM22Q8IYM9 498 aa11.96□□□□□ -0.5
GTF3C1-202ENST00000561623 STIM1Q13586 685 aa11.96□□□□□ -0.5
GTF3C1-202ENST00000561623 TMPOP42166 694 aaKnown RBP11.95□□□□□ -0.5
GTF3C1-202ENST00000561623 CCDC158Q5M9N0 1113 aa11.95□□□□□ -0.5
GTF3C1-202ENST00000561623 CCDC148Q8NFR7 591 aa11.95□□□□□ -0.5
GTF3C1-202ENST00000561623 ANKRD62A6NC57 917 aa11.95□□□□□ -0.5
GTF3C1-202ENST00000561623 ZSCAN12O43309 604 aa11.95□□□□□ -0.5
GTF3C1-202ENST00000561623 TOM1O60784 492 aa11.95□□□□□ -0.5
GTF3C1-202ENST00000561623 MX1P20591 662 aa11.95□□□□□ -0.5
GTF3C1-202ENST00000561623 IPO4Q8TEX9 1081 aaKnown RBP11.95□□□□□ -0.5
GTF3C1-202ENST00000561623 ZHX3Q9H4I2 956 aa11.95□□□□□ -0.5
GTF3C1-202ENST00000561623 MCM5P33992 734 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms