RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 RICTORQ6R327 1708 aa21.58■■□□□ 1.05
SYNE3-202ENST00000553340 ZSCAN23Q3MJ62 389 aa21.58■■□□□ 1.04
SYNE3-202ENST00000553340 CEP85Q6P2H3 762 aa21.58■■□□□ 1.04
SYNE3-202ENST00000553340 MSNP26038 577 aaKnown RBP21.57■■□□□ 1.04
SYNE3-202ENST00000553340 OTUD7AQ8TE49 926 aaPredicted RBP21.57■■□□□ 1.04
SYNE3-202ENST00000553340 REC8O95072 547 aa21.57■■□□□ 1.04
SYNE3-202ENST00000553340 ZRANB1Q9UGI0 708 aa21.57■■□□□ 1.04
SYNE3-202ENST00000553340 PKP1Q13835 747 aa21.56■■□□□ 1.04
SYNE3-202ENST00000553340 RRS1Q15050 365 aaKnown RBP21.55■■□□□ 1.04
SYNE3-202ENST00000553340 WASLO00401 505 aaPredicted RBP21.55■■□□□ 1.04
SYNE3-202ENST00000553340 RGS12O14924 1447 aa21.54■■□□□ 1.04
SYNE3-202ENST00000553340 RTL1A6NKG5 1358 aa21.53■■□□□ 1.04
SYNE3-202ENST00000553340 HS1BP3Q53T59 392 aa21.53■■□□□ 1.04
SYNE3-202ENST00000553340 PTPRCP08575 1304 aa21.53■■□□□ 1.04
SYNE3-202ENST00000553340 APBB1O00213 710 aa21.53■■□□□ 1.04
SYNE3-202ENST00000553340 SMARCA5O60264 1052 aaPredicted RBP21.53■■□□□ 1.04
SYNE3-202ENST00000553340 KIAA1211Q6ZU35 1233 aa21.53■■□□□ 1.04
SYNE3-202ENST00000553340 PRPF40AO75400 957 aaKnown RBP21.52■■□□□ 1.04
SYNE3-202ENST00000553340 ZGPATQ8N5A5 531 aaKnown RBP21.52■■□□□ 1.04
SYNE3-202ENST00000553340 MSH6P52701 1360 aa21.52■■□□□ 1.04
SYNE3-202ENST00000553340 OFD1O75665 1012 aa21.52■■□□□ 1.04
SYNE3-202ENST00000553340 ERC2O15083 957 aa21.51■■□□□ 1.03
SYNE3-202ENST00000553340 CHL1O00533 1208 aa21.51■■□□□ 1.03
SYNE3-202ENST00000553340 KRT24Q2M2I5 525 aa21.5■■□□□ 1.03
SYNE3-202ENST00000553340 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.5■■□□□ 1.03
SYNE3-202ENST00000553340 RBSNQ9H1K0 784 aa21.5■■□□□ 1.03
SYNE3-202ENST00000553340 KIAA0232Q92628 1395 aa21.5■■□□□ 1.03
SYNE3-202ENST00000553340 MEIS3Q99687 375 aa21.5■■□□□ 1.03
SYNE3-202ENST00000553340 RIMBP3CA6NJZ7 1639 aa21.49■■□□□ 1.03
SYNE3-202ENST00000553340 RIMBP3BA6NNM3 1639 aa21.49■■□□□ 1.03
SYNE3-202ENST00000553340 RIMBP3Q9UFD9 1639 aa21.49■■□□□ 1.03
SYNE3-202ENST00000553340 HMMRO75330 724 aa21.49■■□□□ 1.03
SYNE3-202ENST00000553340 PRIM1P49642 420 aaKnown RBP21.49■■□□□ 1.03
SYNE3-202ENST00000553340 NUDT16Q96DE0 195 aaKnown RBP21.49■■□□□ 1.03
SYNE3-202ENST00000553340 ZDHHC9Q9Y397 364 aa21.49■■□□□ 1.03
SYNE3-202ENST00000553340 GPT2Q8TD30 523 aa21.48■■□□□ 1.03
SYNE3-202ENST00000553340 PDLIM2Q96JY6 352 aa21.48■■□□□ 1.03
SYNE3-202ENST00000553340 CCDC61Q9Y6R9 512 aa21.48■■□□□ 1.03
SYNE3-202ENST00000553340 CPS1P31327 1500 aa21.48■■□□□ 1.03
SYNE3-202ENST00000553340 SULT6B1Q6IMI4 303 aa21.47■■□□□ 1.03
SYNE3-202ENST00000553340 SETD1AO15047 1707 aaKnown RBP21.47■■□□□ 1.03
SYNE3-202ENST00000553340 AEBP1Q8IUX7 1158 aa21.46■■□□□ 1.03
SYNE3-202ENST00000553340 OSBPL3Q9H4L5 887 aa21.46■■□□□ 1.03
SYNE3-202ENST00000553340 NOL7Q9UMY1 257 aaKnown RBP21.46■■□□□ 1.03
SYNE3-202ENST00000553340 A2ML1A8K2U0 1454 aa21.46■■□□□ 1.03
SYNE3-202ENST00000553340 MON2Q7Z3U7 1717 aa21.46■■□□□ 1.03
SYNE3-202ENST00000553340 TERF1P54274 439 aa21.45■■□□□ 1.02
SYNE3-202ENST00000553340 MCM10Q7L590 875 aa21.45■■□□□ 1.02
SYNE3-202ENST00000553340 RBM27Q9P2N5 1060 aaKnown RBP21.45■■□□□ 1.02
SYNE3-202ENST00000553340 EIF4A2Q14240 407 aaKnown RBP21.44■■□□□ 1.02
SYNE3-202ENST00000553340 SLC4A2P04920 1241 aa21.44■■□□□ 1.02
SYNE3-202ENST00000553340 PDE1AP54750 535 aa21.44■■□□□ 1.02
SYNE3-202ENST00000553340 LRSAM1Q6UWE0 723 aa21.44■■□□□ 1.02
SYNE3-202ENST00000553340 MCM2P49736 904 aa21.43■■□□□ 1.02
SYNE3-202ENST00000553340 NEK4P51957 841 aa21.43■■□□□ 1.02
SYNE3-202ENST00000553340 OSCARQ8IYS5 282 aa21.43■■□□□ 1.02
SYNE3-202ENST00000553340 NCKAP5LQ9HCH0 1330 aa21.43■■□□□ 1.02
SYNE3-202ENST00000553340 NRKQ7Z2Y5 1582 aa21.43■■□□□ 1.02
SYNE3-202ENST00000553340 VSIG10Q8N0Z9 540 aa21.43■■□□□ 1.02
SYNE3-202ENST00000553340 MBD3O95983 291 aa21.42■■□□□ 1.02
SYNE3-202ENST00000553340 PDCL3Q9H2J4 239 aa21.42■■□□□ 1.02
SYNE3-202ENST00000553340 TMEM63CQ9P1W3 806 aa21.42■■□□□ 1.02
SYNE3-202ENST00000553340 ZNF500O60304 480 aaPredicted RBP21.42■■□□□ 1.02
SYNE3-202ENST00000553340 C3P01024 1663 aa21.42■■□□□ 1.02
SYNE3-202ENST00000553340 TXNDC2Q86VQ3 553 aa21.42■■□□□ 1.02
SYNE3-202ENST00000553340 TMX3Q96JJ7 454 aa21.42■■□□□ 1.02
SYNE3-202ENST00000553340 SYCE3A1L190 88 aa21.41■■□□□ 1.02
SYNE3-202ENST00000553340 CCT4P50991 539 aaKnown RBP21.41■■□□□ 1.02
SYNE3-202ENST00000553340 MCCP23508 829 aa21.4■■□□□ 1.02
SYNE3-202ENST00000553340 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.4■■□□□ 1.02
SYNE3-202ENST00000553340 AKAP12Q02952 1782 aa21.39■■□□□ 1.02
SYNE3-202ENST00000553340 SLC4A10Q6U841 1118 aa21.39■■□□□ 1.01
SYNE3-202ENST00000553340 ITSN1Q15811 1721 aa21.39■■□□□ 1.01
SYNE3-202ENST00000553340 METP08581 1390 aa21.38■■□□□ 1.01
SYNE3-202ENST00000553340 MCM5P33992 734 aa21.38■■□□□ 1.01
SYNE3-202ENST00000553340 FOXD4L5Q5VV16 416 aaPredicted RBP21.38■■□□□ 1.01
SYNE3-202ENST00000553340 FOXD4L4Q8WXT5 416 aaPredicted RBP21.38■■□□□ 1.01
SYNE3-202ENST00000553340 CHAMP1Q96JM3 812 aa21.38■■□□□ 1.01
SYNE3-202ENST00000553340 EIF2AK3Q9NZJ5 1116 aaKnown RBP21.38■■□□□ 1.01
SYNE3-202ENST00000553340 PPP6R1Q9UPN7 881 aa21.38■■□□□ 1.01
SYNE3-202ENST00000553340 ZKSCAN5Q9Y2L8 839 aa21.38■■□□□ 1.01
SYNE3-202ENST00000553340 ESYT1Q9BSJ8 1104 aa21.38■■□□□ 1.01
SYNE3-202ENST00000553340 NSFL1CQ9UNZ2 370 aaKnown RBP21.38■■□□□ 1.01
SYNE3-202ENST00000553340 BRD1O95696 1058 aa21.37■■□□□ 1.01
SYNE3-202ENST00000553340 CRB1P82279 1406 aa21.37■■□□□ 1.01
SYNE3-202ENST00000553340 GNAI2P04899 355 aa21.37■■□□□ 1.01
SYNE3-202ENST00000553340 CUL4AQ13619 759 aa21.37■■□□□ 1.01
SYNE3-202ENST00000553340 R3HCC1Q9Y3T6 440 aaKnown RBP21.37■■□□□ 1.01
SYNE3-202ENST00000553340 SIRT1Q96EB6 747 aa21.36■■□□□ 1.01
SYNE3-202ENST00000553340 CCDC39Q9UFE4 941 aa21.36■■□□□ 1.01
SYNE3-202ENST00000553340 F6X3S4 739 aa21.36■■□□□ 1.01
SYNE3-202ENST00000553340 ANAPC15P60006 121 aa21.36■■□□□ 1.01
SYNE3-202ENST00000553340 INTS4Q96HW7 963 aaKnown RBP21.36■■□□□ 1.01
SYNE3-202ENST00000553340 EXOC6BQ9Y2D4 811 aa21.36■■□□□ 1.01
SYNE3-202ENST00000553340 SPATA31D1Q6ZQQ2 1576 aa21.35■■□□□ 1.01
SYNE3-202ENST00000553340 G2E3Q7L622 706 aa21.35■■□□□ 1.01
SYNE3-202ENST00000553340 NRXN3Q9Y4C0 1643 aa21.35■■□□□ 1.01
SYNE3-202ENST00000553340 XPCQ01831 940 aaPredicted RBP21.35■■□□□ 1.01
SYNE3-202ENST00000553340 CSPP1Q1MSJ5 1256 aa21.35■■□□□ 1.01
SYNE3-202ENST00000553340 LRRCC1Q9C099 1032 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms