RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 ZMYND15Q9H091 742 aa8.15□□□□□ -1.1
USP48-211ENST00000526044 ALG2Q9H553 416 aa8.15□□□□□ -1.1
USP48-211ENST00000526044 ZFAND3Q9H8U3 227 aa8.15□□□□□ -1.1
USP48-211ENST00000526044 ERVH48-1M5A8F1 160 aa8.14□□□□□ -1.11
USP48-211ENST00000526044 SCRIBQ14160 1630 aa8.14□□□□□ -1.11
USP48-211ENST00000526044 UNC13AQ9UPW8 1703 aa8.13□□□□□ -1.11
USP48-211ENST00000526044 POM121CA8CG34 1229 aa8.13□□□□□ -1.11
USP48-211ENST00000526044 TRAK2O60296 914 aa8.13□□□□□ -1.11
USP48-211ENST00000526044 RASSF7Q02833 373 aa8.13□□□□□ -1.11
USP48-211ENST00000526044 SLFNL1Q499Z3 407 aa8.13□□□□□ -1.11
USP48-211ENST00000526044 SHROOM4Q9ULL8 1493 aa8.13□□□□□ -1.11
USP48-211ENST00000526044 HDGFL1Q5TGJ6 251 aa8.12□□□□□ -1.11
USP48-211ENST00000526044 LINC00528Q8N1L1 170 aa8.12□□□□□ -1.11
USP48-211ENST00000526044 PHTF2Q8N3S3 785 aa8.12□□□□□ -1.11
USP48-211ENST00000526044 TMPRSS4Q9NRS4 437 aa8.12□□□□□ -1.11
USP48-211ENST00000526044 RNF135Q8IUD6 432 aa8.11□□□□□ -1.11
USP48-211ENST00000526044 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.1□□□□□ -1.112e-10■□□□□ 9.8
USP48-211ENST00000526044 ERICH6Q7L0X2 663 aa8.1□□□□□ -1.11
USP48-211ENST00000526044 C14orf37Q86TY3 774 aa8.1□□□□□ -1.11
USP48-211ENST00000526044 MEIOBQ8N635 442 aa8.1□□□□□ -1.11
USP48-211ENST00000526044 ZNF784Q8NCA9 323 aaPredicted RBP8.1□□□□□ -1.11
USP48-211ENST00000526044 CNTNAP3BQ96NU0 1288 aa8.1□□□□□ -1.11
USP48-211ENST00000526044 TSEN34Q9BSV6 310 aaKnown RBP8.1□□□□□ -1.11
USP48-211ENST00000526044 CNTNAP3Q9BZ76 1288 aa8.1□□□□□ -1.11
USP48-211ENST00000526044 ADAMTS8Q9UP79 889 aa8.1□□□□□ -1.11
USP48-211ENST00000526044 PCDHB11Q9Y5F2 797 aa8.1□□□□□ -1.11
USP48-211ENST00000526044 ADAMTS19Q8TE59 1207 aa8.09□□□□□ -1.11
USP48-211ENST00000526044 SOS2Q07890 1332 aaPredicted RBP8.08□□□□□ -1.12
USP48-211ENST00000526044 LILRA1O75019 489 aa8.08□□□□□ -1.12
USP48-211ENST00000526044 GSK3AP49840 483 aa8.08□□□□□ -1.12
USP48-211ENST00000526044 CBLBQ13191 982 aa8.08□□□□□ -1.12
USP48-211ENST00000526044 Q6ZVU0 165 aa8.08□□□□□ -1.12
USP48-211ENST00000526044 GLMNQ92990 594 aa8.08□□□□□ -1.12
USP48-211ENST00000526044 CCDC85AQ96PX6 553 aaPredicted RBP8.08□□□□□ -1.12
USP48-211ENST00000526044 ESF1Q9H501 851 aaKnown RBP8.08□□□□□ -1.12
USP48-211ENST00000526044 CYLDQ9NQC7 956 aa8.08□□□□□ -1.12
USP48-211ENST00000526044 CHIC2Q9UKJ5 165 aa8.08□□□□□ -1.12
USP48-211ENST00000526044 ZNF777Q9ULD5 760 aaPredicted RBP8.08□□□□□ -1.12
USP48-211ENST00000526044 ERVK-9P63128 1117 aa8.07□□□□□ -1.12
USP48-211ENST00000526044 MAP7D1Q3KQU3 841 aa8.07□□□□□ -1.12
USP48-211ENST00000526044 TSGA10IPQ3SY00 556 aa8.07□□□□□ -1.12
USP48-211ENST00000526044 CC2D2BQ6DHV5 1058 aa8.07□□□□□ -1.12
USP48-211ENST00000526044 CALR3Q96L12 384 aaKnown RBP8.07□□□□□ -1.12
USP48-211ENST00000526044 DNMT3LQ9UJW3 386 aa8.07□□□□□ -1.12
USP48-211ENST00000526044 DOLKQ9UPQ8 538 aa8.07□□□□□ -1.12
USP48-211ENST00000526044 TTLL8A6PVC2 850 aa8.06□□□□□ -1.12
USP48-211ENST00000526044 ADD1P35611 737 aaKnown RBP8.06□□□□□ -1.12
USP48-211ENST00000526044 SVOPQ8N4V2 548 aa8.06□□□□□ -1.12
USP48-211ENST00000526044 NFATC2IPQ8NCF5 419 aa8.06□□□□□ -1.12
USP48-211ENST00000526044 CDCA7Q9BWT1 371 aaPredicted RBP8.06□□□□□ -1.12
USP48-211ENST00000526044 PIK3CDO00329 1044 aa8.05□□□□□ -1.12
USP48-211ENST00000526044 MYCP01106 439 aaPredicted RBP8.05□□□□□ -1.12
USP48-211ENST00000526044 SKIP12755 728 aa8.05□□□□□ -1.12
USP48-211ENST00000526044 USP4Q13107 963 aa8.05□□□□□ -1.12
USP48-211ENST00000526044 PLPP7Q8NBV4 271 aa8.05□□□□□ -1.12
USP48-211ENST00000526044 COL25A1Q9BXS0 654 aaPredicted RBP8.05□□□□□ -1.12
USP48-211ENST00000526044 IGHA1P01876 353 aa8.04□□□□□ -1.12
USP48-211ENST00000526044 ADH1AP07327 375 aa8.04□□□□□ -1.12
USP48-211ENST00000526044 SCTRP47872 440 aa8.04□□□□□ -1.12
USP48-211ENST00000526044 GPR161Q8N6U8 529 aaKnown RBP8.04□□□□□ -1.12
USP48-211ENST00000526044 SIRT1Q96EB6 747 aa8.04□□□□□ -1.12
USP48-211ENST00000526044 BICRAQ9NZM4 1560 aa8.03□□□□□ -1.12
USP48-211ENST00000526044 LZTS3O60299 673 aaPredicted RBP8.03□□□□□ -1.12
USP48-211ENST00000526044 MARSP56192 900 aaKnown RBP8.03□□□□□ -1.12
USP48-211ENST00000526044 PTSQ03393 145 aa8.03□□□□□ -1.12
USP48-211ENST00000526044 OXLD1Q5BKU9 147 aa8.03□□□□□ -1.12
USP48-211ENST00000526044 AGBL1Q96MI9 1066 aa8.03□□□□□ -1.12
USP48-211ENST00000526044 RELBQ01201 579 aa8.02□□□□□ -1.13
USP48-211ENST00000526044 KRT76Q01546 638 aa8.02□□□□□ -1.13
USP48-211ENST00000526044 CYP2U1Q7Z449 544 aa8.02□□□□□ -1.13
USP48-211ENST00000526044 NANOS1Q8WY41 292 aaKnown RBP8.02□□□□□ -1.13
USP48-211ENST00000526044 UCN2Q96RP3 112 aa8.02□□□□□ -1.13
USP48-211ENST00000526044 DNMT3AQ9Y6K1 912 aaPredicted RBP8.02□□□□□ -1.13
USP48-211ENST00000526044 FIGNL2A6NMB9 653 aa8.01□□□□□ -1.13
USP48-211ENST00000526044 ATP5J2-PTCD1G3V325 749 aa8.01□□□□□ -1.13
USP48-211ENST00000526044 PTGIRP43119 386 aa8.01□□□□□ -1.13
USP48-211ENST00000526044 FOXK2Q01167 660 aa8.01□□□□□ -1.13
USP48-211ENST00000526044 GPAT2Q6NUI2 795 aa8.01□□□□□ -1.13
USP48-211ENST00000526044 TBC1D9Q6ZT07 1266 aa8.01□□□□□ -1.13
USP48-211ENST00000526044 OSBPL3Q9H4L5 887 aa8.01□□□□□ -1.13
USP48-211ENST00000526044 SPINT1O43278 529 aa8□□□□□ -1.13
USP48-211ENST00000526044 ATP9BO43861 1147 aa8□□□□□ -1.13
USP48-211ENST00000526044 IRS1P35568 1242 aa8□□□□□ -1.13
USP48-211ENST00000526044 EML3Q32P44 896 aa8□□□□□ -1.13
USP48-211ENST00000526044 ZNF385CQ66K41 422 aaPredicted RBP8□□□□□ -1.13
USP48-211ENST00000526044 KANK3Q6NY19 840 aa8□□□□□ -1.13
USP48-211ENST00000526044 CCDC155Q8N6L0 562 aa8□□□□□ -1.13
USP48-211ENST00000526044 KDF1Q8NAX2 398 aaPredicted RBP8□□□□□ -1.13
USP48-211ENST00000526044 SCARF2Q96GP6 870 aaPredicted RBP8□□□□□ -1.13
USP48-211ENST00000526044 ZNF395Q9H8N7 513 aaPredicted RBP8□□□□□ -1.13
USP48-211ENST00000526044 TFIP11Q9UBB9 837 aaKnown RBP8□□□□□ -1.13
USP48-211ENST00000526044 USP17L5A8MUK1 530 aa7.99□□□□□ -1.13
USP48-211ENST00000526044 PPP1R12CQ9BZL4 782 aa7.99□□□□□ -1.13
USP48-211ENST00000526044 NOD1Q9Y239 953 aa7.99□□□□□ -1.13
USP48-211ENST00000526044 CDC14CA4D256 554 aa7.98□□□□□ -1.13
USP48-211ENST00000526044 PALM3A6NDB9 673 aaPredicted RBP7.98□□□□□ -1.13
USP48-211ENST00000526044 GNRH1P01148 92 aa7.98□□□□□ -1.13
USP48-211ENST00000526044 NCOA4Q13772 614 aa7.98□□□□□ -1.13
USP48-211ENST00000526044 SV2AQ7L0J3 742 aa7.98□□□□□ -1.13
USP48-211ENST00000526044 PLEKHM2Q8IWE5 1019 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms