RNA–Protein interactions for RNA: ENST00000480102.1

PTCD3-213, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-213ENST00000480102 RDH13Q8NBN7 331 aa7.24□□□□□ -1.25
PTCD3-213ENST00000480102 CEP152O94986 1710 aa7.24□□□□□ -1.25
PTCD3-213ENST00000480102 ANKRD30BQ9BXX2 1392 aa7.23□□□□□ -1.25
PTCD3-213ENST00000480102 RAB3GAP2Q9H2M9 1393 aa7.23□□□□□ -1.25
PTCD3-213ENST00000480102 E9PCH4 1651 aa7.23□□□□□ -1.25
PTCD3-213ENST00000480102 COPS2P61201 443 aa7.23□□□□□ -1.25
PTCD3-213ENST00000480102 MDM2Q00987 491 aaPredicted RBP7.23□□□□□ -1.25
PTCD3-213ENST00000480102 CCDC144AA2RUR9 1427 aa7.23□□□□□ -1.25
PTCD3-213ENST00000480102 SPATA31E1Q6ZUB1 1445 aa7.23□□□□□ -1.25
PTCD3-213ENST00000480102 ZNF335Q9H4Z2 1342 aaPredicted RBP7.23□□□□□ -1.25
PTCD3-213ENST00000480102 SETBP1Q9Y6X0 1596 aa7.22□□□□□ -1.25
PTCD3-213ENST00000480102 ADAMTS13Q76LX8 1427 aa7.22□□□□□ -1.25
PTCD3-213ENST00000480102 PRKCSHP14314 528 aaPredicted RBP7.22□□□□□ -1.25
PTCD3-213ENST00000480102 TPRNQ4KMQ1 711 aa7.22□□□□□ -1.25
PTCD3-213ENST00000480102 BLOC1S3Q6QNY0 202 aa7.22□□□□□ -1.25
PTCD3-213ENST00000480102 ZNF516Q92618 1163 aa7.22□□□□□ -1.25
PTCD3-213ENST00000480102 CLCN1P35523 988 aa7.21□□□□□ -1.26
PTCD3-213ENST00000480102 TRIM52Q96A61 297 aa7.21□□□□□ -1.26
PTCD3-213ENST00000480102 GPCPD1Q9NPB8 672 aa7.21□□□□□ -1.26
PTCD3-213ENST00000480102 IQGAP1P46940 1657 aa7.21□□□□□ -1.26
PTCD3-213ENST00000480102 NWD1Q149M9 1564 aa7.2□□□□□ -1.26
PTCD3-213ENST00000480102 DCCP43146 1447 aa7.2□□□□□ -1.26
PTCD3-213ENST00000480102 ZPR1O75312 459 aa7.2□□□□□ -1.26
PTCD3-213ENST00000480102 CD46P15529 392 aa7.2□□□□□ -1.26
PTCD3-213ENST00000480102 GCGRP47871 477 aa7.2□□□□□ -1.26
PTCD3-213ENST00000480102 SIRT1Q96EB6 747 aa7.2□□□□□ -1.26
PTCD3-213ENST00000480102 TMUB1Q9BVT8 246 aa7.2□□□□□ -1.26
PTCD3-213ENST00000480102 LRRC7Q96NW7 1537 aa7.2□□□□□ -1.26
PTCD3-213ENST00000480102 NRXN1Q9ULB1 1477 aa7.19□□□□□ -1.26
PTCD3-213ENST00000480102 POLR1AO95602 1720 aaPredicted RBP7.19□□□□□ -1.26
PTCD3-213ENST00000480102 TOM1O60784 492 aa7.19□□□□□ -1.26
PTCD3-213ENST00000480102 PPP1R15AO75807 674 aaPredicted RBP7.19□□□□□ -1.26
PTCD3-213ENST00000480102 AMHR2Q16671 573 aa7.19□□□□□ -1.26
PTCD3-213ENST00000480102 TECPR2O15040 1411 aa7.18□□□□□ -1.26
PTCD3-213ENST00000480102 PTCH1Q13635 1447 aa7.18□□□□□ -1.26
PTCD3-213ENST00000480102 FAM135BQ49AJ0 1406 aa7.18□□□□□ -1.26
PTCD3-213ENST00000480102 NEXMIFQ5QGS0 1516 aa7.18□□□□□ -1.26
PTCD3-213ENST00000480102 FUT2Q10981 343 aa7.18□□□□□ -1.26
PTCD3-213ENST00000480102 NKX2-3Q8TAU0 364 aa7.18□□□□□ -1.26
PTCD3-213ENST00000480102 FAM217BQ9NTX9 383 aaPredicted RBP7.18□□□□□ -1.26
PTCD3-213ENST00000480102 MYOM2P54296 1465 aa7.17□□□□□ -1.26
PTCD3-213ENST00000480102 NR1I2O75469 434 aa7.17□□□□□ -1.26
PTCD3-213ENST00000480102 PUS10Q3MIT2 529 aaKnown RBP7.17□□□□□ -1.26
PTCD3-213ENST00000480102 AK7Q96M32 723 aa7.17□□□□□ -1.26
PTCD3-213ENST00000480102 REPIN1Q9BWE0 567 aaKnown RBP7.17□□□□□ -1.26
PTCD3-213ENST00000480102 SPHKAPQ2M3C7 1700 aa7.17□□□□□ -1.26
PTCD3-213ENST00000480102 PIK3C2GO75747 1445 aa7.17□□□□□ -1.26
PTCD3-213ENST00000480102 TLL1O43897 1013 aa7.16□□□□□ -1.26
PTCD3-213ENST00000480102 RGS20O76081 388 aa7.16□□□□□ -1.26
PTCD3-213ENST00000480102 ATP6V1AP38606 617 aa7.16□□□□□ -1.26
PTCD3-213ENST00000480102 TTLL12Q14166 644 aaPredicted RBP7.16□□□□□ -1.26
PTCD3-213ENST00000480102 MORN1Q5T089 497 aa7.16□□□□□ -1.26
PTCD3-213ENST00000480102 C19orf44Q9H6X5 657 aa7.16□□□□□ -1.26
PTCD3-213ENST00000480102 TMEM94Q12767 1356 aa7.16□□□□□ -1.26
PTCD3-213ENST00000480102 ABCC11Q96J66 1382 aa7.16□□□□□ -1.26
PTCD3-213ENST00000480102 CLTCL1P53675 1640 aa7.16□□□□□ -1.26
PTCD3-213ENST00000480102 TRIM66O15016 1216 aa7.15□□□□□ -1.26
PTCD3-213ENST00000480102 TRIM26Q12899 539 aaPredicted RBP7.15□□□□□ -1.26
PTCD3-213ENST00000480102 ZNF326Q5BKZ1 582 aaKnown RBP7.15□□□□□ -1.26
PTCD3-213ENST00000480102 PPP1R18Q6NYC8 613 aa7.15□□□□□ -1.26
PTCD3-213ENST00000480102 SLC26A8Q96RN1 970 aa7.15□□□□□ -1.26
PTCD3-213ENST00000480102 C14orf93Q9H972 538 aaKnown RBP7.15□□□□□ -1.26
PTCD3-213ENST00000480102 SLC24A3Q9HC58 644 aa7.15□□□□□ -1.26
PTCD3-213ENST00000480102 MSH6P52701 1360 aa7.15□□□□□ -1.26
PTCD3-213ENST00000480102 GIGYF2Q6Y7W6 1299 aaKnown RBP7.14□□□□□ -1.27
PTCD3-213ENST00000480102 SCUBE3Q8IX30 993 aa7.14□□□□□ -1.27
PTCD3-213ENST00000480102 PARP9Q8IXQ6 854 aa7.14□□□□□ -1.27
PTCD3-213ENST00000480102 CLSPNQ9HAW4 1339 aa7.14□□□□□ -1.27
PTCD3-213ENST00000480102 AMOTL2Q9Y2J4 779 aa7.14□□□□□ -1.27
PTCD3-213ENST00000480102 METP08581 1390 aa7.13□□□□□ -1.27
PTCD3-213ENST00000480102 LRPPRCP42704 1394 aaKnown RBP7.13□□□□□ -1.27
PTCD3-213ENST00000480102 UBAP1LF5GYI3 381 aa7.13□□□□□ -1.27
PTCD3-213ENST00000480102 KDM4AO75164 1064 aa7.13□□□□□ -1.27
PTCD3-213ENST00000480102 ADH1BP00325 375 aa7.13□□□□□ -1.27
PTCD3-213ENST00000480102 GRIPAP1Q4V328 841 aa7.13□□□□□ -1.27
PTCD3-213ENST00000480102 PROSER2Q86WR7 435 aaPredicted RBP7.13□□□□□ -1.27
PTCD3-213ENST00000480102 PTPRUQ92729 1446 aa7.12□□□□□ -1.27
PTCD3-213ENST00000480102 ADGRL3Q9HAR2 1447 aa7.12□□□□□ -1.27
PTCD3-213ENST00000480102 SSTR3P32745 418 aaPredicted RBP7.12□□□□□ -1.27
PTCD3-213ENST00000480102 GGCXP38435 758 aa7.12□□□□□ -1.27
PTCD3-213ENST00000480102 USP46P62068 366 aa7.12□□□□□ -1.27
PTCD3-213ENST00000480102 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.12□□□□□ -1.27
PTCD3-213ENST00000480102 SLC27A5Q9Y2P5 690 aa7.12□□□□□ -1.27
PTCD3-213ENST00000480102 ALKQ9UM73 1620 aa7.12□□□□□ -1.27
PTCD3-213ENST00000480102 NRXN3Q9Y4C0 1643 aa7.12□□□□□ -1.27
PTCD3-213ENST00000480102 ADGRF5Q8IZF2 1346 aa7.11□□□□□ -1.27
PTCD3-213ENST00000480102 TIMELESSQ9UNS1 1208 aa7.11□□□□□ -1.27
PTCD3-213ENST00000480102 XRN1Q8IZH2 1706 aaKnown RBP7.1□□□□□ -1.27
PTCD3-213ENST00000480102 DHX57Q6P158 1386 aaKnown RBP7.1□□□□□ -1.27
PTCD3-213ENST00000480102 HOXA2O43364 376 aa7.1□□□□□ -1.27
PTCD3-213ENST00000480102 PDE4DQ08499 809 aa7.1□□□□□ -1.27
PTCD3-213ENST00000480102 THAP11Q96EK4 314 aa7.1□□□□□ -1.27
PTCD3-213ENST00000480102 SPSB2Q99619 263 aa7.1□□□□□ -1.27
PTCD3-213ENST00000480102 SLAIN2Q9P270 581 aa7.1□□□□□ -1.27
PTCD3-213ENST00000480102 SALL2Q9Y467 1007 aaPredicted RBP7.1□□□□□ -1.27
PTCD3-213ENST00000480102 DLC1Q96QB1 1528 aa7.1□□□□□ -1.27
PTCD3-213ENST00000480102 ROBO2Q9HCK4 1378 aa7.09□□□□□ -1.27
PTCD3-213ENST00000480102 FMNL1O95466 1100 aaPredicted RBP7.09□□□□□ -1.27
PTCD3-213ENST00000480102 S1PR4O95977 384 aa7.09□□□□□ -1.27
PTCD3-213ENST00000480102 ATF3P18847 181 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms