RNA–Protein interactions for RNA: ENST00000454612.6

DDR1-240, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene DDR1, Length 3,942 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-240ENST00000454612 TBC1D9Q6ZT07 1266 aa13.71□□□□□ -0.21
DDR1-240ENST00000454612 SETBP1Q9Y6X0 1596 aa13.71□□□□□ -0.21
DDR1-240ENST00000454612 SSFA2P28290 1259 aa13.71□□□□□ -0.21
DDR1-240ENST00000454612 ANKRD36BQ8N2N9 1353 aa13.71□□□□□ -0.21
DDR1-240ENST00000454612 PPLO60437 1756 aa13.71□□□□□ -0.21
DDR1-240ENST00000454612 CDC45O75419 566 aa13.71□□□□□ -0.21
DDR1-240ENST00000454612 FOSBP53539 338 aa13.71□□□□□ -0.21
DDR1-240ENST00000454612 KIAA1211Q6ZU35 1233 aa13.71□□□□□ -0.21
DDR1-240ENST00000454612 NUTM1Q86Y26 1132 aa13.71□□□□□ -0.21
DDR1-240ENST00000454612 FAM13BQ9NYF5 915 aa13.71□□□□□ -0.21
DDR1-240ENST00000454612 PTPRMP28827 1452 aa13.71□□□□□ -0.22
DDR1-240ENST00000454612 PRPF40AO75400 957 aaKnown RBP13.71□□□□□ -0.22
DDR1-240ENST00000454612 ESCO1Q5FWF5 840 aa13.71□□□□□ -0.22
DDR1-240ENST00000454612 CHAMP1Q96JM3 812 aa13.71□□□□□ -0.22
DDR1-240ENST00000454612 MYO3AQ8NEV4 1616 aa13.7□□□□□ -0.22
DDR1-240ENST00000454612 VAMP4O75379 141 aa13.7□□□□□ -0.22
DDR1-240ENST00000454612 TULP4Q9NRJ4 1543 aa13.7□□□□□ -0.22
DDR1-240ENST00000454612 MSNP26038 577 aaKnown RBP13.7□□□□□ -0.22
DDR1-240ENST00000454612 ST18O60284 1047 aa13.7□□□□□ -0.22
DDR1-240ENST00000454612 CCDC27Q2M243 656 aa13.69□□□□□ -0.22
DDR1-240ENST00000454612 JARID2Q92833 1246 aaPredicted RBP13.69□□□□□ -0.22
DDR1-240ENST00000454612 SHPRHQ149N8 1683 aa13.69□□□□□ -0.22
DDR1-240ENST00000454612 USP19O94966 1318 aa13.69□□□□□ -0.22
DDR1-240ENST00000454612 YTHDC2Q9H6S0 1430 aaKnown RBP13.69□□□□□ -0.22
DDR1-240ENST00000454612 SIL1Q9H173 461 aa13.69□□□□□ -0.22
DDR1-240ENST00000454612 C9orf78Q9NZ63 289 aaPredicted RBP13.69□□□□□ -0.22
DDR1-240ENST00000454612 ACEP12821 1306 aa13.68□□□□□ -0.22
DDR1-240ENST00000454612 MCCP23508 829 aa13.68□□□□□ -0.22
DDR1-240ENST00000454612 G2E3Q7L622 706 aa13.68□□□□□ -0.22
DDR1-240ENST00000454612 ZBTB40Q9NUA8 1239 aa13.68□□□□□ -0.22
DDR1-240ENST00000454612 IQSEC2Q5JU85 1478 aa13.68□□□□□ -0.22
DDR1-240ENST00000454612 AMOTL2Q9Y2J4 779 aa13.68□□□□□ -0.22
DDR1-240ENST00000454612 ZFYVE9O95405 1425 aa13.67□□□□□ -0.22
DDR1-240ENST00000454612 HDGFL1Q5TGJ6 251 aa13.67□□□□□ -0.22
DDR1-240ENST00000454612 TNPO1Q92973 898 aaKnown RBP13.67□□□□□ -0.22
DDR1-240ENST00000454612 GDPD2Q9HCC8 539 aa13.67□□□□□ -0.22
DDR1-240ENST00000454612 DDX11L8A8MPP1 907 aa13.67□□□□□ -0.22
DDR1-240ENST00000454612 RRAGDQ9NQL2 400 aaPredicted RBP13.67□□□□□ -0.22
DDR1-240ENST00000454612 METP08581 1390 aa13.66□□□□□ -0.22
DDR1-240ENST00000454612 ZC3H6P61129 1189 aaKnown RBP13.66□□□□□ -0.22
DDR1-240ENST00000454612 INTS3Q68E01 1043 aaKnown RBP13.66□□□□□ -0.22
DDR1-240ENST00000454612 PLEKHF1Q96S99 279 aa13.66□□□□□ -0.22
DDR1-240ENST00000454612 EIF4A2Q14240 407 aaKnown RBP13.66□□□□□ -0.22
DDR1-240ENST00000454612 UBTFL1P0CB47 393 aaPredicted RBP13.65□□□□□ -0.22
DDR1-240ENST00000454612 PIP4K2AP48426 406 aaPredicted RBP13.65□□□□□ -0.22
DDR1-240ENST00000454612 GCC1Q96CN9 775 aa13.65□□□□□ -0.22
DDR1-240ENST00000454612 MRPL50Q8N5N7 158 aaKnown RBP13.65□□□□□ -0.22
DDR1-240ENST00000454612 CEP170BQ9Y4F5 1589 aaPredicted RBP13.65□□□□□ -0.22
DDR1-240ENST00000454612 PPFIA3O75145 1194 aa13.65□□□□□ -0.22
DDR1-240ENST00000454612 SETD1BQ9UPS6 1966 aaKnown RBP13.65□□□□□ -0.22
DDR1-240ENST00000454612 PLEKHG1Q9ULL1 1385 aa13.65□□□□□ -0.23
DDR1-240ENST00000454612 ALKQ9UM73 1620 aa13.64□□□□□ -0.23
DDR1-240ENST00000454612 KDM4AO75164 1064 aa13.64□□□□□ -0.23
DDR1-240ENST00000454612 RBM10P98175 930 aaKnown RBP13.64□□□□□ -0.23
DDR1-240ENST00000454612 MPRIPQ6WCQ1 1025 aa13.64□□□□□ -0.23
DDR1-240ENST00000454612 CFAP44Q96MT7 982 aa13.64□□□□□ -0.23
DDR1-240ENST00000454612 K7ELQ4 463 aaPredicted RBP13.64□□□□□ -0.23
DDR1-240ENST00000454612 RRP9O43818 475 aaKnown RBP13.64□□□□□ -0.23
DDR1-240ENST00000454612 MYL6BP14649 208 aa13.64□□□□□ -0.23
DDR1-240ENST00000454612 NUCB1Q02818 461 aa13.64□□□□□ -0.23
DDR1-240ENST00000454612 NLRP2Q9NX02 1062 aa13.64□□□□□ -0.23
DDR1-240ENST00000454612 KDM4FA0A1W2PPD8 638 aa13.63□□□□□ -0.23
DDR1-240ENST00000454612 NINLQ9Y2I6 1382 aa13.63□□□□□ -0.23
DDR1-240ENST00000454612 ADAMTSL3P82987 1691 aa13.63□□□□□ -0.23
DDR1-240ENST00000454612 PUS7Q96PZ0 661 aaKnown RBP13.63□□□□□ -0.23
DDR1-240ENST00000454612 ABCC11Q96J66 1382 aa13.63□□□□□ -0.23
DDR1-240ENST00000454612 UBR1Q8IWV7 1749 aa13.63□□□□□ -0.23
DDR1-240ENST00000454612 PDE4CQ08493 712 aa13.63□□□□□ -0.23
DDR1-240ENST00000454612 LRRFIP2Q9Y608 721 aaKnown RBP13.63□□□□□ -0.23
DDR1-240ENST00000454612 ZBTB7BO15156 539 aaPredicted RBP13.62□□□□□ -0.23
DDR1-240ENST00000454612 REC8O95072 547 aa13.62□□□□□ -0.23
DDR1-240ENST00000454612 GAS2L2Q8NHY3 880 aa13.62□□□□□ -0.23
DDR1-240ENST00000454612 IFT57Q9NWB7 429 aa13.62□□□□□ -0.23
DDR1-240ENST00000454612 TBX22Q9Y458 520 aa13.62□□□□□ -0.23
DDR1-240ENST00000454612 VPS37CA5D8V6 355 aaPredicted RBP13.62□□□□□ -0.23
DDR1-240ENST00000454612 GNAI2P04899 355 aa13.62□□□□□ -0.23
DDR1-240ENST00000454612 FBXW7Q969H0 707 aa13.62□□□□□ -0.23
DDR1-240ENST00000454612 RBM27Q9P2N5 1060 aaKnown RBP13.62□□□□□ -0.23
DDR1-240ENST00000454612 NSD2O96028 1365 aa13.62□□□□□ -0.23
DDR1-240ENST00000454612 SRGAP3O43295 1099 aa13.61□□□□□ -0.23
DDR1-240ENST00000454612 XRCC6P12956 609 aaKnown RBP eCLIP13.61□□□□□ -0.23
DDR1-240ENST00000454612 MTHFSDQ2M296 383 aaKnown RBP13.61□□□□□ -0.23
DDR1-240ENST00000454612 CD2BP2O95400 341 aaKnown RBP13.61□□□□□ -0.23
DDR1-240ENST00000454612 C1orf141Q5JVX7 400 aa13.61□□□□□ -0.23
DDR1-240ENST00000454612 CWC27Q6UX04 472 aaKnown RBP13.61□□□□□ -0.23
DDR1-240ENST00000454612 GOLGA6L4A6NEF3 574 aa13.61□□□□□ -0.23
DDR1-240ENST00000454612 SDSP20132 328 aa13.61□□□□□ -0.23
DDR1-240ENST00000454612 ARHGEF28Q8N1W1 1705 aaKnown RBP13.6□□□□□ -0.23
DDR1-240ENST00000454612 CT47B1P0C2W7 299 aaPredicted RBP13.6□□□□□ -0.23
DDR1-240ENST00000454612 KCNA6P17658 529 aa13.6□□□□□ -0.23
DDR1-240ENST00000454612 SMC5Q8IY18 1101 aa13.6□□□□□ -0.23
DDR1-240ENST00000454612 ZGPATQ8N5A5 531 aaKnown RBP13.6□□□□□ -0.23
DDR1-240ENST00000454612 CCDC85AQ96PX6 553 aaPredicted RBP13.6□□□□□ -0.23
DDR1-240ENST00000454612 ZNF692Q9BU19 519 aaPredicted RBP13.6□□□□□ -0.23
DDR1-240ENST00000454612 GRPEL1Q9HAV7 217 aa13.6□□□□□ -0.23
DDR1-240ENST00000454612 DIAPH3Q9NSV4 1193 aa13.6□□□□□ -0.23
DDR1-240ENST00000454612 HDAC1Q13547 482 aaPredicted RBP13.6□□□□□ -0.23
DDR1-240ENST00000454612 ALDH1L2Q3SY69 923 aa13.6□□□□□ -0.23
DDR1-240ENST00000454612 ZNF530Q6P9A1 599 aaPredicted RBP13.59□□□□□ -0.23
DDR1-240ENST00000454612 LRRC59Q96AG4 307 aaKnown RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms