RNA–Protein interactions for RNA: ENST00000439247.2

PCNX3-202, Transcript of pecanex 3, humanhuman

TSL 1 (best)

Gene PCNX3, Length 3,104 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX3-202ENST00000439247 OTUD7AQ8TE49 926 aaPredicted RBP16.74■□□□□ 0.27
PCNX3-202ENST00000439247 NSFL1CQ9UNZ2 370 aaKnown RBP16.74■□□□□ 0.27
PCNX3-202ENST00000439247 TECPR2O15040 1411 aa16.74■□□□□ 0.27
PCNX3-202ENST00000439247 APBB1O00213 710 aa16.74■□□□□ 0.27
PCNX3-202ENST00000439247 HMOX1P09601 288 aa16.73■□□□□ 0.27
PCNX3-202ENST00000439247 KCNA6P17658 529 aa16.73■□□□□ 0.27
PCNX3-202ENST00000439247 GPT2Q8TD30 523 aa16.73■□□□□ 0.27
PCNX3-202ENST00000439247 CPS1P31327 1500 aa16.73■□□□□ 0.27
PCNX3-202ENST00000439247 FYB1O15117 783 aa16.73■□□□□ 0.27
PCNX3-202ENST00000439247 CDC45O75419 566 aa16.73■□□□□ 0.27
PCNX3-202ENST00000439247 GCC1Q96CN9 775 aa16.73■□□□□ 0.27
PCNX3-202ENST00000439247 PHACTR3Q96KR7 559 aa16.72■□□□□ 0.27
PCNX3-202ENST00000439247 PTMSP20962 102 aa16.72■□□□□ 0.27
PCNX3-202ENST00000439247 PRKAR2BP31323 418 aa16.72■□□□□ 0.27
PCNX3-202ENST00000439247 NUTM2FA1L443 756 aa16.72■□□□□ 0.27
PCNX3-202ENST00000439247 DIAPH1O60610 1272 aaKnown RBP16.72■□□□□ 0.27
PCNX3-202ENST00000439247 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.72■□□□□ 0.27
PCNX3-202ENST00000439247 KNDC1Q76NI1 1749 aa16.72■□□□□ 0.27
PCNX3-202ENST00000439247 MRPL50Q8N5N7 158 aaKnown RBP16.72■□□□□ 0.27
PCNX3-202ENST00000439247 VAMP4O75379 141 aa16.71■□□□□ 0.27
PCNX3-202ENST00000439247 ZNF445P59923 1031 aa16.71■□□□□ 0.27
PCNX3-202ENST00000439247 ALDH1L2Q3SY69 923 aa16.71■□□□□ 0.27
PCNX3-202ENST00000439247 CLEC17AQ6ZS10 378 aa16.71■□□□□ 0.27
PCNX3-202ENST00000439247 MPNDQ8N594 471 aa16.71■□□□□ 0.27
PCNX3-202ENST00000439247 COL3A1P02461 1466 aaPredicted RBP16.71■□□□□ 0.27
PCNX3-202ENST00000439247 PLEKHM2Q8IWE5 1019 aa16.71■□□□□ 0.27
PCNX3-202ENST00000439247 RNF214Q8ND24 703 aa16.71■□□□□ 0.27
PCNX3-202ENST00000439247 USP32Q8NFA0 1604 aa16.71■□□□□ 0.27
PCNX3-202ENST00000439247 IL16Q14005 1332 aa16.71■□□□□ 0.26
PCNX3-202ENST00000439247 FAM135BQ49AJ0 1406 aa16.7■□□□□ 0.26
PCNX3-202ENST00000439247 UQCRHLA0A096LP55 91 aa16.7■□□□□ 0.26
PCNX3-202ENST00000439247 UQCRHP07919 91 aa16.7■□□□□ 0.26
PCNX3-202ENST00000439247 ZDHHC9Q9Y397 364 aa16.7■□□□□ 0.26
PCNX3-202ENST00000439247 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.7■□□□□ 0.26
PCNX3-202ENST00000439247 NPHP4O75161 1426 aaPredicted RBP16.7■□□□□ 0.26
PCNX3-202ENST00000439247 SYCE3A1L190 88 aa16.7■□□□□ 0.26
PCNX3-202ENST00000439247 JARID2Q92833 1246 aaPredicted RBP16.7■□□□□ 0.26
PCNX3-202ENST00000439247 SMARCA5O60264 1052 aaPredicted RBP16.69■□□□□ 0.26
PCNX3-202ENST00000439247 CYP2E1P05181 493 aaPredicted RBP16.69■□□□□ 0.26
PCNX3-202ENST00000439247 TMEM63CQ9P1W3 806 aa16.69■□□□□ 0.26
PCNX3-202ENST00000439247 NOL7Q9UMY1 257 aaKnown RBP16.69■□□□□ 0.26
PCNX3-202ENST00000439247 WASLO00401 505 aaPredicted RBP16.68■□□□□ 0.26
PCNX3-202ENST00000439247 KLHL34Q8N239 644 aa16.68■□□□□ 0.26
PCNX3-202ENST00000439247 USP26Q9BXU7 913 aa16.68■□□□□ 0.26
PCNX3-202ENST00000439247 IBTKQ9P2D0 1353 aaPredicted RBP16.68■□□□□ 0.26
PCNX3-202ENST00000439247 DIP2AQ14689 1571 aa16.68■□□□□ 0.26
PCNX3-202ENST00000439247 CABP1Q9NZU7 370 aa16.68■□□□□ 0.26
PCNX3-202ENST00000439247 NSD2O96028 1365 aa16.67■□□□□ 0.26
PCNX3-202ENST00000439247 RABEP1Q15276 862 aa16.67■□□□□ 0.26
PCNX3-202ENST00000439247 SIRT1Q96EB6 747 aa16.67■□□□□ 0.26
PCNX3-202ENST00000439247 FOXD4L6Q3SYB3 417 aaPredicted RBP16.67■□□□□ 0.26
PCNX3-202ENST00000439247 FOXD4L3Q6VB84 417 aaPredicted RBP16.67■□□□□ 0.26
PCNX3-202ENST00000439247 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.67■□□□□ 0.26
PCNX3-202ENST00000439247 PDLIM2Q96JY6 352 aa16.67■□□□□ 0.26
PCNX3-202ENST00000439247 C8orf58Q8NAV2 365 aa16.66■□□□□ 0.26
PCNX3-202ENST00000439247 XRN1Q8IZH2 1706 aaKnown RBP16.66■□□□□ 0.26
PCNX3-202ENST00000439247 NUCB2P80303 420 aa16.65■□□□□ 0.26
PCNX3-202ENST00000439247 MBIPQ9NS73 344 aa16.65■□□□□ 0.26
PCNX3-202ENST00000439247 PRR36Q9H6K5 1346 aa16.65■□□□□ 0.26
PCNX3-202ENST00000439247 LMTK3Q96Q04 1460 aa16.65■□□□□ 0.26
PCNX3-202ENST00000439247 TTC22Q5TAA0 569 aa16.65■□□□□ 0.26
PCNX3-202ENST00000439247 FAM83GA6ND36 823 aa16.65■□□□□ 0.26
PCNX3-202ENST00000439247 CD163L1Q9NR16 1453 aa16.64■□□□□ 0.25
PCNX3-202ENST00000439247 DCTN1Q14203 1278 aa16.64■□□□□ 0.25
PCNX3-202ENST00000439247 TPRNQ4KMQ1 711 aa16.64■□□□□ 0.25
PCNX3-202ENST00000439247 PRDM10Q9NQV6 1147 aa16.64■□□□□ 0.25
PCNX3-202ENST00000439247 PTCH1Q13635 1447 aa16.64■□□□□ 0.25
PCNX3-202ENST00000439247 ZNF500O60304 480 aaPredicted RBP16.64■□□□□ 0.25
PCNX3-202ENST00000439247 NOL8Q76FK4 1167 aaKnown RBP16.64■□□□□ 0.25
PCNX3-202ENST00000439247 PUS7Q96PZ0 661 aaKnown RBP16.64■□□□□ 0.25
PCNX3-202ENST00000439247 ZKSCAN5Q9Y2L8 839 aa16.64■□□□□ 0.25
PCNX3-202ENST00000439247 SDSP20132 328 aa16.63■□□□□ 0.25
PCNX3-202ENST00000439247 TSC1Q92574 1164 aa16.63■□□□□ 0.25
PCNX3-202ENST00000439247 PRDM4Q9UKN5 801 aa16.63■□□□□ 0.25
PCNX3-202ENST00000439247 NUDT16Q96DE0 195 aaKnown RBP16.63■□□□□ 0.25
PCNX3-202ENST00000439247 LRRC7Q96NW7 1537 aa16.63■□□□□ 0.25
PCNX3-202ENST00000439247 ABCC4O15439 1325 aa16.63■□□□□ 0.25
PCNX3-202ENST00000439247 TWISTNBQ3B726 338 aaPredicted RBP16.63■□□□□ 0.25
PCNX3-202ENST00000439247 KRT24Q2M2I5 525 aa16.62■□□□□ 0.25
PCNX3-202ENST00000439247 CHD2O14647 1828 aaKnown RBP16.62■□□□□ 0.25
PCNX3-202ENST00000439247 PIK3R4Q99570 1358 aa16.61■□□□□ 0.25
PCNX3-202ENST00000439247 FCHSD2O94868 740 aa16.61■□□□□ 0.25
PCNX3-202ENST00000439247 LRSAM1Q6UWE0 723 aa16.61■□□□□ 0.25
PCNX3-202ENST00000439247 DCTPP1Q9H773 170 aa16.6■□□□□ 0.25
PCNX3-202ENST00000439247 BRPF1P55201 1214 aaPredicted RBP16.6■□□□□ 0.25
PCNX3-202ENST00000439247 TSHZ3Q63HK5 1081 aa16.6■□□□□ 0.25
PCNX3-202ENST00000439247 ZNF830Q96NB3 372 aaPredicted RBP16.6■□□□□ 0.25
PCNX3-202ENST00000439247 GDPD2Q9HCC8 539 aa16.6■□□□□ 0.25
PCNX3-202ENST00000439247 ATP7BP35670 1465 aa16.6■□□□□ 0.25
PCNX3-202ENST00000439247 NFE2L2Q16236 605 aa16.59■□□□□ 0.25
PCNX3-202ENST00000439247 HS1BP3Q53T59 392 aa16.59■□□□□ 0.25
PCNX3-202ENST00000439247 POLKQ9UBT6 870 aa16.59■□□□□ 0.25
PCNX3-202ENST00000439247 INTS3Q68E01 1043 aaKnown RBP16.59■□□□□ 0.25
PCNX3-202ENST00000439247 ARHGAP45Q92619 1136 aa16.59■□□□□ 0.25
PCNX3-202ENST00000439247 PODXL2Q9NZ53 605 aa16.59■□□□□ 0.25
PCNX3-202ENST00000439247 EMILIN1Q9Y6C2 1016 aa16.59■□□□□ 0.25
PCNX3-202ENST00000439247 TERF2IPQ9NYB0 399 aa16.59■□□□□ 0.25
PCNX3-202ENST00000439247 FAM177BA6PVY3 158 aa16.58■□□□□ 0.24
PCNX3-202ENST00000439247 ST18O60284 1047 aa16.58■□□□□ 0.24
PCNX3-202ENST00000439247 TERF1P54274 439 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms