RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 SNX21Q969T3 373 aa13.01□□□□□ -0.33
CD44-210ENST00000434472 SLKQ9H2G2 1235 aaPredicted RBP13.01□□□□□ -0.33
CD44-210ENST00000434472 DCTPP1Q9H773 170 aa13.01□□□□□ -0.33
CD44-210ENST00000434472 C1orf115Q9H7X2 142 aa13.01□□□□□ -0.33
CD44-210ENST00000434472 CHMP5Q9NZZ3 219 aa13.01□□□□□ -0.33
CD44-210ENST00000434472 FMN2Q9NZ56 1722 aa13.01□□□□□ -0.33
CD44-210ENST00000434472 XRN1Q8IZH2 1706 aaKnown RBP13□□□□□ -0.33
CD44-210ENST00000434472 KDRP35968 1356 aa13□□□□□ -0.33
CD44-210ENST00000434472 AMPHP49418 695 aa13□□□□□ -0.33
CD44-210ENST00000434472 MCM10Q7L590 875 aa13□□□□□ -0.33
CD44-210ENST00000434472 ANKRD44Q8N8A2 993 aa13□□□□□ -0.33
CD44-210ENST00000434472 FER1L4A9Z1Z3 1794 aa13□□□□□ -0.33
CD44-210ENST00000434472 SOS1Q07889 1333 aaPredicted RBP12.99□□□□□ -0.33
CD44-210ENST00000434472 IGSF1Q8N6C5 1336 aa12.99□□□□□ -0.33
CD44-210ENST00000434472 CDC45O75419 566 aa12.99□□□□□ -0.33
CD44-210ENST00000434472 RGS12O14924 1447 aa12.98□□□□□ -0.33
CD44-210ENST00000434472 USP54Q70EL1 1684 aa12.98□□□□□ -0.33
CD44-210ENST00000434472 CCT4P50991 539 aaKnown RBP12.97□□□□□ -0.33
CD44-210ENST00000434472 MTHFSDQ2M296 383 aaKnown RBP12.97□□□□□ -0.33
CD44-210ENST00000434472 AEBP2Q6ZN18 517 aaPredicted RBP12.97□□□□□ -0.33
CD44-210ENST00000434472 BABAM1Q9NWV8 329 aa12.97□□□□□ -0.33
CD44-210ENST00000434472 TSPYL4Q9UJ04 414 aa12.97□□□□□ -0.33
CD44-210ENST00000434472 RTL1A6NKG5 1358 aa12.97□□□□□ -0.33
CD44-210ENST00000434472 HMMRO75330 724 aa12.96□□□□□ -0.33
CD44-210ENST00000434472 EYA1Q99502 592 aa12.96□□□□□ -0.33
CD44-210ENST00000434472 PIK3C2AO00443 1686 aa12.95□□□□□ -0.34
CD44-210ENST00000434472 SOX12O15370 315 aa12.95□□□□□ -0.34
CD44-210ENST00000434472 SLC4A2P04920 1241 aa12.95□□□□□ -0.34
CD44-210ENST00000434472 NLRP6P59044 892 aa12.95□□□□□ -0.34
CD44-210ENST00000434472 CEP85Q6P2H3 762 aa12.95□□□□□ -0.34
CD44-210ENST00000434472 TBC1D9Q6ZT07 1266 aa12.95□□□□□ -0.34
CD44-210ENST00000434472 CIZ1Q9ULV3 898 aaPredicted RBP12.95□□□□□ -0.34
CD44-210ENST00000434472 NCOA3Q9Y6Q9 1424 aa12.95□□□□□ -0.34
CD44-210ENST00000434472 PLEKHM2Q8IWE5 1019 aa12.95□□□□□ -0.34
CD44-210ENST00000434472 STK31Q9BXU1 1019 aa12.95□□□□□ -0.34
CD44-210ENST00000434472 ATP10DQ9P241 1426 aa12.95□□□□□ -0.34
CD44-210ENST00000434472 KRT24Q2M2I5 525 aa12.94□□□□□ -0.34
CD44-210ENST00000434472 TTC22Q5TAA0 569 aa12.94□□□□□ -0.34
CD44-210ENST00000434472 MSH6P52701 1360 aa12.94□□□□□ -0.34
CD44-210ENST00000434472 GNAT3A8MTJ3 354 aa12.93□□□□□ -0.34
CD44-210ENST00000434472 HSP90AB1P08238 724 aaKnown RBP12.93□□□□□ -0.34
CD44-210ENST00000434472 HOXC9P31274 260 aa12.93□□□□□ -0.34
CD44-210ENST00000434472 MCM4P33991 863 aa12.93□□□□□ -0.34
CD44-210ENST00000434472 L1TD1Q5T7N2 865 aaKnown RBP12.93□□□□□ -0.34
CD44-210ENST00000434472 PLPPR3Q6T4P5 718 aa12.93□□□□□ -0.34
CD44-210ENST00000434472 CASC1Q6TDU7 716 aa12.93□□□□□ -0.34
CD44-210ENST00000434472 LRRC37A3O60309 1634 aa12.93□□□□□ -0.34
CD44-210ENST00000434472 CCDC30Q5VVM6 783 aa12.92□□□□□ -0.34
CD44-210ENST00000434472 CEP170BQ9Y4F5 1589 aaPredicted RBP12.92□□□□□ -0.34
CD44-210ENST00000434472 RGPD8O14715 1765 aaPredicted RBP12.92□□□□□ -0.34
CD44-210ENST00000434472 FOXO3O43524 673 aa12.91□□□□□ -0.34
CD44-210ENST00000434472 KCNA6P17658 529 aa12.91□□□□□ -0.34
CD44-210ENST00000434472 PTMSP20962 102 aa12.91□□□□□ -0.34
CD44-210ENST00000434472 CHMP4AQ9BY43 222 aa12.91□□□□□ -0.34
CD44-210ENST00000434472 MAP3K5Q99683 1374 aa12.91□□□□□ -0.34
CD44-210ENST00000434472 DDX11L8A8MPP1 907 aa12.91□□□□□ -0.34
CD44-210ENST00000434472 GNAI2P04899 355 aa12.9□□□□□ -0.34
CD44-210ENST00000434472 GNAI3P08754 354 aa12.9□□□□□ -0.34
CD44-210ENST00000434472 GSPT1P15170 499 aaKnown RBP12.9□□□□□ -0.34
CD44-210ENST00000434472 DDIT3P35638 169 aa12.9□□□□□ -0.34
CD44-210ENST00000434472 ABTB2Q8N961 1025 aa12.9□□□□□ -0.34
CD44-210ENST00000434472 SPRYD3Q8NCJ5 442 aa12.9□□□□□ -0.34
CD44-210ENST00000434472 MEIS3Q99687 375 aa12.9□□□□□ -0.34
CD44-210ENST00000434472 RABEP1Q15276 862 aa12.89□□□□□ -0.35
CD44-210ENST00000434472 KIF2CQ99661 725 aa12.89□□□□□ -0.35
CD44-210ENST00000434472 MIS18AQ9NYP9 233 aa12.89□□□□□ -0.35
CD44-210ENST00000434472 PHF8Q9UPP1 1060 aa12.89□□□□□ -0.35
CD44-210ENST00000434472 K7ELQ4 463 aaPredicted RBP12.88□□□□□ -0.35
CD44-210ENST00000434472 TAF7Q15545 349 aaPredicted RBP12.88□□□□□ -0.35
CD44-210ENST00000434472 ANKLE2Q86XL3 938 aa12.88□□□□□ -0.35
CD44-210ENST00000434472 NWD1Q149M9 1564 aa12.88□□□□□ -0.35
CD44-210ENST00000434472 MARF1Q9Y4F3 1742 aaKnown RBP12.88□□□□□ -0.35
CD44-210ENST00000434472 PXDNLA1KZ92 1463 aa12.88□□□□□ -0.35
CD44-210ENST00000434472 SLC4A10Q6U841 1118 aa12.88□□□□□ -0.35
CD44-210ENST00000434472 G2E3Q7L622 706 aa12.88□□□□□ -0.35
CD44-210ENST00000434472 GBP4Q96PP9 640 aa12.88□□□□□ -0.35
CD44-210ENST00000434472 OSBPL3Q9H4L5 887 aa12.88□□□□□ -0.35
CD44-210ENST00000434472 HSP90AA1P07900 732 aaKnown RBP12.87□□□□□ -0.35
CD44-210ENST00000434472 FLIIQ13045 1269 aa12.87□□□□□ -0.35
CD44-210ENST00000434472 IP6K1Q92551 441 aa12.87□□□□□ -0.35
CD44-210ENST00000434472 C16orf71Q8IYS4 520 aaPredicted RBP12.86□□□□□ -0.35
CD44-210ENST00000434472 KCNH5Q8NCM2 988 aa12.86□□□□□ -0.35
CD44-210ENST00000434472 FAM208AQ9UK61 1670 aaKnown RBP12.86□□□□□ -0.35
CD44-210ENST00000434472 CHD2O14647 1828 aaKnown RBP12.85□□□□□ -0.35
CD44-210ENST00000434472 REC8O95072 547 aa12.85□□□□□ -0.35
CD44-210ENST00000434472 ATP8B2P98198 1209 aa12.85□□□□□ -0.35
CD44-210ENST00000434472 FKBP5Q13451 457 aaPredicted RBP12.85□□□□□ -0.35
CD44-210ENST00000434472 RAB3GAP1Q15042 981 aa12.85□□□□□ -0.35
CD44-210ENST00000434472 USP26Q9BXU7 913 aa12.85□□□□□ -0.35
CD44-210ENST00000434472 CACNA1FO60840 1977 aa12.85□□□□□ -0.35
CD44-210ENST00000434472 F6X3S4 739 aa12.84□□□□□ -0.35
CD44-210ENST00000434472 TRAK2O60296 914 aa12.84□□□□□ -0.35
CD44-210ENST00000434472 SDSP20132 328 aa12.84□□□□□ -0.35
CD44-210ENST00000434472 SKOR2Q2VWA4 1001 aaPredicted RBP12.84□□□□□ -0.35
CD44-210ENST00000434472 IL17REQ8NFR9 667 aa12.84□□□□□ -0.35
CD44-210ENST00000434472 ZNF142P52746 1687 aaPredicted RBP12.84□□□□□ -0.35
CD44-210ENST00000434472 ADGRL3Q9HAR2 1447 aa12.84□□□□□ -0.35
CD44-210ENST00000434472 SMARCA5O60264 1052 aaPredicted RBP12.84□□□□□ -0.35
CD44-210ENST00000434472 HOXB7P09629 217 aa12.84□□□□□ -0.35
CD44-210ENST00000434472 NUTM2GQ5VZR2 741 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 378 ms