RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 IGSF1Q8N6C5 1336 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 CARD10Q9BWT7 1032 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 THEGQ9P2T0 379 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 SRPK3Q9UPE1 567 aa3.58□□□□□ -1.84
CCDC88A-205ENST00000426576 MYBBP1AQ9BQG0 1328 aaKnown RBP3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 VGFO15240 615 aaPredicted RBP3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 KCNJ6P48051 423 aa3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 LRRC69Q6ZNQ3 347 aa3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 MBIPQ9NS73 344 aa3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 ZMYND8Q9ULU4 1186 aaPredicted RBP3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 AMOTL2Q9Y2J4 779 aa3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 ANKRD30BQ9BXX2 1392 aa3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 NBPF26B4DH59 902 aa3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 TMF1P82094 1093 aa3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 NBPF12Q5TAG4 269 aaPredicted RBP3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 CIAPIN1Q6FI81 312 aa3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 TTLL6Q8N841 843 aa3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 MTUS2Q5JR59 1369 aa3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 MEI4A8MW99 385 aa3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 ID4P47928 161 aa3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 TNIP1Q15025 636 aa3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 REM2Q8IYK8 340 aaPredicted RBP3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 HS6ST3Q8IZP7 471 aa3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 SUPT20HQ8NEM7 779 aa3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 MAFAQ8NHW3 353 aaPredicted RBP3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 HOOK2Q96ED9 719 aa3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 TRIM47Q96LD4 638 aa3.57□□□□□ -1.84
CCDC88A-205ENST00000426576 TAF1CQ15572 869 aaPredicted RBP3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 HDGFL2Q7Z4V5 671 aaPredicted RBP3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 RAB11FIP4Q86YS3 637 aa3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 C7orf61Q8IZ16 206 aa3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 SYNE4Q8N205 404 aa3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 CPLX3Q8WVH0 158 aa3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 ZFYVE28Q9HCC9 887 aa3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 CREBZFQ9NS37 354 aa3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 ERBB3P21860 1342 aa3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 WDR33Q9C0J8 1336 aaKnown RBP3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 FOXN1O15353 648 aa3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 TJAP1Q5JTD0 557 aa3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 LDHDQ86WU2 507 aa3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 TMOD3Q9NYL9 352 aa3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 PCDHB9Q9Y5E1 797 aa3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 CNTLNQ9NXG0 1405 aa3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 RIF1Q5UIP0 2472 aaKnown RBP3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 PALM3A6NDB9 673 aaPredicted RBP3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 ABCB7O75027 752 aa3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 RAG1P15918 1043 aa3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 CYP4F22Q6NT55 531 aa3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 CEP68Q76N32 757 aa3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 C2CD5Q86YS7 1000 aa3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 CNTROBQ8N137 903 aa3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 FTOQ9C0B1 505 aaKnown RBP eCLIP3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 MPHOSPH10O00566 681 aaKnown RBP3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 EFCAB14O75071 495 aa3.56□□□□□ -1.84
CCDC88A-205ENST00000426576 UQCRHLA0A096LP55 91 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 POTEIP0CG38 1075 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 POTEJP0CG39 1038 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 PYGBP11216 843 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 TNNI2P48788 182 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 MAP1SQ66K74 1059 aaPredicted RBP3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 KRT26Q7Z3Y9 468 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 TSHZ2Q9NRE2 1034 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 PHF8Q9UPP1 1060 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 CHMP3Q9Y3E7 222 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 CD2APQ9Y5K6 639 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 RPRD2Q5VT52 1461 aaKnown RBP3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 ENO4A6NNW6 628 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 KBTBD13C9JR72 458 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 TNFRSF10AO00220 468 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 TLR3O15455 904 aaKnown RBP3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 PRR29P0C7W0 189 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 ACTN1P12814 892 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 RTF1Q92541 710 aaKnown RBP3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 RTN4Q9NQC3 1192 aaKnown RBP3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 PTPRMP28827 1452 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 ATP5J2-PTCD1G3V325 749 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 PPIP5K2O43314 1243 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 GFRA3O60609 400 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 MAP2K2P36507 400 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 VPS53Q5VIR6 699 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 ENGASEQ8NFI3 743 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 CEP131Q9UPN4 1083 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 KDM2AQ9Y2K7 1162 aa3.55□□□□□ -1.84
CCDC88A-205ENST00000426576 MAP3K12Q12852 859 aa3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 CDC37L1Q7L3B6 337 aa3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 KIAA0100Q14667 2235 aaKnown RBP3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 MYO18BQ8IUG5 2567 aa3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 MRPS5P82675 430 aaKnown RBP3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 IKQ13123 557 aaPredicted RBP3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 EPHA10Q5JZY3 1008 aa3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 KIAA0319Q5VV43 1072 aa3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 AMOTL1Q8IY63 956 aa3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 EIF2AK3Q9NZJ5 1116 aaKnown RBP3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 PLEKHG2Q9H7P9 1386 aa3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 BDP1A6H8Y1 2624 aa3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 NFX1Q12986 1120 aaKnown RBP3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 POTEHQ6S545 545 aa3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 NGEFQ8N5V2 710 aa3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 TRAPPC8Q9Y2L5 1435 aa3.54□□□□□ -1.84
CCDC88A-205ENST00000426576 CAPN8A6NHC0 703 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms