RNA–Protein interactions for RNA: ENST00000396354.5

NDE1-201, Transcript of nudE neurodevelopment protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDE1, Length 3,221 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-201ENST00000396354 SPDYE4A6NLX3 237 aa11.66□□□□□ -0.54
NDE1-201ENST00000396354 NCLP19338 710 aaKnown RBP11.66□□□□□ -0.54
NDE1-201ENST00000396354 MBIPQ9NS73 344 aa11.66□□□□□ -0.54
NDE1-201ENST00000396354 KCNA6P17658 529 aa11.65□□□□□ -0.54
NDE1-201ENST00000396354 KRT24Q2M2I5 525 aa11.65□□□□□ -0.54
NDE1-201ENST00000396354 PTCH1Q13635 1447 aa11.65□□□□□ -0.54
NDE1-201ENST00000396354 NAP1L5Q96NT1 182 aaPredicted RBP11.65□□□□□ -0.54
NDE1-201ENST00000396354 ZNF853P0CG23 659 aa11.64□□□□□ -0.55
NDE1-201ENST00000396354 NOL8Q76FK4 1167 aaKnown RBP11.64□□□□□ -0.55
NDE1-201ENST00000396354 C8orf58Q8NAV2 365 aa11.64□□□□□ -0.55
NDE1-201ENST00000396354 FOXD4L6Q3SYB3 417 aaPredicted RBP11.64□□□□□ -0.55
NDE1-201ENST00000396354 FOXD4L3Q6VB84 417 aaPredicted RBP11.64□□□□□ -0.55
NDE1-201ENST00000396354 NECTIN2Q92692 538 aa11.64□□□□□ -0.55
NDE1-201ENST00000396354 GOLGA6L3A6NEY3 463 aa11.64□□□□□ -0.55
NDE1-201ENST00000396354 VAMP4O75379 141 aa11.64□□□□□ -0.55
NDE1-201ENST00000396354 SULT6B1Q6IMI4 303 aa11.64□□□□□ -0.55
NDE1-201ENST00000396354 NUTM2GQ5VZR2 741 aa11.63□□□□□ -0.55
NDE1-201ENST00000396354 ZNF428Q96B54 188 aa11.63□□□□□ -0.55
NDE1-201ENST00000396354 MIS18AQ9NYP9 233 aa11.63□□□□□ -0.55
NDE1-201ENST00000396354 DDX19BQ9UMR2 479 aa11.63□□□□□ -0.55
NDE1-201ENST00000396354 TBX22Q9Y458 520 aa11.63□□□□□ -0.55
NDE1-201ENST00000396354 LMTK3Q96Q04 1460 aa11.63□□□□□ -0.55
NDE1-201ENST00000396354 ZNF692Q9BU19 519 aaPredicted RBP11.63□□□□□ -0.55
NDE1-201ENST00000396354 FMN2Q9NZ56 1722 aa11.63□□□□□ -0.55
NDE1-201ENST00000396354 MAP3K19Q56UN5 1328 aa11.63□□□□□ -0.55
NDE1-201ENST00000396354 USP31Q70CQ4 1352 aa11.62□□□□□ -0.55
NDE1-201ENST00000396354 FOXO3O43524 673 aa11.62□□□□□ -0.55
NDE1-201ENST00000396354 TRAK2O60296 914 aa11.62□□□□□ -0.55
NDE1-201ENST00000396354 RRAGDQ9NQL2 400 aaPredicted RBP11.62□□□□□ -0.55
NDE1-201ENST00000396354 NPHP4O75161 1426 aaPredicted RBP11.62□□□□□ -0.55
NDE1-201ENST00000396354 MCM4P33991 863 aa11.62□□□□□ -0.55
NDE1-201ENST00000396354 MCM10Q7L590 875 aa11.62□□□□□ -0.55
NDE1-201ENST00000396354 UBE2Q2Q8WVN8 375 aa11.62□□□□□ -0.55
NDE1-201ENST00000396354 CT47B1P0C2W7 299 aaPredicted RBP11.61□□□□□ -0.55
NDE1-201ENST00000396354 CD2BP2O95400 341 aaKnown RBP11.61□□□□□ -0.55
NDE1-201ENST00000396354 XRCC6P12956 609 aaKnown RBP eCLIP11.61□□□□□ -0.558e-7■■□□□ 11.8
NDE1-201ENST00000396354 SLC4A10Q6U841 1118 aa11.61□□□□□ -0.55
NDE1-201ENST00000396354 C16orf71Q8IYS4 520 aaPredicted RBP11.61□□□□□ -0.55
NDE1-201ENST00000396354 MRPL50Q8N5N7 158 aaKnown RBP11.61□□□□□ -0.55
NDE1-201ENST00000396354 CHAMP1Q96JM3 812 aa11.6□□□□□ -0.55
NDE1-201ENST00000396354 ZBTB40Q9NUA8 1239 aa11.6□□□□□ -0.55
NDE1-201ENST00000396354 SMARCA5O60264 1052 aaPredicted RBP11.6□□□□□ -0.55
NDE1-201ENST00000396354 MKRN4PQ13434 485 aaPredicted RBP11.6□□□□□ -0.55
NDE1-201ENST00000396354 ANTXR1Q9H6X2 564 aa11.6□□□□□ -0.55
NDE1-201ENST00000396354 TSHZ3Q63HK5 1081 aa11.59□□□□□ -0.55
NDE1-201ENST00000396354 IFT57Q9NWB7 429 aa11.59□□□□□ -0.55
NDE1-201ENST00000396354 IPO8O15397 1037 aaKnown RBP11.58□□□□□ -0.56
NDE1-201ENST00000396354 DTNBO60941 627 aa11.58□□□□□ -0.56
NDE1-201ENST00000396354 CHD1LQ86WJ1 897 aa11.58□□□□□ -0.56
NDE1-201ENST00000396354 ARID3AQ99856 593 aa11.58□□□□□ -0.56
NDE1-201ENST00000396354 OTUD7AQ8TE49 926 aaPredicted RBP11.58□□□□□ -0.56
NDE1-201ENST00000396354 PNNQ9H307 717 aaKnown RBP11.58□□□□□ -0.56
NDE1-201ENST00000396354 NWD1Q149M9 1564 aa11.58□□□□□ -0.56
NDE1-201ENST00000396354 PLCB2Q00722 1185 aa11.58□□□□□ -0.56
NDE1-201ENST00000396354 ALDH1L2Q3SY69 923 aa11.58□□□□□ -0.56
NDE1-201ENST00000396354 CFAP44Q96MT7 982 aa11.58□□□□□ -0.56
NDE1-201ENST00000396354 CHMP5Q9NZZ3 219 aa11.58□□□□□ -0.56
NDE1-201ENST00000396354 PIK3R4Q99570 1358 aa11.57□□□□□ -0.56
NDE1-201ENST00000396354 NGDNQ8NEJ9 315 aaKnown RBP11.57□□□□□ -0.56
NDE1-201ENST00000396354 CHD2O14647 1828 aaKnown RBP11.57□□□□□ -0.56
NDE1-201ENST00000396354 TWISTNBQ3B726 338 aaPredicted RBP11.57□□□□□ -0.56
NDE1-201ENST00000396354 RGS12O14924 1447 aa11.57□□□□□ -0.56
NDE1-201ENST00000396354 KIF16BQ96L93 1317 aa11.56□□□□□ -0.56
NDE1-201ENST00000396354 GNAI1P63096 354 aa11.56□□□□□ -0.56
NDE1-201ENST00000396354 CRB1P82279 1406 aa11.56□□□□□ -0.56
NDE1-201ENST00000396354 SIRT2Q8IXJ6 389 aa11.56□□□□□ -0.56
NDE1-201ENST00000396354 VASPP50552 380 aaPredicted RBP11.56□□□□□ -0.56
NDE1-201ENST00000396354 MTHFSDQ2M296 383 aaKnown RBP11.56□□□□□ -0.56
NDE1-201ENST00000396354 TNPO1Q92973 898 aaKnown RBP11.56□□□□□ -0.56
NDE1-201ENST00000396354 EYA1Q99502 592 aa11.56□□□□□ -0.56
NDE1-201ENST00000396354 ZBTB7BO15156 539 aaPredicted RBP11.55□□□□□ -0.56
NDE1-201ENST00000396354 HDAC1Q13547 482 aaPredicted RBP11.55□□□□□ -0.56
NDE1-201ENST00000396354 SSFA2P28290 1259 aa11.55□□□□□ -0.56
NDE1-201ENST00000396354 BRPF1P55201 1214 aaPredicted RBP11.55□□□□□ -0.56
NDE1-201ENST00000396354 STRCQ7RTU9 1775 aa11.55□□□□□ -0.56
NDE1-201ENST00000396354 ABCC4O15439 1325 aa11.55□□□□□ -0.56
NDE1-201ENST00000396354 L1TD1Q5T7N2 865 aaKnown RBP11.54□□□□□ -0.56
NDE1-201ENST00000396354 TBC1D9Q6ZT07 1266 aa11.54□□□□□ -0.56
NDE1-201ENST00000396354 MPNDQ8N594 471 aa11.54□□□□□ -0.56
NDE1-201ENST00000396354 SBNO1A3KN83 1393 aa11.54□□□□□ -0.56
NDE1-201ENST00000396354 NLRP6P59044 892 aa11.54□□□□□ -0.56
NDE1-201ENST00000396354 SMC5Q8IY18 1101 aa11.54□□□□□ -0.56
NDE1-201ENST00000396354 TRIM44Q96DX7 344 aaPredicted RBP11.54□□□□□ -0.56
NDE1-201ENST00000396354 TTC21AQ8NDW8 1320 aa11.53□□□□□ -0.56
NDE1-201ENST00000396354 FLT4P35916 1363 aa11.53□□□□□ -0.56
NDE1-201ENST00000396354 F6X3S4 739 aa11.53□□□□□ -0.56
NDE1-201ENST00000396354 C14orf37Q86TY3 774 aa11.53□□□□□ -0.56
NDE1-201ENST00000396354 LTV1Q96GA3 475 aaPredicted RBP11.53□□□□□ -0.56
NDE1-201ENST00000396354 KDRP35968 1356 aa11.53□□□□□ -0.56
NDE1-201ENST00000396354 CHL1O00533 1208 aa11.53□□□□□ -0.56
NDE1-201ENST00000396354 USHBP1Q8N6Y0 703 aa11.53□□□□□ -0.56
NDE1-201ENST00000396354 ARHGEF10O15013 1369 aa11.53□□□□□ -0.56
NDE1-201ENST00000396354 AAMPQ13685 434 aa11.52□□□□□ -0.56
NDE1-201ENST00000396354 IGSF1Q8N6C5 1336 aa11.52□□□□□ -0.56
NDE1-201ENST00000396354 NUCB1Q02818 461 aa11.52□□□□□ -0.57
NDE1-201ENST00000396354 LTN1O94822 1766 aa11.52□□□□□ -0.57
NDE1-201ENST00000396354 ANKARQ7Z5J8 1434 aa11.52□□□□□ -0.57
NDE1-201ENST00000396354 USP54Q70EL1 1684 aa11.52□□□□□ -0.57
NDE1-201ENST00000396354 GAS2L2Q8NHY3 880 aa11.52□□□□□ -0.57
NDE1-201ENST00000396354 RGPD2P0DJD1 1756 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms