RNA–Protein interactions for RNA: ENST00000368545.7

TPM3-213, Transcript of tropomyosin 3, humanhuman

TSL 1 (best)

Gene TPM3, Length 2,147 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-213ENST00000368545 NPDC1Q9NQX5 325 aaPredicted RBP12.13□□□□□ -0.47
TPM3-213ENST00000368545 ADAMTS13Q76LX8 1427 aa12.12□□□□□ -0.47
TPM3-213ENST00000368545 HIRIP3Q9BW71 556 aaPredicted RBP12.11□□□□□ -0.47
TPM3-213ENST00000368545 CARD11Q9BXL7 1154 aa12.11□□□□□ -0.47
TPM3-213ENST00000368545 LRPPRCP42704 1394 aaKnown RBP12.11□□□□□ -0.47
TPM3-213ENST00000368545 EVI5O60447 810 aa12.11□□□□□ -0.47
TPM3-213ENST00000368545 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.11□□□□□ -0.47
TPM3-213ENST00000368545 SPDYE5A6NIY4 337 aa12.1□□□□□ -0.47
TPM3-213ENST00000368545 ADAMTS2O95450 1211 aa12.1□□□□□ -0.47
TPM3-213ENST00000368545 UNC5CLQ8IV45 518 aa12.1□□□□□ -0.47
TPM3-213ENST00000368545 BOLA1Q9Y3E2 137 aa12.1□□□□□ -0.47
TPM3-213ENST00000368545 NRXN1Q9ULB1 1477 aa12.1□□□□□ -0.47
TPM3-213ENST00000368545 C1QTNF8P60827 252 aa12.1□□□□□ -0.47
TPM3-213ENST00000368545 RPGRIP1LQ68CZ1 1315 aa12.1□□□□□ -0.47
TPM3-213ENST00000368545 TBC1D12O60347 775 aa12.09□□□□□ -0.47
TPM3-213ENST00000368545 TMEM131LA2VDJ0 1609 aa12.09□□□□□ -0.47
TPM3-213ENST00000368545 SNRKQ9NRH2 765 aa12.08□□□□□ -0.47
TPM3-213ENST00000368545 SLIT2O94813 1529 aa12.08□□□□□ -0.48
TPM3-213ENST00000368545 IRF5Q13568 498 aa12.08□□□□□ -0.48
TPM3-213ENST00000368545 RGS22Q8NE09 1264 aa12.08□□□□□ -0.48
TPM3-213ENST00000368545 AMOTL2Q9Y2J4 779 aa12.08□□□□□ -0.48
TPM3-213ENST00000368545 ZNF330Q9Y3S2 320 aaPredicted RBP12.08□□□□□ -0.48
TPM3-213ENST00000368545 MYO5BQ9ULV0 1848 aa12.08□□□□□ -0.48
TPM3-213ENST00000368545 NEXMIFQ5QGS0 1516 aa12.07□□□□□ -0.48
TPM3-213ENST00000368545 C1orf167Q5SNV9 1468 aa12.07□□□□□ -0.48
TPM3-213ENST00000368545 CHRDL2Q6WN34 429 aa12.07□□□□□ -0.48
TPM3-213ENST00000368545 NWD2Q9ULI1 1742 aa12.07□□□□□ -0.48
TPM3-213ENST00000368545 GLI3P10071 1580 aa12.07□□□□□ -0.48
TPM3-213ENST00000368545 MYSM1Q5VVJ2 828 aa12.07□□□□□ -0.48
TPM3-213ENST00000368545 KRT27Q7Z3Y8 459 aa12.07□□□□□ -0.48
TPM3-213ENST00000368545 DEFB132Q7Z7B7 95 aa12.07□□□□□ -0.48
TPM3-213ENST00000368545 FAM217BQ9NTX9 383 aaPredicted RBP12.07□□□□□ -0.48
TPM3-213ENST00000368545 CCDC7Q96M83 1385 aa12.06□□□□□ -0.48
TPM3-213ENST00000368545 WASHC2AQ641Q2 1341 aa12.06□□□□□ -0.48
TPM3-213ENST00000368545 VPS72Q15906 364 aa12.06□□□□□ -0.48
TPM3-213ENST00000368545 NPHP3Q7Z494 1330 aa12.06□□□□□ -0.48
TPM3-213ENST00000368545 DDX10Q13206 875 aaKnown RBP12.05□□□□□ -0.48
TPM3-213ENST00000368545 TMEM92Q6UXU6 159 aa12.05□□□□□ -0.48
TPM3-213ENST00000368545 NLRP7Q8WX94 980 aa12.05□□□□□ -0.48
TPM3-213ENST00000368545 NBPF14Q5TI25 921 aa12.05□□□□□ -0.48
TPM3-213ENST00000368545 C11orf95C9JLR9 678 aaPredicted RBP12.04□□□□□ -0.48
TPM3-213ENST00000368545 MTMR7Q9Y216 660 aa12.04□□□□□ -0.48
TPM3-213ENST00000368545 PIK3C2GO75747 1445 aa12.04□□□□□ -0.48
TPM3-213ENST00000368545 GZF1Q9H116 711 aaPredicted RBP12.04□□□□□ -0.48
TPM3-213ENST00000368545 BRWD3Q6RI45 1802 aa12.03□□□□□ -0.48
TPM3-213ENST00000368545 FAM161AQ3B820 660 aa12.03□□□□□ -0.48
TPM3-213ENST00000368545 NBPF1Q3BBV0 1214 aa12.03□□□□□ -0.48
TPM3-213ENST00000368545 TMCO4Q5TGY1 634 aa12.03□□□□□ -0.48
TPM3-213ENST00000368545 SPON1Q9HCB6 807 aa12.03□□□□□ -0.48
TPM3-213ENST00000368545 PSDA5PKW4 1024 aaPredicted RBP12.02□□□□□ -0.48
TPM3-213ENST00000368545 RFC5P40937 340 aa12.02□□□□□ -0.48
TPM3-213ENST00000368545 EN1Q05925 392 aaPredicted RBP12.02□□□□□ -0.48
TPM3-213ENST00000368545 SEPT12Q8IYM1 358 aa12.02□□□□□ -0.48
TPM3-213ENST00000368545 PPP1R1BQ9UD71 204 aaPredicted RBP12.02□□□□□ -0.48
TPM3-213ENST00000368545 KIF7Q2M1P5 1343 aa12.02□□□□□ -0.49
TPM3-213ENST00000368545 EIF3AQ14152 1382 aaKnown RBP12.02□□□□□ -0.49
TPM3-213ENST00000368545 ADGRF5Q8IZF2 1346 aa12.01□□□□□ -0.49
TPM3-213ENST00000368545 ST20-MTHFSA0A0A6YYL1 179 aa12.01□□□□□ -0.49
TPM3-213ENST00000368545 CLK2P49760 499 aaKnown RBP12.01□□□□□ -0.49
TPM3-213ENST00000368545 IRX5P78411 483 aaPredicted RBP12.01□□□□□ -0.49
TPM3-213ENST00000368545 ZNF784Q8NCA9 323 aaPredicted RBP12.01□□□□□ -0.49
TPM3-213ENST00000368545 BANK1Q8NDB2 785 aa12.01□□□□□ -0.49
TPM3-213ENST00000368545 MAP3K7O43318 606 aa12□□□□□ -0.49
TPM3-213ENST00000368545 G3V3G9 751 aa11.99□□□□□ -0.49
TPM3-213ENST00000368545 PTPRUQ92729 1446 aa11.99□□□□□ -0.49
TPM3-213ENST00000368545 R3HDM1Q15032 1099 aaKnown RBP11.99□□□□□ -0.49
TPM3-213ENST00000368545 METTL3Q86U44 580 aaKnown RBP11.99□□□□□ -0.49
TPM3-213ENST00000368545 NALCNQ8IZF0 1738 aa11.99□□□□□ -0.49
TPM3-213ENST00000368545 MFAP1P55081 439 aaKnown RBP11.98□□□□□ -0.49
TPM3-213ENST00000368545 TSR1Q2NL82 804 aaKnown RBP11.98□□□□□ -0.49
TPM3-213ENST00000368545 OCEL1Q9H607 264 aa11.98□□□□□ -0.49
TPM3-213ENST00000368545 GDPD2Q9HCC8 539 aa11.98□□□□□ -0.49
TPM3-213ENST00000368545 ADGRB1O14514 1584 aa11.98□□□□□ -0.49
TPM3-213ENST00000368545 ANP32CO43423 234 aa11.98□□□□□ -0.49
TPM3-213ENST00000368545 KCNQ2O43526 872 aa11.98□□□□□ -0.49
TPM3-213ENST00000368545 ANO8Q9HCE9 1232 aaPredicted RBP11.97□□□□□ -0.49
TPM3-213ENST00000368545 PCDH10Q9P2E7 1040 aa11.97□□□□□ -0.49
TPM3-213ENST00000368545 USP32Q8NFA0 1604 aa11.97□□□□□ -0.49
TPM3-213ENST00000368545 RREB1Q92766 1687 aa11.97□□□□□ -0.49
TPM3-213ENST00000368545 CFAP70Q5T0N1 1121 aa11.96□□□□□ -0.49
TPM3-213ENST00000368545 TNS1Q9HBL0 1735 aaKnown RBP11.96□□□□□ -0.49
TPM3-213ENST00000368545 PXDNQ92626 1479 aa11.96□□□□□ -0.49
TPM3-213ENST00000368545 GALR2O43603 387 aaPredicted RBP11.96□□□□□ -0.5
TPM3-213ENST00000368545 TBC1D2Q9BYX2 928 aa11.96□□□□□ -0.5
TPM3-213ENST00000368545 C14orf93Q9H972 538 aaKnown RBP11.96□□□□□ -0.5
TPM3-213ENST00000368545 KIF1AQ12756 1690 aa11.96□□□□□ -0.5
TPM3-213ENST00000368545 FOXD4L5Q5VV16 416 aaPredicted RBP11.95□□□□□ -0.5
TPM3-213ENST00000368545 MTMR14Q8NCE2 650 aa11.95□□□□□ -0.5
TPM3-213ENST00000368545 FOXD4L4Q8WXT5 416 aaPredicted RBP11.95□□□□□ -0.5
TPM3-213ENST00000368545 TESK2Q96S53 571 aa11.95□□□□□ -0.5
TPM3-213ENST00000368545 CDC42BPGQ6DT37 1551 aa11.95□□□□□ -0.5
TPM3-213ENST00000368545 TMF1P82094 1093 aa11.95□□□□□ -0.5
TPM3-213ENST00000368545 CHD4Q14839 1912 aa11.94□□□□□ -0.5
TPM3-213ENST00000368545 GIGYF1O75420 1035 aaPredicted RBP11.94□□□□□ -0.5
TPM3-213ENST00000368545 ZNF428Q96B54 188 aa11.94□□□□□ -0.5
TPM3-213ENST00000368545 SBNO2Q9Y2G9 1366 aa11.94□□□□□ -0.5
TPM3-213ENST00000368545 ARHGEF28Q8N1W1 1705 aaKnown RBP11.94□□□□□ -0.5
TPM3-213ENST00000368545 PHF14O94880 888 aa11.93□□□□□ -0.5
TPM3-213ENST00000368545 ATN1P54259 1190 aaPredicted RBP11.93□□□□□ -0.5
TPM3-213ENST00000368545 PTCD2Q8WV60 388 aaKnown RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms