RNA–Protein interactions for RNA: ENST00000360642.7

CLCN3-202, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 2 BASIC

Gene CLCN3, Length 3,208 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-202ENST00000360642 FDX1P10109 184 aa9.77□□□□□ -0.85
CLCN3-202ENST00000360642 AFAP1Q8N556 730 aa9.77□□□□□ -0.85
CLCN3-202ENST00000360642 DCBLD2Q96PD2 775 aa9.77□□□□□ -0.85
CLCN3-202ENST00000360642 WDR7Q9Y4E6 1490 aa9.76□□□□□ -0.85
CLCN3-202ENST00000360642 VWDEQ8N2E2 1590 aa9.75□□□□□ -0.85
CLCN3-202ENST00000360642 SLC10A3P09131 477 aa9.75□□□□□ -0.85
CLCN3-202ENST00000360642 MADDQ8WXG6 1647 aa9.75□□□□□ -0.85
CLCN3-202ENST00000360642 INO80Q9ULG1 1556 aaPredicted RBP9.75□□□□□ -0.85
CLCN3-202ENST00000360642 RNF40O75150 1001 aa9.75□□□□□ -0.85
CLCN3-202ENST00000360642 NLRP13Q86W25 1043 aa9.75□□□□□ -0.85
CLCN3-202ENST00000360642 TMEM88BA6NKF7 163 aa9.75□□□□□ -0.85
CLCN3-202ENST00000360642 HOXA2O43364 376 aa9.75□□□□□ -0.85
CLCN3-202ENST00000360642 GABBR2O75899 941 aa9.75□□□□□ -0.85
CLCN3-202ENST00000360642 CEP152O94986 1710 aa9.75□□□□□ -0.85
CLCN3-202ENST00000360642 LHX6Q9UPM6 363 aa9.75□□□□□ -0.85
CLCN3-202ENST00000360642 NDUFB9Q9Y6M9 179 aa9.75□□□□□ -0.85
CLCN3-202ENST00000360642 SPHKAPQ2M3C7 1700 aa9.74□□□□□ -0.85
CLCN3-202ENST00000360642 TMEM134Q9H6X4 195 aa9.74□□□□□ -0.85
CLCN3-202ENST00000360642 TET3O43151 1660 aa9.74□□□□□ -0.85
CLCN3-202ENST00000360642 C6orf229H3BNL8 230 aa9.74□□□□□ -0.85
CLCN3-202ENST00000360642 STAC3Q96MF2 364 aa9.74□□□□□ -0.85
CLCN3-202ENST00000360642 USP35Q9P2H5 1018 aa9.74□□□□□ -0.85
CLCN3-202ENST00000360642 FANCAO15360 1455 aa9.74□□□□□ -0.85
CLCN3-202ENST00000360642 ATP7AQ04656 1500 aa9.73□□□□□ -0.85
CLCN3-202ENST00000360642 FUT2Q10981 343 aa9.73□□□□□ -0.85
CLCN3-202ENST00000360642 IQGAP1P46940 1657 aa9.73□□□□□ -0.85
CLCN3-202ENST00000360642 TMF1P82094 1093 aa9.73□□□□□ -0.85
CLCN3-202ENST00000360642 B4GALNT3Q6L9W6 998 aa9.73□□□□□ -0.85
CLCN3-202ENST00000360642 ANP32EQ9BTT0 268 aa9.73□□□□□ -0.85
CLCN3-202ENST00000360642 INSRP06213 1382 aa9.73□□□□□ -0.85
CLCN3-202ENST00000360642 NEURL4Q96JN8 1562 aa9.73□□□□□ -0.85
CLCN3-202ENST00000360642 CLTCL1P53675 1640 aa9.73□□□□□ -0.85
CLCN3-202ENST00000360642 E9PSI1 815 aa9.73□□□□□ -0.85
CLCN3-202ENST00000360642 SCAPERQ9BY12 1400 aa9.72□□□□□ -0.85
CLCN3-202ENST00000360642 BRD1O95696 1058 aa9.72□□□□□ -0.85
CLCN3-202ENST00000360642 ZMYM4Q5VZL5 1548 aa9.72□□□□□ -0.85
CLCN3-202ENST00000360642 PUS10Q3MIT2 529 aaKnown RBP9.72□□□□□ -0.85
CLCN3-202ENST00000360642 WWC1Q8IX03 1113 aa9.72□□□□□ -0.85
CLCN3-202ENST00000360642 PANK3Q9H999 370 aa9.72□□□□□ -0.85
CLCN3-202ENST00000360642 TATDN2Q93075 761 aa9.71□□□□□ -0.85
CLCN3-202ENST00000360642 MROH1Q8NDA8 1641 aa9.71□□□□□ -0.86
CLCN3-202ENST00000360642 FANCIQ9NVI1 1328 aa9.71□□□□□ -0.86
CLCN3-202ENST00000360642 DIXDC1Q155Q3 683 aa9.71□□□□□ -0.86
CLCN3-202ENST00000360642 MAFBQ9Y5Q3 323 aaPredicted RBP9.71□□□□□ -0.86
CLCN3-202ENST00000360642 ZBTB3Q9H5J0 574 aa9.7□□□□□ -0.86
CLCN3-202ENST00000360642 ADGRL1O94910 1474 aa9.7□□□□□ -0.86
CLCN3-202ENST00000360642 ALG2Q9H553 416 aa9.7□□□□□ -0.86
CLCN3-202ENST00000360642 POTEIP0CG38 1075 aa9.69□□□□□ -0.86
CLCN3-202ENST00000360642 SULF1Q8IWU6 871 aa9.69□□□□□ -0.86
CLCN3-202ENST00000360642 SCAF11Q99590 1463 aaKnown RBP9.69□□□□□ -0.86
CLCN3-202ENST00000360642 DNAJB2P25686 324 aa9.69□□□□□ -0.86
CLCN3-202ENST00000360642 VRTNQ9H8Y1 702 aa9.69□□□□□ -0.86
CLCN3-202ENST00000360642 KIAA1210Q9ULL0 1709 aa9.69□□□□□ -0.86
CLCN3-202ENST00000360642 KANK1Q14678 1352 aa9.69□□□□□ -0.86
CLCN3-202ENST00000360642 TMEM164Q5U3C3 297 aa9.69□□□□□ -0.86
CLCN3-202ENST00000360642 ZMIZ1Q9ULJ6 1067 aa9.69□□□□□ -0.86
CLCN3-202ENST00000360642 BLMP54132 1417 aaPredicted RBP9.69□□□□□ -0.86
CLCN3-202ENST00000360642 ASXL2Q76L83 1435 aa9.69□□□□□ -0.86
CLCN3-202ENST00000360642 SERPINB4P48594 390 aa9.68□□□□□ -0.86
CLCN3-202ENST00000360642 PDE3BQ13370 1112 aa9.68□□□□□ -0.86
CLCN3-202ENST00000360642 CC2D1BQ5T0F9 858 aaKnown RBP9.68□□□□□ -0.86
CLCN3-202ENST00000360642 CERKQ8TCT0 537 aa9.68□□□□□ -0.86
CLCN3-202ENST00000360642 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.67□□□□□ -0.86
CLCN3-202ENST00000360642 SYNMO15061 1565 aa9.67□□□□□ -0.86
CLCN3-202ENST00000360642 KIF3BO15066 747 aa9.67□□□□□ -0.86
CLCN3-202ENST00000360642 KIDINS220Q9ULH0 1771 aa9.67□□□□□ -0.86
CLCN3-202ENST00000360642 SLAIN2Q9P270 581 aa9.67□□□□□ -0.86
CLCN3-202ENST00000360642 SALL2Q9Y467 1007 aaPredicted RBP9.67□□□□□ -0.86
CLCN3-202ENST00000360642 MTMR2Q13614 643 aa9.66□□□□□ -0.86
CLCN3-202ENST00000360642 SND1Q7KZF4 910 aaKnown RBP eCLIP9.66□□□□□ -0.863e-6■■□□□ 11.7
CLCN3-202ENST00000360642 GAS2L2Q8NHY3 880 aa9.66□□□□□ -0.86
CLCN3-202ENST00000360642 MYOM2P54296 1465 aa9.66□□□□□ -0.86
CLCN3-202ENST00000360642 SWT1Q5T5J6 900 aaKnown RBP9.66□□□□□ -0.86
CLCN3-202ENST00000360642 EFCAB6Q5THR3 1501 aa9.66□□□□□ -0.86
CLCN3-202ENST00000360642 LMTK2Q8IWU2 1503 aa9.66□□□□□ -0.86
CLCN3-202ENST00000360642 PHLDB3Q6NSJ2 640 aa9.65□□□□□ -0.86
CLCN3-202ENST00000360642 KCNK17Q96T54 332 aa9.65□□□□□ -0.86
CLCN3-202ENST00000360642 MAP3K4Q9Y6R4 1608 aa9.65□□□□□ -0.86
CLCN3-202ENST00000360642 MYOM1P52179 1685 aa9.65□□□□□ -0.86
CLCN3-202ENST00000360642 PSEN2P49810 448 aa9.65□□□□□ -0.87
CLCN3-202ENST00000360642 RRP1P56182 461 aaKnown RBP9.65□□□□□ -0.87
CLCN3-202ENST00000360642 PRM3Q9NNZ6 103 aa9.65□□□□□ -0.87
CLCN3-202ENST00000360642 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.65□□□□□ -0.87
CLCN3-202ENST00000360642 AXIN2Q9Y2T1 843 aa9.65□□□□□ -0.87
CLCN3-202ENST00000360642 IFT172Q9UG01 1749 aa9.64□□□□□ -0.87
CLCN3-202ENST00000360642 HOXB3P14651 431 aaPredicted RBP9.64□□□□□ -0.87
CLCN3-202ENST00000360642 KCNH2Q12809 1159 aa9.64□□□□□ -0.87
CLCN3-202ENST00000360642 GPR153Q6NV75 609 aa9.64□□□□□ -0.87
CLCN3-202ENST00000360642 ZNF518AQ6AHZ1 1483 aa9.64□□□□□ -0.87
CLCN3-202ENST00000360642 NRXN1Q9ULB1 1477 aa9.64□□□□□ -0.87
CLCN3-202ENST00000360642 UGGT1Q9NYU2 1555 aa9.64□□□□□ -0.87
CLCN3-202ENST00000360642 TAGLNQ01995 201 aaKnown RBP9.64□□□□□ -0.87
CLCN3-202ENST00000360642 CRTC2Q53ET0 693 aaPredicted RBP9.64□□□□□ -0.87
CLCN3-202ENST00000360642 HELBQ8NG08 1087 aaPredicted RBP9.64□□□□□ -0.87
CLCN3-202ENST00000360642 RCAN3Q9UKA8 241 aa9.64□□□□□ -0.87
CLCN3-202ENST00000360642 PPRC1Q5VV67 1664 aaKnown RBP9.64□□□□□ -0.87
CLCN3-202ENST00000360642 NOM1Q5C9Z4 860 aaKnown RBP9.63□□□□□ -0.87
CLCN3-202ENST00000360642 CCDC136Q96JN2 1154 aa9.63□□□□□ -0.87
CLCN3-202ENST00000360642 RBM27Q9P2N5 1060 aaKnown RBP9.63□□□□□ -0.87
CLCN3-202ENST00000360642 EIF3AQ14152 1382 aaKnown RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms