RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 LRRFIP2Q9Y608 721 aaKnown RBP21.63■■□□□ 1.05
SHANK1-202ENST00000359082 CABP1Q9NZU7 370 aa21.62■■□□□ 1.05
SHANK1-202ENST00000359082 GBP2P32456 591 aaPredicted RBP21.62■■□□□ 1.05
SHANK1-202ENST00000359082 SSR1P43307 286 aaKnown RBP21.62■■□□□ 1.05
SHANK1-202ENST00000359082 NEBLO76041 1014 aa21.62■■□□□ 1.05
SHANK1-202ENST00000359082 SCAPERQ9BY12 1400 aa21.62■■□□□ 1.05
SHANK1-202ENST00000359082 DHX8Q14562 1220 aaKnown RBP21.62■■□□□ 1.05
SHANK1-202ENST00000359082 CCDC85AQ96PX6 553 aaPredicted RBP21.62■■□□□ 1.05
SHANK1-202ENST00000359082 IFT140Q96RY7 1462 aa21.61■■□□□ 1.05
SHANK1-202ENST00000359082 SRGAP3O43295 1099 aa21.61■■□□□ 1.05
SHANK1-202ENST00000359082 KIAA1328Q86T90 577 aa21.61■■□□□ 1.05
SHANK1-202ENST00000359082 EIF3JO75822 258 aaKnown RBP21.61■■□□□ 1.05
SHANK1-202ENST00000359082 IL27Q8NEV9 243 aa21.61■■□□□ 1.05
SHANK1-202ENST00000359082 NUP62CLQ9H1M0 184 aa21.61■■□□□ 1.05
SHANK1-202ENST00000359082 IL1RAPL2Q9NP60 686 aa21.61■■□□□ 1.05
SHANK1-202ENST00000359082 SF3B2Q13435 895 aaKnown RBP21.61■■□□□ 1.05
SHANK1-202ENST00000359082 KIF21BO75037 1637 aa21.61■■□□□ 1.05
SHANK1-202ENST00000359082 NCOA2Q15596 1464 aa21.61■■□□□ 1.05
SHANK1-202ENST00000359082 MVPQ14764 893 aaKnown RBP21.61■■□□□ 1.05
SHANK1-202ENST00000359082 SLC12A5Q9H2X9 1139 aa21.61■■□□□ 1.05
SHANK1-202ENST00000359082 PRG4Q92954 1404 aaPredicted RBP21.6■■□□□ 1.05
SHANK1-202ENST00000359082 GOLGA6L7A0A1B0GV03 622 aa21.6■■□□□ 1.05
SHANK1-202ENST00000359082 BMP2KQ9NSY1 1161 aaPredicted RBP21.6■■□□□ 1.05
SHANK1-202ENST00000359082 NBPF1Q3BBV0 1214 aa21.6■■□□□ 1.05
SHANK1-202ENST00000359082 UPF3BQ9BZI7 483 aaKnown RBP21.6■■□□□ 1.05
SHANK1-202ENST00000359082 CAMK4Q16566 473 aa21.6■■□□□ 1.05
SHANK1-202ENST00000359082 NUTM1Q86Y26 1132 aa21.6■■□□□ 1.05
SHANK1-202ENST00000359082 IQCEQ6IPM2 695 aa21.59■■□□□ 1.05
SHANK1-202ENST00000359082 DDX11Q96FC9 970 aa21.59■■□□□ 1.05
SHANK1-202ENST00000359082 EIF5P55010 431 aaKnown RBP21.58■■□□□ 1.05
SHANK1-202ENST00000359082 CCDC102AQ96A19 550 aa21.58■■□□□ 1.05
SHANK1-202ENST00000359082 LRP2BPQ9P2M1 347 aa21.58■■□□□ 1.05
SHANK1-202ENST00000359082 RRS1Q15050 365 aaKnown RBP21.58■■□□□ 1.05
SHANK1-202ENST00000359082 CFAP45Q9UL16 551 aa21.58■■□□□ 1.05
SHANK1-202ENST00000359082 CASTP20810 708 aaKnown RBP21.58■■□□□ 1.05
SHANK1-202ENST00000359082 ATF7IPQ6VMQ6 1270 aa21.58■■□□□ 1.05
SHANK1-202ENST00000359082 PLEKHH2Q8IVE3 1493 aa21.57■■□□□ 1.04
SHANK1-202ENST00000359082 ZSCAN31Q96LW9 406 aaPredicted RBP21.57■■□□□ 1.04
SHANK1-202ENST00000359082 AFAP1Q8N556 730 aa21.57■■□□□ 1.04
SHANK1-202ENST00000359082 TAF3Q5VWG9 929 aa21.57■■□□□ 1.04
SHANK1-202ENST00000359082 JAKMIP3Q5VZ66 844 aa21.56■■□□□ 1.04
SHANK1-202ENST00000359082 FILIP1Q7Z7B0 1213 aa21.56■■□□□ 1.04
SHANK1-202ENST00000359082 IDH1O75874 414 aaKnown RBP21.56■■□□□ 1.04
SHANK1-202ENST00000359082 EPB41L2O43491 1005 aaKnown RBP21.56■■□□□ 1.04
SHANK1-202ENST00000359082 TAF4BQ92750 862 aa21.56■■□□□ 1.04
SHANK1-202ENST00000359082 CTNNA3Q9UI47 895 aa21.56■■□□□ 1.04
SHANK1-202ENST00000359082 ERICH3Q5RHP9 1530 aa21.56■■□□□ 1.04
SHANK1-202ENST00000359082 SMTNL1A8MU46 457 aa21.56■■□□□ 1.04
SHANK1-202ENST00000359082 EZRP15311 586 aaKnown RBP21.55■■□□□ 1.04
SHANK1-202ENST00000359082 ERICH4A6NGS2 130 aa21.55■■□□□ 1.04
SHANK1-202ENST00000359082 DESP17661 470 aa21.55■■□□□ 1.04
SHANK1-202ENST00000359082 WDR63Q8IWG1 891 aa21.55■■□□□ 1.04
SHANK1-202ENST00000359082 WASF1Q92558 559 aa21.54■■□□□ 1.04
SHANK1-202ENST00000359082 IMMTQ16891 758 aaKnown RBP21.54■■□□□ 1.04
SHANK1-202ENST00000359082 AIDAQ96BJ3 306 aa21.54■■□□□ 1.04
SHANK1-202ENST00000359082 PPP6R1Q9UPN7 881 aa21.54■■□□□ 1.04
SHANK1-202ENST00000359082 IGHMBP2P38935 993 aaKnown RBP21.53■■□□□ 1.04
SHANK1-202ENST00000359082 CEP126Q9P2H0 1117 aa21.53■■□□□ 1.04
SHANK1-202ENST00000359082 RTEL1-TNFRSF6BF6WH68 1400 aa21.53■■□□□ 1.04
SHANK1-202ENST00000359082 EFCAB5A4FU69 1503 aa21.53■■□□□ 1.04
SHANK1-202ENST00000359082 XPCQ01831 940 aaPredicted RBP21.53■■□□□ 1.04
SHANK1-202ENST00000359082 CCDC148Q8NFR7 591 aa21.53■■□□□ 1.04
SHANK1-202ENST00000359082 CCDC97Q96F63 343 aaPredicted RBP21.53■■□□□ 1.04
SHANK1-202ENST00000359082 CEP131Q9UPN4 1083 aa21.52■■□□□ 1.04
SHANK1-202ENST00000359082 ZNF692Q9BU19 519 aaPredicted RBP21.52■■□□□ 1.04
SHANK1-202ENST00000359082 ZNF397Q8NF99 534 aaPredicted RBP21.52■■□□□ 1.04
SHANK1-202ENST00000359082 CFAP100Q494V2 611 aa21.52■■□□□ 1.03
SHANK1-202ENST00000359082 BACH2Q9BYV9 841 aa21.51■■□□□ 1.03
SHANK1-202ENST00000359082 MIS18AQ9NYP9 233 aa21.51■■□□□ 1.03
SHANK1-202ENST00000359082 CFTRP13569 1480 aa21.51■■□□□ 1.03
SHANK1-202ENST00000359082 SYCE3A1L190 88 aa21.51■■□□□ 1.03
SHANK1-202ENST00000359082 KRT32Q14532 448 aa21.51■■□□□ 1.03
SHANK1-202ENST00000359082 CCDC83Q8IWF9 413 aa21.5■■□□□ 1.03
SHANK1-202ENST00000359082 ARHGAP29Q52LW3 1261 aa21.5■■□□□ 1.03
SHANK1-202ENST00000359082 ABCF2Q9UG63 623 aa21.5■■□□□ 1.03
SHANK1-202ENST00000359082 ERBINQ96RT1 1412 aa21.5■■□□□ 1.03
SHANK1-202ENST00000359082 CHMP4BP1P59074 171 aa21.49■■□□□ 1.03
SHANK1-202ENST00000359082 MAP3K11Q16584 847 aa21.49■■□□□ 1.03
SHANK1-202ENST00000359082 SMARCA5O60264 1052 aaPredicted RBP21.49■■□□□ 1.03
SHANK1-202ENST00000359082 SEC63Q9UGP8 760 aaKnown RBP21.49■■□□□ 1.03
SHANK1-202ENST00000359082 EHBP1L1Q8N3D4 1523 aa21.48■■□□□ 1.03
SHANK1-202ENST00000359082 PIP4K2BP78356 416 aa21.48■■□□□ 1.03
SHANK1-202ENST00000359082 METTL24Q5JXM2 366 aa21.48■■□□□ 1.03
SHANK1-202ENST00000359082 CCDC113Q9H0I3 377 aa21.48■■□□□ 1.03
SHANK1-202ENST00000359082 CASQ1P31415 396 aa21.47■■□□□ 1.03
SHANK1-202ENST00000359082 TMEM57Q8N5G2 664 aa21.47■■□□□ 1.03
SHANK1-202ENST00000359082 POTEJP0CG39 1038 aa21.46■■□□□ 1.03
SHANK1-202ENST00000359082 PRPF40BQ6NWY9 871 aaKnown RBP21.46■■□□□ 1.03
SHANK1-202ENST00000359082 TMX1Q9H3N1 280 aa21.46■■□□□ 1.03
SHANK1-202ENST00000359082 MINDY4BA8MYZ0 360 aa21.46■■□□□ 1.03
SHANK1-202ENST00000359082 EXOC6BQ9Y2D4 811 aa21.46■■□□□ 1.03
SHANK1-202ENST00000359082 POLR3DP05423 398 aaPredicted RBP21.46■■□□□ 1.03
SHANK1-202ENST00000359082 THEMISQ8N1K5 641 aaPredicted RBP21.46■■□□□ 1.03
SHANK1-202ENST00000359082 CC2D2AQ9P2K1 1620 aa21.46■■□□□ 1.03
SHANK1-202ENST00000359082 FERMT3Q86UX7 667 aa21.46■■□□□ 1.03
SHANK1-202ENST00000359082 GNAT3A8MTJ3 354 aa21.45■■□□□ 1.02
SHANK1-202ENST00000359082 SPA17Q15506 151 aa21.45■■□□□ 1.02
SHANK1-202ENST00000359082 KLHL10Q6JEL2 608 aa21.45■■□□□ 1.02
SHANK1-202ENST00000359082 UBA5Q9GZZ9 404 aa21.45■■□□□ 1.02
SHANK1-202ENST00000359082 HECW1Q76N89 1606 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms