RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 PDCL3Q9H2J4 239 aa18.56■□□□□ 0.56
SHH-201ENST00000297261 DIP2CQ9Y2E4 1556 aa18.55■□□□□ 0.56
SHH-201ENST00000297261 SYNMO15061 1565 aa18.55■□□□□ 0.56
SHH-201ENST00000297261 HSP90AB2PQ58FF8 381 aa18.55■□□□□ 0.56
SHH-201ENST00000297261 GPATCH3Q96I76 525 aa18.55■□□□□ 0.56
SHH-201ENST00000297261 METP08581 1390 aa18.55■□□□□ 0.56
SHH-201ENST00000297261 CLCN1P35523 988 aa18.55■□□□□ 0.56
SHH-201ENST00000297261 CCDC27Q2M243 656 aa18.54■□□□□ 0.56
SHH-201ENST00000297261 SPC24Q8NBT2 197 aa18.54■□□□□ 0.56
SHH-201ENST00000297261 ABCA6Q8N139 1617 aa18.54■□□□□ 0.56
SHH-201ENST00000297261 C8orf34Q49A92 452 aa18.53■□□□□ 0.56
SHH-201ENST00000297261 TNPO1Q92973 898 aaKnown RBP18.53■□□□□ 0.56
SHH-201ENST00000297261 BLMP54132 1417 aaPredicted RBP18.53■□□□□ 0.56
SHH-201ENST00000297261 EVA1CP58658 441 aa18.53■□□□□ 0.56
SHH-201ENST00000297261 ADGRB3O60242 1522 aa18.52■□□□□ 0.56
SHH-201ENST00000297261 FAM184AQ8NB25 1140 aa18.52■□□□□ 0.56
SHH-201ENST00000297261 FBXW7Q969H0 707 aa18.52■□□□□ 0.56
SHH-201ENST00000297261 MIS18AQ9NYP9 233 aa18.52■□□□□ 0.56
SHH-201ENST00000297261 FIBPO43427 364 aa18.52■□□□□ 0.56
SHH-201ENST00000297261 HOMER1Q86YM7 354 aa18.52■□□□□ 0.56
SHH-201ENST00000297261 FAM83GA6ND36 823 aa18.52■□□□□ 0.55
SHH-201ENST00000297261 TULP1O00294 542 aaPredicted RBP18.52■□□□□ 0.55
SHH-201ENST00000297261 ZC3H6P61129 1189 aaKnown RBP18.51■□□□□ 0.55
SHH-201ENST00000297261 CHD1LQ86WJ1 897 aa18.51■□□□□ 0.55
SHH-201ENST00000297261 USHBP1Q8N6Y0 703 aa18.51■□□□□ 0.55
SHH-201ENST00000297261 SYCE3A1L190 88 aa18.51■□□□□ 0.55
SHH-201ENST00000297261 NPHP1O15259 732 aa18.51■□□□□ 0.55
SHH-201ENST00000297261 PLEKHO1Q53GL0 409 aaPredicted RBP18.51■□□□□ 0.55
SHH-201ENST00000297261 GOLGA6L1Q8N7Z2 621 aa18.51■□□□□ 0.55
SHH-201ENST00000297261 SLC4A2P04920 1241 aa18.5■□□□□ 0.55
SHH-201ENST00000297261 SSFA2P28290 1259 aa18.5■□□□□ 0.55
SHH-201ENST00000297261 DMRT2Q9Y5R5 561 aa18.5■□□□□ 0.55
SHH-201ENST00000297261 ZNF530Q6P9A1 599 aaPredicted RBP18.49■□□□□ 0.55
SHH-201ENST00000297261 ZKSCAN1P17029 563 aaPredicted RBP18.49■□□□□ 0.55
SHH-201ENST00000297261 AEBP1Q8IUX7 1158 aa18.49■□□□□ 0.55
SHH-201ENST00000297261 TMEM57Q8N5G2 664 aa18.49■□□□□ 0.55
SHH-201ENST00000297261 KCNH5Q8NCM2 988 aa18.49■□□□□ 0.55
SHH-201ENST00000297261 TBC1D32Q96NH3 1257 aa18.49■□□□□ 0.55
SHH-201ENST00000297261 TRIM5Q9C035 493 aa18.49■□□□□ 0.55
SHH-201ENST00000297261 RRAGDQ9NQL2 400 aaPredicted RBP18.49■□□□□ 0.55
SHH-201ENST00000297261 TTC21AQ8NDW8 1320 aa18.49■□□□□ 0.55
SHH-201ENST00000297261 SASS6Q6UVJ0 657 aa18.49■□□□□ 0.55
SHH-201ENST00000297261 CREBRFQ8IUR6 639 aa18.49■□□□□ 0.55
SHH-201ENST00000297261 GCC1Q96CN9 775 aa18.49■□□□□ 0.55
SHH-201ENST00000297261 TTC5Q8N0Z6 440 aa18.48■□□□□ 0.55
SHH-201ENST00000297261 ZNF428Q96B54 188 aa18.48■□□□□ 0.55
SHH-201ENST00000297261 ZFYVE9O95405 1425 aa18.47■□□□□ 0.55
SHH-201ENST00000297261 EIF4A2Q14240 407 aaKnown RBP18.47■□□□□ 0.55
SHH-201ENST00000297261 CCDC9Q9Y3X0 531 aaKnown RBP18.47■□□□□ 0.55
SHH-201ENST00000297261 ZMYM4Q5VZL5 1548 aa18.47■□□□□ 0.55
SHH-201ENST00000297261 CAMSAP1Q5T5Y3 1602 aa18.47■□□□□ 0.55
SHH-201ENST00000297261 EDC4Q6P2E9 1401 aaKnown RBP18.47■□□□□ 0.55
SHH-201ENST00000297261 PHACTR3Q96KR7 559 aa18.47■□□□□ 0.55
SHH-201ENST00000297261 CCDC30Q5VVM6 783 aa18.47■□□□□ 0.55
SHH-201ENST00000297261 CWC22Q9HCG8 908 aaKnown RBP18.47■□□□□ 0.55
SHH-201ENST00000297261 ZHX1Q9UKY1 873 aaPredicted RBP18.47■□□□□ 0.55
SHH-201ENST00000297261 TPD52L1Q16890 204 aaPredicted RBP18.46■□□□□ 0.55
SHH-201ENST00000297261 CBX1P83916 185 aa18.46■□□□□ 0.55
SHH-201ENST00000297261 INSRP06213 1382 aa18.46■□□□□ 0.55
SHH-201ENST00000297261 KIF3AQ9Y496 699 aa18.46■□□□□ 0.55
SHH-201ENST00000297261 A2ML1A8K2U0 1454 aa18.46■□□□□ 0.55
SHH-201ENST00000297261 GNAT3A8MTJ3 354 aa18.45■□□□□ 0.54
SHH-201ENST00000297261 TRIM27P14373 513 aa18.45■□□□□ 0.54
SHH-201ENST00000297261 IL16Q14005 1332 aa18.45■□□□□ 0.54
SHH-201ENST00000297261 TEX35Q5T0J7 233 aa18.44■□□□□ 0.54
SHH-201ENST00000297261 MBIPQ9NS73 344 aa18.44■□□□□ 0.54
SHH-201ENST00000297261 SEC24BO95487 1268 aa18.44■□□□□ 0.54
SHH-201ENST00000297261 MAPK8IP2Q13387 824 aaPredicted RBP18.44■□□□□ 0.54
SHH-201ENST00000297261 HDGFL1Q5TGJ6 251 aa18.44■□□□□ 0.54
SHH-201ENST00000297261 RUFY2Q8WXA3 655 aa18.44■□□□□ 0.54
SHH-201ENST00000297261 ALDH1L2Q3SY69 923 aa18.43■□□□□ 0.54
SHH-201ENST00000297261 SIRT1Q96EB6 747 aa18.43■□□□□ 0.54
SHH-201ENST00000297261 HDAC5Q9UQL6 1122 aa18.43■□□□□ 0.54
SHH-201ENST00000297261 FOSBP53539 338 aa18.43■□□□□ 0.54
SHH-201ENST00000297261 KRT28Q7Z3Y7 464 aa18.42■□□□□ 0.54
SHH-201ENST00000297261 C9orf78Q9NZ63 289 aaPredicted RBP18.42■□□□□ 0.54
SHH-201ENST00000297261 GLI2P10070 1586 aa18.42■□□□□ 0.54
SHH-201ENST00000297261 MCM2P49736 904 aa18.41■□□□□ 0.54
SHH-201ENST00000297261 TATP17735 454 aaPredicted RBP18.41■□□□□ 0.54
SHH-201ENST00000297261 AIMP1Q12904 312 aaKnown RBP18.41■□□□□ 0.54
SHH-201ENST00000297261 MNS1Q8NEH6 495 aa18.41■□□□□ 0.54
SHH-201ENST00000297261 TNNQ9UQP3 1299 aa18.41■□□□□ 0.54
SHH-201ENST00000297261 LAMC1P11047 1609 aa18.4■□□□□ 0.54
SHH-201ENST00000297261 RNF123Q5XPI4 1314 aa18.4■□□□□ 0.54
SHH-201ENST00000297261 MAP3K19Q56UN5 1328 aa18.4■□□□□ 0.54
SHH-201ENST00000297261 ROBO2Q9HCK4 1378 aa18.4■□□□□ 0.54
SHH-201ENST00000297261 PLEKHG1Q9ULL1 1385 aa18.4■□□□□ 0.54
SHH-201ENST00000297261 CCDC66A2RUB6 948 aa18.4■□□□□ 0.54
SHH-201ENST00000297261 PDCL2Q8N4E4 241 aa18.4■□□□□ 0.54
SHH-201ENST00000297261 PCDHB15Q9Y5E8 787 aa18.4■□□□□ 0.54
SHH-201ENST00000297261 DIP2BQ9P265 1576 aa18.4■□□□□ 0.54
SHH-201ENST00000297261 TPM3P06753 285 aa18.39■□□□□ 0.54
SHH-201ENST00000297261 GORABQ5T7V8 394 aa18.39■□□□□ 0.54
SHH-201ENST00000297261 VWDEQ8N2E2 1590 aa18.39■□□□□ 0.54
SHH-201ENST00000297261 FRMPD1Q5SYB0 1578 aa18.39■□□□□ 0.53
SHH-201ENST00000297261 ERC2O15083 957 aa18.39■□□□□ 0.53
SHH-201ENST00000297261 IL13P35225 146 aa18.39■□□□□ 0.53
SHH-201ENST00000297261 HSPA2P54652 639 aa18.39■□□□□ 0.53
SHH-201ENST00000297261 GPS2Q13227 327 aa18.39■□□□□ 0.53
SHH-201ENST00000297261 PRDM11Q9NQV5 511 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms