RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 FOXD4L4Q8WXT5 416 aaPredicted RBP33.83■■■■□ 3.01
CBX4-201ENST00000269397 MSH6P52701 1360 aa33.82■■■■□ 3
CBX4-201ENST00000269397 CDK12Q9NYV4 1490 aaPredicted RBP33.81■■■■□ 3
CBX4-201ENST00000269397 REREQ9P2R6 1566 aa33.81■■■■□ 3
CBX4-201ENST00000269397 RRP9O43818 475 aaKnown RBP33.81■■■■□ 3
CBX4-201ENST00000269397 ZSCAN30Q86W11 494 aa33.81■■■■□ 3
CBX4-201ENST00000269397 IBTKQ9P2D0 1353 aaPredicted RBP33.81■■■■□ 3
CBX4-201ENST00000269397 RBSNQ9H1K0 784 aa33.8■■■■□ 3
CBX4-201ENST00000269397 EDC4Q6P2E9 1401 aaKnown RBP33.8■■■■□ 3
CBX4-201ENST00000269397 NEO1Q92859 1461 aa33.8■■■■□ 3
CBX4-201ENST00000269397 WASLO00401 505 aaPredicted RBP33.79■■■■□ 3
CBX4-201ENST00000269397 ST18O60284 1047 aa33.79■■■■□ 3
CBX4-201ENST00000269397 ZNF445P59923 1031 aa33.79■■■■□ 3
CBX4-201ENST00000269397 SULT6B1Q6IMI4 303 aa33.79■■■■□ 3
CBX4-201ENST00000269397 KIAA1211Q6ZU35 1233 aa33.79■■■■□ 3
CBX4-201ENST00000269397 RPAP2Q8IXW5 612 aaPredicted RBP33.79■■■■□ 3
CBX4-201ENST00000269397 CASC1Q6TDU7 716 aa33.78■■■■□ 3
CBX4-201ENST00000269397 ZDHHC9Q9Y397 364 aa33.78■■■■□ 3
CBX4-201ENST00000269397 RGS12O14924 1447 aa33.78■■■■□ 3
CBX4-201ENST00000269397 PRIM1P49642 420 aaKnown RBP33.77■■■■□ 3
CBX4-201ENST00000269397 CPSF1Q10570 1443 aaKnown RBP33.77■■■■□ 3
CBX4-201ENST00000269397 KIF24Q5T7B8 1368 aa33.77■■■■□ 3
CBX4-201ENST00000269397 TXNDC2Q86VQ3 553 aa33.77■■■■□ 3
CBX4-201ENST00000269397 GPT2Q8TD30 523 aa33.77■■■■□ 3
CBX4-201ENST00000269397 RTL1A6NKG5 1358 aa33.77■■■■□ 3
CBX4-201ENST00000269397 MSNP26038 577 aaKnown RBP33.76■■■□□ 2.99
CBX4-201ENST00000269397 MIS18AQ9NYP9 233 aa33.76■■■□□ 2.99
CBX4-201ENST00000269397 NUDT16Q96DE0 195 aaKnown RBP33.75■■■□□ 2.99
CBX4-201ENST00000269397 CPS1P31327 1500 aa33.74■■■□□ 2.99
CBX4-201ENST00000269397 TSHZ3Q63HK5 1081 aa33.74■■■□□ 2.99
CBX4-201ENST00000269397 GLIPR1L2Q4G1C9 344 aa33.74■■■□□ 2.99
CBX4-201ENST00000269397 AATKQ6ZMQ8 1374 aa33.73■■■□□ 2.99
CBX4-201ENST00000269397 CWC22Q9HCG8 908 aaKnown RBP33.73■■■□□ 2.99
CBX4-201ENST00000269397 SLC4A10Q6U841 1118 aa33.72■■■□□ 2.99
CBX4-201ENST00000269397 SLC4A2P04920 1241 aa33.71■■■□□ 2.99
CBX4-201ENST00000269397 VSIG10Q8N0Z9 540 aa33.71■■■□□ 2.99
CBX4-201ENST00000269397 NSFL1CQ9UNZ2 370 aaKnown RBP33.71■■■□□ 2.99
CBX4-201ENST00000269397 REC8O95072 547 aa33.71■■■□□ 2.99
CBX4-201ENST00000269397 EIF4A2Q14240 407 aaKnown RBP33.71■■■□□ 2.99
CBX4-201ENST00000269397 RICTORQ6R327 1708 aa33.7■■■□□ 2.99
CBX4-201ENST00000269397 F6X3S4 739 aa33.7■■■□□ 2.99
CBX4-201ENST00000269397 CHL1O00533 1208 aa33.7■■■□□ 2.99
CBX4-201ENST00000269397 ERC2O15083 957 aa33.69■■■□□ 2.98
CBX4-201ENST00000269397 SOX12O15370 315 aa33.67■■■□□ 2.98
CBX4-201ENST00000269397 TPM2P07951 284 aa33.67■■■□□ 2.98
CBX4-201ENST00000269397 NEK4P51957 841 aa33.67■■■□□ 2.98
CBX4-201ENST00000269397 NOL8Q76FK4 1167 aaKnown RBP33.67■■■□□ 2.98
CBX4-201ENST00000269397 TMEM63CQ9P1W3 806 aa33.67■■■□□ 2.98
CBX4-201ENST00000269397 SYCE3A1L190 88 aa33.66■■■□□ 2.98
CBX4-201ENST00000269397 G2E3Q7L622 706 aa33.66■■■□□ 2.98
CBX4-201ENST00000269397 CCDC61Q9Y6R9 512 aa33.66■■■□□ 2.98
CBX4-201ENST00000269397 OFD1O75665 1012 aa33.65■■■□□ 2.98
CBX4-201ENST00000269397 EXOC6BQ9Y2D4 811 aa33.65■■■□□ 2.98
CBX4-201ENST00000269397 PDE1AP54750 535 aa33.64■■■□□ 2.98
CBX4-201ENST00000269397 ABCF1Q8NE71 845 aaKnown RBP eCLIP33.64■■■□□ 2.98
CBX4-201ENST00000269397 METP08581 1390 aa33.63■■■□□ 2.97
CBX4-201ENST00000269397 DLC1Q96QB1 1528 aa33.63■■■□□ 2.97
CBX4-201ENST00000269397 PTPRCP08575 1304 aa33.62■■■□□ 2.97
CBX4-201ENST00000269397 NUTM2FA1L443 756 aa33.62■■■□□ 2.97
CBX4-201ENST00000269397 TMX3Q96JJ7 454 aa33.62■■■□□ 2.97
CBX4-201ENST00000269397 MLECQ14165 292 aa33.61■■■□□ 2.97
CBX4-201ENST00000269397 HSP90AB2PQ58FF8 381 aa33.61■■■□□ 2.97
CBX4-201ENST00000269397 RIMBP3CA6NJZ7 1639 aa33.61■■■□□ 2.97
CBX4-201ENST00000269397 RIMBP3BA6NNM3 1639 aa33.61■■■□□ 2.97
CBX4-201ENST00000269397 RIMBP3Q9UFD9 1639 aa33.61■■■□□ 2.97
CBX4-201ENST00000269397 A2ML1A8K2U0 1454 aa33.6■■■□□ 2.97
CBX4-201ENST00000269397 HAP1P54257 671 aaPredicted RBP33.6■■■□□ 2.97
CBX4-201ENST00000269397 XPCQ01831 940 aaPredicted RBP33.6■■■□□ 2.97
CBX4-201ENST00000269397 EIF2AK3Q9NZJ5 1116 aaKnown RBP33.6■■■□□ 2.97
CBX4-201ENST00000269397 FOXO3O43524 673 aa33.6■■■□□ 2.97
CBX4-201ENST00000269397 FOXD4L6Q3SYB3 417 aaPredicted RBP33.6■■■□□ 2.97
CBX4-201ENST00000269397 FOXD4L3Q6VB84 417 aaPredicted RBP33.6■■■□□ 2.97
CBX4-201ENST00000269397 RNF214Q8ND24 703 aa33.6■■■□□ 2.97
CBX4-201ENST00000269397 HMMRO75330 724 aa33.59■■■□□ 2.97
CBX4-201ENST00000269397 PDLIM2Q96JY6 352 aa33.59■■■□□ 2.97
CBX4-201ENST00000269397 R3HCC1Q9Y3T6 440 aaKnown RBP33.59■■■□□ 2.97
CBX4-201ENST00000269397 PALD1Q9ULE6 856 aa33.58■■■□□ 2.97
CBX4-201ENST00000269397 PRR36Q9H6K5 1346 aa33.57■■■□□ 2.96
CBX4-201ENST00000269397 PDZRN4Q6ZMN7 1036 aaPredicted RBP33.56■■■□□ 2.96
CBX4-201ENST00000269397 NOL7Q9UMY1 257 aaKnown RBP33.56■■■□□ 2.96
CBX4-201ENST00000269397 RBM10P98175 930 aaKnown RBP33.56■■■□□ 2.96
CBX4-201ENST00000269397 LRSAM1Q6UWE0 723 aa33.56■■■□□ 2.96
CBX4-201ENST00000269397 KIAA0232Q92628 1395 aa33.56■■■□□ 2.96
CBX4-201ENST00000269397 RILPL2Q969X0 211 aa33.54■■■□□ 2.96
CBX4-201ENST00000269397 SETD1AO15047 1707 aaKnown RBP33.53■■■□□ 2.96
CBX4-201ENST00000269397 OSBPL3Q9H4L5 887 aa33.53■■■□□ 2.96
CBX4-201ENST00000269397 ESYT1Q9BSJ8 1104 aa33.52■■■□□ 2.96
CBX4-201ENST00000269397 ZMYND15Q9H091 742 aa33.52■■■□□ 2.96
CBX4-201ENST00000269397 ANO2Q9NQ90 1003 aa33.52■■■□□ 2.96
CBX4-201ENST00000269397 TSPYL4Q9UJ04 414 aa33.52■■■□□ 2.96
CBX4-201ENST00000269397 TRIM6-TRIM34B2RNG4 842 aa33.51■■■□□ 2.96
CBX4-201ENST00000269397 HS1BP3Q53T59 392 aa33.51■■■□□ 2.96
CBX4-201ENST00000269397 NECTIN2Q92692 538 aa33.51■■■□□ 2.95
CBX4-201ENST00000269397 UPF3BQ9BZI7 483 aaKnown RBP33.49■■■□□ 2.95
CBX4-201ENST00000269397 GDPD2Q9HCC8 539 aa33.49■■■□□ 2.95
CBX4-201ENST00000269397 CRB1P82279 1406 aa33.49■■■□□ 2.95
CBX4-201ENST00000269397 GNAI2P04899 355 aa33.48■■■□□ 2.95
CBX4-201ENST00000269397 MON2Q7Z3U7 1717 aa33.48■■■□□ 2.95
CBX4-201ENST00000269397 PNMA6EA0A0J9YXQ4 647 aa33.48■■■□□ 2.95
CBX4-201ENST00000269397 BRD1O95696 1058 aa33.47■■■□□ 2.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms