RNA–Protein interactions for RNA: ENST00000261646.9

SREBF1-201, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SREBF1, Length 4,178 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-201ENST00000261646 NME9Q86XW9 330 aa19.29■□□□□ 0.68
SREBF1-201ENST00000261646 DDX54Q8TDD1 881 aaKnown RBP19.29■□□□□ 0.68
SREBF1-201ENST00000261646 SPATA32Q96LK8 384 aa19.29■□□□□ 0.68
SREBF1-201ENST00000261646 ANTXR1Q9H6X2 564 aa19.29■□□□□ 0.68
SREBF1-201ENST00000261646 SDSP20132 328 aa19.29■□□□□ 0.68
SREBF1-201ENST00000261646 TRERF1Q96PN7 1200 aa19.29■□□□□ 0.68
SREBF1-201ENST00000261646 ZBTB40Q9NUA8 1239 aa19.29■□□□□ 0.68
SREBF1-201ENST00000261646 TULP1O00294 542 aaPredicted RBP19.28■□□□□ 0.68
SREBF1-201ENST00000261646 TSHZ3Q63HK5 1081 aa19.28■□□□□ 0.68
SREBF1-201ENST00000261646 DENND4BO75064 1496 aaPredicted RBP19.28■□□□□ 0.68
SREBF1-201ENST00000261646 PES1O00541 588 aaKnown RBP19.28■□□□□ 0.68
SREBF1-201ENST00000261646 CKAP2LQ8IYA6 745 aa19.28■□□□□ 0.68
SREBF1-201ENST00000261646 SLC26A8Q96RN1 970 aa19.28■□□□□ 0.68
SREBF1-201ENST00000261646 FSD1Q9BTV5 496 aa19.28■□□□□ 0.68
SREBF1-201ENST00000261646 CCDC94Q9BW85 323 aaPredicted RBP19.28■□□□□ 0.68
SREBF1-201ENST00000261646 ZMYM4Q5VZL5 1548 aa19.28■□□□□ 0.68
SREBF1-201ENST00000261646 C16orf71Q8IYS4 520 aaPredicted RBP19.28■□□□□ 0.68
SREBF1-201ENST00000261646 ADGRL1O94910 1474 aa19.28■□□□□ 0.68
SREBF1-201ENST00000261646 MX1P20591 662 aa19.27■□□□□ 0.68
SREBF1-201ENST00000261646 GIMAP6Q6P9H5 292 aa19.27■□□□□ 0.68
SREBF1-201ENST00000261646 C14orf93Q9H972 538 aaKnown RBP19.27■□□□□ 0.68
SREBF1-201ENST00000261646 UHRF1BP1Q6BDS2 1440 aa19.27■□□□□ 0.68
SREBF1-201ENST00000261646 TAF3Q5VWG9 929 aa19.27■□□□□ 0.68
SREBF1-201ENST00000261646 SLC52A1Q9NWF4 448 aa19.27■□□□□ 0.68
SREBF1-201ENST00000261646 ASXL1Q8IXJ9 1541 aa19.27■□□□□ 0.68
SREBF1-201ENST00000261646 CCDC30Q5VVM6 783 aa19.27■□□□□ 0.67
SREBF1-201ENST00000261646 FAM83GA6ND36 823 aa19.26■□□□□ 0.67
SREBF1-201ENST00000261646 CASTP20810 708 aaKnown RBP19.26■□□□□ 0.67
SREBF1-201ENST00000261646 MCM10Q7L590 875 aa19.26■□□□□ 0.67
SREBF1-201ENST00000261646 PDILTQ8N807 584 aa19.26■□□□□ 0.67
SREBF1-201ENST00000261646 PDRG1Q9NUG6 133 aa19.26■□□□□ 0.67
SREBF1-201ENST00000261646 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.26■□□□□ 0.67
SREBF1-201ENST00000261646 CSB-PGBD3P0DP91 1061 aa19.26■□□□□ 0.67
SREBF1-201ENST00000261646 NLRP6P59044 892 aa19.26■□□□□ 0.67
SREBF1-201ENST00000261646 PTPN14Q15678 1187 aa19.26■□□□□ 0.67
SREBF1-201ENST00000261646 NUTM1Q86Y26 1132 aa19.26■□□□□ 0.67
SREBF1-201ENST00000261646 BLMP54132 1417 aaPredicted RBP19.26■□□□□ 0.67
SREBF1-201ENST00000261646 SRCIN1Q9C0H9 1055 aa19.26■□□□□ 0.67
SREBF1-201ENST00000261646 SYNE3Q6ZMZ3 975 aa19.25■□□□□ 0.67
SREBF1-201ENST00000261646 FAM177A1Q8N128 213 aaPredicted RBP19.25■□□□□ 0.67
SREBF1-201ENST00000261646 CHMP4CQ96CF2 233 aa19.25■□□□□ 0.67
SREBF1-201ENST00000261646 TOMM22Q9NS69 142 aa19.25■□□□□ 0.67
SREBF1-201ENST00000261646 UVSSAQ2YD98 709 aa19.25■□□□□ 0.67
SREBF1-201ENST00000261646 HSP90B2PQ58FF3 399 aa19.25■□□□□ 0.67
SREBF1-201ENST00000261646 F6X3S4 739 aa19.24■□□□□ 0.67
SREBF1-201ENST00000261646 SMAP1Q8IYB5 467 aaPredicted RBP19.24■□□□□ 0.67
SREBF1-201ENST00000261646 PIK3C2GO75747 1445 aa19.23■□□□□ 0.67
SREBF1-201ENST00000261646 TRMT1Q9NXH9 659 aaKnown RBP19.23■□□□□ 0.67
SREBF1-201ENST00000261646 CWC15Q9P013 229 aaKnown RBP19.23■□□□□ 0.67
SREBF1-201ENST00000261646 USP48Q86UV5 1035 aa19.23■□□□□ 0.67
SREBF1-201ENST00000261646 ITSN2Q9NZM3 1697 aa19.22■□□□□ 0.67
SREBF1-201ENST00000261646 FANCAO15360 1455 aa19.22■□□□□ 0.67
SREBF1-201ENST00000261646 TPM1P09493 284 aa19.22■□□□□ 0.67
SREBF1-201ENST00000261646 ME1P48163 572 aa19.22■□□□□ 0.67
SREBF1-201ENST00000261646 COL17A1Q9UMD9 1497 aaPredicted RBP19.22■□□□□ 0.67
SREBF1-201ENST00000261646 SRGAP3O43295 1099 aa19.22■□□□□ 0.67
SREBF1-201ENST00000261646 STX6O43752 255 aa19.22■□□□□ 0.67
SREBF1-201ENST00000261646 ZNF445P59923 1031 aa19.22■□□□□ 0.67
SREBF1-201ENST00000261646 CPLX2Q6PUV4 134 aaKnown RBP19.22■□□□□ 0.67
SREBF1-201ENST00000261646 BLOC1S2Q6QNY1 142 aa19.22■□□□□ 0.67
SREBF1-201ENST00000261646 NOC3LQ8WTT2 800 aaKnown RBP19.22■□□□□ 0.67
SREBF1-201ENST00000261646 PLCH2O75038 1416 aa19.21■□□□□ 0.67
SREBF1-201ENST00000261646 POLR3AO14802 1390 aaPredicted RBP19.21■□□□□ 0.67
SREBF1-201ENST00000261646 FYB1O15117 783 aa19.21■□□□□ 0.67
SREBF1-201ENST00000261646 NEXNQ0ZGT2 675 aa19.21■□□□□ 0.67
SREBF1-201ENST00000261646 NOM1Q5C9Z4 860 aaKnown RBP19.21■□□□□ 0.67
SREBF1-201ENST00000261646 TAF7LQ5H9L4 462 aa19.21■□□□□ 0.67
SREBF1-201ENST00000261646 ZSCAN31Q96LW9 406 aaPredicted RBP19.21■□□□□ 0.67
SREBF1-201ENST00000261646 UBE2HP62256 183 aa19.21■□□□□ 0.67
SREBF1-201ENST00000261646 BBXQ8WY36 941 aaPredicted RBP19.21■□□□□ 0.67
SREBF1-201ENST00000261646 TSC1Q92574 1164 aa19.21■□□□□ 0.67
SREBF1-201ENST00000261646 CLIP2Q9UDT6 1046 aa19.21■□□□□ 0.67
SREBF1-201ENST00000261646 UBXN4Q92575 508 aa19.21■□□□□ 0.67
SREBF1-201ENST00000261646 RPGRIP1LQ68CZ1 1315 aa19.2■□□□□ 0.66
SREBF1-201ENST00000261646 RASSF8Q8NHQ8 419 aa19.2■□□□□ 0.66
SREBF1-201ENST00000261646 TFIP11Q9UBB9 837 aaKnown RBP19.2■□□□□ 0.66
SREBF1-201ENST00000261646 LIMCH1Q9UPQ0 1083 aa19.2■□□□□ 0.66
SREBF1-201ENST00000261646 TERF1P54274 439 aa19.2■□□□□ 0.66
SREBF1-201ENST00000261646 SKIDA1Q1XH10 827 aa19.2■□□□□ 0.66
SREBF1-201ENST00000261646 KIF18AQ8NI77 898 aa19.2■□□□□ 0.66
SREBF1-201ENST00000261646 PPP6R1Q9UPN7 881 aa19.2■□□□□ 0.66
SREBF1-201ENST00000261646 ZRANB1Q9UGI0 708 aa19.2■□□□□ 0.66
SREBF1-201ENST00000261646 CNPY2Q9Y2B0 182 aa19.2■□□□□ 0.66
SREBF1-201ENST00000261646 ARHGEF12Q9NZN5 1544 aa19.2■□□□□ 0.66
SREBF1-201ENST00000261646 GCC2Q8IWJ2 1684 aa19.19■□□□□ 0.66
SREBF1-201ENST00000261646 RTEL1-TNFRSF6BF6WH68 1400 aa19.19■□□□□ 0.66
SREBF1-201ENST00000261646 ADGRL2O95490 1459 aa19.19■□□□□ 0.66
SREBF1-201ENST00000261646 HDGFL1Q5TGJ6 251 aa19.19■□□□□ 0.66
SREBF1-201ENST00000261646 PPP1R9BQ96SB3 815 aa19.19■□□□□ 0.66
SREBF1-201ENST00000261646 AIMP1Q12904 312 aaKnown RBP19.19■□□□□ 0.66
SREBF1-201ENST00000261646 C17orf53Q8N3J3 647 aaPredicted RBP19.19■□□□□ 0.66
SREBF1-201ENST00000261646 NUDT16Q96DE0 195 aaKnown RBP19.19■□□□□ 0.66
SREBF1-201ENST00000261646 IL16Q14005 1332 aa19.19■□□□□ 0.66
SREBF1-201ENST00000261646 TSR1Q2NL82 804 aaKnown RBP19.18■□□□□ 0.66
SREBF1-201ENST00000261646 MBIPQ9NS73 344 aa19.18■□□□□ 0.66
SREBF1-201ENST00000261646 CD109Q6YHK3 1445 aa19.18■□□□□ 0.66
SREBF1-201ENST00000261646 TTLL5Q6EMB2 1281 aa19.18■□□□□ 0.66
SREBF1-201ENST00000261646 PRPF40BQ6NWY9 871 aaKnown RBP19.18■□□□□ 0.66
SREBF1-201ENST00000261646 CCDC186Q7Z3E2 898 aa19.18■□□□□ 0.66
SREBF1-201ENST00000261646 USP19O94966 1318 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms