RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Mdc1Q5PSV9 1707 aa20.35■□□□□ 0.85
Shh-201ENSMUST00000002708 NalcnQ8BXR5 1738 aa20.35■□□□□ 0.85
Shh-201ENSMUST00000002708 Triml2E9PW10 424 aa20.35■□□□□ 0.85
Shh-201ENSMUST00000002708 FanclQ9CR14 375 aa20.35■□□□□ 0.85
Shh-201ENSMUST00000002708 Ubr1O70481 1757 aa20.34■□□□□ 0.85
Shh-201ENSMUST00000002708 Kif20aP97329 887 aa20.34■□□□□ 0.85
Shh-201ENSMUST00000002708 Bloc1s4Q8VED2 215 aa20.34■□□□□ 0.85
Shh-201ENSMUST00000002708 Smarca5Q91ZW3 1051 aaKnown RBP20.34■□□□□ 0.85
Shh-201ENSMUST00000002708 Pik3c2aQ61194 1686 aa20.33■□□□□ 0.85
Shh-201ENSMUST00000002708 Rtn4Q99P72 1162 aaKnown RBP20.33■□□□□ 0.85
Shh-201ENSMUST00000002708 Snap23O09044 210 aa20.33■□□□□ 0.84
Shh-201ENSMUST00000002708 Idi1P58044 227 aa20.32■□□□□ 0.84
Shh-201ENSMUST00000002708 Prim1P20664 417 aa20.31■□□□□ 0.84
Shh-201ENSMUST00000002708 Chl1P70232 1209 aa20.31■□□□□ 0.84
Shh-201ENSMUST00000002708 Cabp4Q8VHC5 271 aa20.31■□□□□ 0.84
Shh-201ENSMUST00000002708 Znf335A2A5K6 1337 aa20.31■□□□□ 0.84
Shh-201ENSMUST00000002708 Nckap5lQ6GQX2 1323 aa20.31■□□□□ 0.84
Shh-201ENSMUST00000002708 4930407I10RikD3Z5T8 1512 aa20.3■□□□□ 0.84
Shh-201ENSMUST00000002708 Dennd6aQ8BH65 605 aa20.3■□□□□ 0.84
Shh-201ENSMUST00000002708 Rab11fip3Q8CHD8 1047 aa20.3■□□□□ 0.84
Shh-201ENSMUST00000002708 D430041D05RikF6ZGR6 1678 aa20.3■□□□□ 0.84
Shh-201ENSMUST00000002708 FancaQ9JL70 1439 aa20.3■□□□□ 0.84
Shh-201ENSMUST00000002708 Cdk12Q14AX6 1484 aaKnown RBP20.3■□□□□ 0.84
Shh-201ENSMUST00000002708 CemipQ8BI06 1361 aa20.3■□□□□ 0.84
Shh-201ENSMUST00000002708 Abcc10Q8R4P9 1501 aa20.3■□□□□ 0.84
Shh-201ENSMUST00000002708 Gm21190A0A0G2JGJ6 266 aa20.29■□□□□ 0.84
Shh-201ENSMUST00000002708 Eif4g2Q62448 906 aaKnown RBP20.29■□□□□ 0.84
Shh-201ENSMUST00000002708 CalcaP70160 136 aa20.28■□□□□ 0.84
Shh-201ENSMUST00000002708 EngaseQ8BX80 734 aa20.28■□□□□ 0.84
Shh-201ENSMUST00000002708 HnrnpuQ8VEK3 800 aaKnown RBP20.28■□□□□ 0.84
Shh-201ENSMUST00000002708 Camta1A2A891 1682 aa20.28■□□□□ 0.84
Shh-201ENSMUST00000002708 Rtf1A2AQ19 715 aaKnown RBP20.27■□□□□ 0.84
Shh-201ENSMUST00000002708 Kdm4cQ8VCD7 1054 aa20.27■□□□□ 0.84
Shh-201ENSMUST00000002708 Nlgn1Q99K10 843 aa20.27■□□□□ 0.84
Shh-201ENSMUST00000002708 Arap3Q8R5G7 1538 aa20.27■□□□□ 0.84
Shh-201ENSMUST00000002708 Eya1P97767 591 aa20.27■□□□□ 0.84
Shh-201ENSMUST00000002708 Bag4Q8CI61 457 aa20.26■□□□□ 0.83
Shh-201ENSMUST00000002708 Rrp9Q91WM3 475 aaKnown RBP20.26■□□□□ 0.83
Shh-201ENSMUST00000002708 Chmp4cQ9D7F7 232 aa20.26■□□□□ 0.83
Shh-201ENSMUST00000002708 Trim44Q9QXA7 346 aa20.26■□□□□ 0.83
Shh-201ENSMUST00000002708 Gm10563F6WIE4 79 aa20.26■□□□□ 0.83
Shh-201ENSMUST00000002708 Aldh1l2Q8K009 923 aa20.26■□□□□ 0.83
Shh-201ENSMUST00000002708 Fam13aQ8BGI4 693 aa20.26■□□□□ 0.83
Shh-201ENSMUST00000002708 Col16a1Q8BLX7 1580 aa20.25■□□□□ 0.83
Shh-201ENSMUST00000002708 Tet3Q8BG87 1668 aa20.25■□□□□ 0.83
Shh-201ENSMUST00000002708 Adgrb1Q3UHD1 1582 aa20.25■□□□□ 0.83
Shh-201ENSMUST00000002708 Ccne1Q61457 408 aa20.25■□□□□ 0.83
Shh-201ENSMUST00000002708 Ppip5k2Q6ZQB6 1129 aa20.25■□□□□ 0.83
Shh-201ENSMUST00000002708 Larp1bA0A0A6YXJ7 370 aaKnown RBP20.24■□□□□ 0.83
Shh-201ENSMUST00000002708 Rasa1E9PYG6 1038 aa20.24■□□□□ 0.83
Shh-201ENSMUST00000002708 Casq1O09165 405 aa20.24■□□□□ 0.83
Shh-201ENSMUST00000002708 Prkar2bP31324 416 aa20.24■□□□□ 0.83
Shh-201ENSMUST00000002708 Cgnl1Q6AW69 1298 aa20.24■□□□□ 0.83
Shh-201ENSMUST00000002708 Aldh8a1Q8BH00 487 aa20.24■□□□□ 0.83
Shh-201ENSMUST00000002708 Tm6sf1P58749 370 aa20.24■□□□□ 0.83
Shh-201ENSMUST00000002708 Cc2d1aQ8K1A6 943 aa20.24■□□□□ 0.83
Shh-201ENSMUST00000002708 Ppp6r3Q922D4 844 aa20.24■□□□□ 0.83
Shh-201ENSMUST00000002708 C5P06684 1680 aa20.24■□□□□ 0.83
Shh-201ENSMUST00000002708 Taok2Q6ZQ29 1240 aa20.23■□□□□ 0.83
Shh-201ENSMUST00000002708 Frmpd2A0A140LI67 1392 aa20.23■□□□□ 0.83
Shh-201ENSMUST00000002708 Ap3b2Q9JME5 1082 aa20.23■□□□□ 0.83
Shh-201ENSMUST00000002708 Ncapd2Q8K2Z4 1392 aa20.23■□□□□ 0.83
Shh-201ENSMUST00000002708 Scn7aB1AYL1 1681 aa20.22■□□□□ 0.83
Shh-201ENSMUST00000002708 Sv2bQ8BG39 683 aa20.22■□□□□ 0.83
Shh-201ENSMUST00000002708 Tmx3Q8BXZ1 456 aa20.22■□□□□ 0.83
Shh-201ENSMUST00000002708 Mon2Q80TL7 1715 aa20.22■□□□□ 0.83
Shh-201ENSMUST00000002708 Als2Q920R0 1651 aa20.22■□□□□ 0.83
Shh-201ENSMUST00000002708 CenppQ9CZ92 286 aa20.22■□□□□ 0.83
Shh-201ENSMUST00000002708 Pdia3P27773 505 aaKnown RBP20.21■□□□□ 0.83
Shh-201ENSMUST00000002708 Gcc1Q9D4H2 778 aa20.2■□□□□ 0.82
Shh-201ENSMUST00000002708 Slit2Q9R1B9 1521 aa20.19■□□□□ 0.82
Shh-201ENSMUST00000002708 PtprvP70289 1705 aa20.19■□□□□ 0.82
Shh-201ENSMUST00000002708 Fam83gQ5SWY7 812 aa20.19■□□□□ 0.82
Shh-201ENSMUST00000002708 1700010I14RikQ7TPG0 532 aa20.19■□□□□ 0.82
Shh-201ENSMUST00000002708 PogkQ80TC5 607 aa20.19■□□□□ 0.82
Shh-201ENSMUST00000002708 Phf23Q8BSN5 401 aa20.19■□□□□ 0.82
Shh-201ENSMUST00000002708 Nucb1Q02819 459 aaKnown RBP20.18■□□□□ 0.82
Shh-201ENSMUST00000002708 Gdpd2Q9ESM6 539 aa20.18■□□□□ 0.82
Shh-201ENSMUST00000002708 Tmem94Q7TSH8 1360 aa20.18■□□□□ 0.82
Shh-201ENSMUST00000002708 Tmem132eQ6IEE6 982 aa20.17■□□□□ 0.82
Shh-201ENSMUST00000002708 Hoxc9P09633 260 aa20.17■□□□□ 0.82
Shh-201ENSMUST00000002708 Q3TQI7 289 aaKnown RBP20.17■□□□□ 0.82
Shh-201ENSMUST00000002708 Slc35g1Q8BY79 368 aa20.17■□□□□ 0.82
Shh-201ENSMUST00000002708 Ptpn23Q6PB44 1692 aa20.17■□□□□ 0.82
Shh-201ENSMUST00000002708 Q9D2X8 372 aa20.17■□□□□ 0.82
Shh-201ENSMUST00000002708 Erich6bQ9D4S6 220 aa20.16■□□□□ 0.82
Shh-201ENSMUST00000002708 Gm9992B2RWK3 458 aa20.15■□□□□ 0.82
Shh-201ENSMUST00000002708 Zfp777B9EKF4 885 aa20.15■□□□□ 0.82
Shh-201ENSMUST00000002708 Dhx16G3X8X0 1044 aaKnown RBP20.15■□□□□ 0.82
Shh-201ENSMUST00000002708 Unc93aQ710D3 458 aa20.15■□□□□ 0.82
Shh-201ENSMUST00000002708 Prune1Q8BIW1 454 aa20.15■□□□□ 0.82
Shh-201ENSMUST00000002708 Atg4a-psA0A0G2JFS9 396 aa20.15■□□□□ 0.82
Shh-201ENSMUST00000002708 Zdhhc9P59268 364 aa20.15■□□□□ 0.82
Shh-201ENSMUST00000002708 Atg4aQ8C9S8 396 aa20.15■□□□□ 0.82
Shh-201ENSMUST00000002708 Mcm2P97310 904 aa20.14■□□□□ 0.82
Shh-201ENSMUST00000002708 Cyp27a1Q9DBG1 533 aa20.14■□□□□ 0.82
Shh-201ENSMUST00000002708 Anapc15-psA0A140T8L6 141 aa20.14■□□□□ 0.81
Shh-201ENSMUST00000002708 Isy1Q69ZQ2 285 aaKnown RBP20.14■□□□□ 0.81
Shh-201ENSMUST00000002708 Bcar3Q9QZK2 820 aa20.14■□□□□ 0.81
Shh-201ENSMUST00000002708 Tnnt1O88346 262 aa20.13■□□□□ 0.81
Retrieved 100 of 22,080 RNA–protein pairs in 10.5 ms