RNA–Protein interactions for RNA: YER006W

NUG1, Transcript of GTPase that associates with nuclear 60S pre-ribosomes, yeast

Gene NUG1, Length 1,563 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUG1	YER006W	GLE1	Q12315	538 aa		4.8	□□□□□ -1.64
NUG1	YER006W	EDE1	P34216	1381 aa		4.8	□□□□□ -1.64
NUG1	YER006W	TY4B-P	A0A0B7P3V8	1104 aa		4.79	□□□□□ -1.64
NUG1	YER006W	ENO1	P00924	437 aa	Known RBP	4.79	□□□□□ -1.64
NUG1	YER006W	RPS6A	P0CX37	236 aa	Known RBP	4.79	□□□□□ -1.64
NUG1	YER006W	RPS6B	P0CX38	236 aa	Predicted RBP	4.79	□□□□□ -1.64
NUG1	YER006W	TIF1	P10081	395 aa	Known RBP	4.79	□□□□□ -1.64
NUG1	YER006W	RTG2	P32608	588 aa	Known RBP	4.79	□□□□□ -1.64
NUG1	YER006W	RPT2	P40327	437 aa	Known RBP	4.79	□□□□□ -1.64
NUG1	YER006W	ATG36	P46983	293 aa		4.79	□□□□□ -1.64
NUG1	YER006W	ALD2	P47771	506 aa		4.79	□□□□□ -1.64
NUG1	YER006W	VPS30	Q02948	557 aa		4.79	□□□□□ -1.64
NUG1	YER006W	MDM38	Q08179	573 aa		4.79	□□□□□ -1.64
NUG1	YER006W	CFT2	Q12102	859 aa	Predicted RBP	4.79	□□□□□ -1.64
NUG1	YER006W	YPR053C	Q6Q5F3	151 aa		4.79	□□□□□ -1.64
NUG1	YER006W	RPS31	P05759	152 aa	Known RBP	4.78	□□□□□ -1.64
NUG1	YER006W	TAF13	P11747	167 aa		4.78	□□□□□ -1.64
NUG1	YER006W	SRP54	P20424	541 aa	Known RBP	4.78	□□□□□ -1.64
NUG1	YER006W	SEC20	P28791	383 aa		4.78	□□□□□ -1.64
NUG1	YER006W	SWI3	P32591	825 aa		4.78	□□□□□ -1.64
NUG1	YER006W	NTH2	P35172	780 aa		4.78	□□□□□ -1.64
NUG1	YER006W	SBE2	P42223	864 aa	Known RBP	4.78	□□□□□ -1.64
NUG1	YER006W	VID30	P53076	958 aa		4.78	□□□□□ -1.64
NUG1	YER006W	PAP2	P53632	584 aa	Known RBP	4.78	□□□□□ -1.64
NUG1	YER006W	COG8	Q04632	607 aa		4.78	□□□□□ -1.64
NUG1	YER006W	PDI1	P17967	522 aa	Known RBP	4.78	□□□□□ -1.64
NUG1	YER006W	ROX1	P25042	368 aa		4.78	□□□□□ -1.64
NUG1	YER006W	DJP1	P40564	432 aa		4.78	□□□□□ -1.64
NUG1	YER006W	MTR4	P47047	1073 aa	Known RBP	4.78	□□□□□ -1.64
NUG1	YER006W	YJR008W	P47085	338 aa		4.78	□□□□□ -1.64
NUG1	YER006W	STB3	Q12427	513 aa		4.78	□□□□□ -1.64
NUG1	YER006W	TSC13	Q99190	310 aa		4.78	□□□□□ -1.64
NUG1	YER006W	GPM1	P00950	247 aa	Known RBP	4.77	□□□□□ -1.65
NUG1	YER006W	MCM1	P11746	286 aa		4.77	□□□□□ -1.65
NUG1	YER006W	DAL5	P15365	543 aa		4.77	□□□□□ -1.65
NUG1	YER006W	RPC82	P32349	654 aa		4.77	□□□□□ -1.65
NUG1	YER006W	ZUO1	P32527	433 aa	Known RBP	4.77	□□□□□ -1.65
NUG1	YER006W	TYS1	P36421	394 aa	Known RBP	4.77	□□□□□ -1.65
NUG1	YER006W	AIM21	P40563	679 aa		4.77	□□□□□ -1.65
NUG1	YER006W	SEC27	P41811	889 aa	Known RBP	4.77	□□□□□ -1.65
NUG1	YER006W	RSC8	P43609	557 aa	Known RBP	4.77	□□□□□ -1.65
NUG1	YER006W	TY4A-J	P47023	414 aa		4.77	□□□□□ -1.65
NUG1	YER006W	CCT8	P47079	568 aa	Known RBP	4.77	□□□□□ -1.65
NUG1	YER006W	NOP7	P53261	605 aa	Known RBP	4.77	□□□□□ -1.65
NUG1	YER006W	YNR014W	P53719	212 aa		4.77	□□□□□ -1.65
NUG1	YER006W	ALD3	P54114	506 aa		4.77	□□□□□ -1.65
NUG1	YER006W	RNT1	Q02555	471 aa		4.77	□□□□□ -1.65
NUG1	YER006W	ERV41	Q04651	352 aa		4.77	□□□□□ -1.65
NUG1	YER006W	TDA6	Q06466	467 aa		4.77	□□□□□ -1.65
NUG1	YER006W	GEA1	P47102	1408 aa	Predicted RBP	4.77	□□□□□ -1.65
NUG1	YER006W	PDR5	P33302	1511 aa	Known RBP	4.76	□□□□□ -1.65
NUG1	YER006W	KAR3	P17119	729 aa		4.76	□□□□□ -1.65
NUG1	YER006W	CLB1	P24868	471 aa		4.76	□□□□□ -1.65
NUG1	YER006W	GEF1	P37020	779 aa		4.76	□□□□□ -1.65
NUG1	YER006W	CHZ1	P40019	153 aa	Predicted RBP	4.76	□□□□□ -1.65
NUG1	YER006W	SPR3	P41901	512 aa		4.76	□□□□□ -1.65
NUG1	YER006W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.76	□□□□□ -1.65	not detected
NUG1	YER006W	YMR187C	Q03236	431 aa		4.76	□□□□□ -1.65
NUG1	YER006W	LEU1	P07264	779 aa	Known RBP	4.75	□□□□□ -1.65
NUG1	YER006W	RAD51	P25454	400 aa		4.75	□□□□□ -1.65
NUG1	YER006W	NPR3	P38742	1146 aa		4.75	□□□□□ -1.65
NUG1	YER006W	YTA6	P40328	754 aa		4.75	□□□□□ -1.65
NUG1	YER006W	LEM3	P42838	414 aa		4.75	□□□□□ -1.65
NUG1	YER006W	YNL165W	P53891	406 aa		4.75	□□□□□ -1.65
NUG1	YER006W	TY1B-A	O13527	1196 aa	Known RBP	4.74	□□□□□ -1.65
NUG1	YER006W	PEP12	P32854	288 aa		4.74	□□□□□ -1.65
NUG1	YER006W	SKN7	P38889	622 aa		4.74	□□□□□ -1.65
NUG1	YER006W	AIM20	P40451	204 aa		4.74	□□□□□ -1.65
NUG1	YER006W	ITC1	P53125	1264 aa		4.74	□□□□□ -1.65
NUG1	YER006W	CEF1	Q03654	590 aa	Predicted RBP	4.74	□□□□□ -1.65
NUG1	YER006W	YDR341C	Q05506	607 aa	Known RBP	4.74	□□□□□ -1.65
NUG1	YER006W	GGA1	Q06336	557 aa		4.74	□□□□□ -1.65
NUG1	YER006W	YOR389W	Q08912	624 aa		4.74	□□□□□ -1.65
NUG1	YER006W	LSP1	Q12230	341 aa	Known RBP	4.74	□□□□□ -1.65
NUG1	YER006W	RPP1A	P05318	106 aa	Predicted RBP	4.74	□□□□□ -1.65
NUG1	YER006W	SUP35	P05453	685 aa	Known RBP	4.74	□□□□□ -1.65
NUG1	YER006W	EFB1	P32471	206 aa	Known RBP	4.74	□□□□□ -1.65
NUG1	YER006W	MCX1	P38323	520 aa	Predicted RBP	4.74	□□□□□ -1.65
NUG1	YER006W	BOI2	P39969	1040 aa		4.74	□□□□□ -1.65
NUG1	YER006W	TPM2	P40414	161 aa		4.74	□□□□□ -1.65
NUG1	YER006W	ZDS1	P50111	915 aa	Known RBP	4.74	□□□□□ -1.65
NUG1	YER006W	YLR257W	Q06146	321 aa	Known RBP	4.74	□□□□□ -1.65
NUG1	YER006W	VPS5	Q92331	675 aa		4.74	□□□□□ -1.65
NUG1	YER006W	GCN2	P15442	1659 aa		4.73	□□□□□ -1.65
NUG1	YER006W	CYT1	P07143	309 aa		4.73	□□□□□ -1.65
NUG1	YER006W	KNS1	P32350	737 aa	Predicted RBP	4.73	□□□□□ -1.65
NUG1	YER006W	MET1	P36150	593 aa		4.73	□□□□□ -1.65
NUG1	YER006W	PIM1	P36775	1133 aa		4.73	□□□□□ -1.65
NUG1	YER006W	TCD1	P38756	429 aa		4.73	□□□□□ -1.65
NUG1	YER006W	RPN11	P43588	306 aa	Known RBP	4.73	□□□□□ -1.65
NUG1	YER006W	MEH1	Q02205	184 aa		4.73	□□□□□ -1.65
NUG1	YER006W	VPS60	Q03390	229 aa		4.73	□□□□□ -1.65
NUG1	YER006W	PKH1	Q03407	766 aa		4.73	□□□□□ -1.65
NUG1	YER006W	YML020W	Q03722	664 aa		4.73	□□□□□ -1.65
NUG1	YER006W	TY1A-DR2	Q03964	440 aa	Known RBP	4.73	□□□□□ -1.65
NUG1	YER006W	ESC2	Q06340	456 aa		4.73	□□□□□ -1.65
NUG1	YER006W	Q0182	Q9ZZW1	134 aa		4.73	□□□□□ -1.65
NUG1	YER006W	NOT3	P06102	836 aa	Known RBP	4.72	□□□□□ -1.65
NUG1	YER006W	PDC5	P16467	563 aa	Known RBP	4.72	□□□□□ -1.65
NUG1	YER006W	RGP1	P16664	663 aa		4.72	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 24.8 ms