RNA–Protein interactions for RNA: YEL009C

GCN4, Transcript of bZIP transcriptional activator of amino acid biosynthetic genes, yeast

Gene GCN4, Length 846 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
GCN4	YEL009C	SNO2	P53823	222 aa		4.42	□□□□□ -1.7
GCN4	YEL009C	URN1	Q06525	465 aa	Known RBP	4.42	□□□□□ -1.7
GCN4	YEL009C	RPS13	P05756	151 aa	Known RBP	4.41	□□□□□ -1.7
GCN4	YEL009C	PTC7	P38797	343 aa		4.41	□□□□□ -1.7
GCN4	YEL009C	RRN6	P32786	894 aa		4.4	□□□□□ -1.71
GCN4	YEL009C	SHM2	P37291	469 aa	Known RBP	4.4	□□□□□ -1.71
GCN4	YEL009C	PSY2	P40164	858 aa		4.4	□□□□□ -1.71
GCN4	YEL009C	MEC3	Q02574	474 aa		4.4	□□□□□ -1.71
GCN4	YEL009C	PYC2	P32327	1180 aa	Known RBP	4.39	□□□□□ -1.71
GCN4	YEL009C	SMY2	P32909	740 aa	Known RBP	4.39	□□□□□ -1.71
GCN4	YEL009C	NNK1	P36003	928 aa		4.39	□□□□□ -1.71
GCN4	YEL009C	YPL277C	Q08989	487 aa		4.39	□□□□□ -1.71
GCN4	YEL009C	TTI1	P36097	1038 aa		4.38	□□□□□ -1.71
GCN4	YEL009C	TIF6	Q12522	245 aa	Known RBP	4.38	□□□□□ -1.71
GCN4	YEL009C	REI1	P38344	393 aa	Predicted RBP	4.37	□□□□□ -1.71
GCN4	YEL009C	SUT1	P53032	299 aa	Known RBP	4.37	□□□□□ -1.71
GCN4	YEL009C	YDL177C	Q12257	170 aa		4.37	□□□□□ -1.71
GCN4	YEL009C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.36	□□□□□ -1.71	not detected
GCN4	YEL009C	ETP1	P38748	585 aa	Known RBP	4.36	□□□□□ -1.71
GCN4	YEL009C	GTS1	P40956	396 aa		4.36	□□□□□ -1.71
GCN4	YEL009C	YOR352W	Q08816	343 aa		4.36	□□□□□ -1.71
GCN4	YEL009C	APC11	Q12157	165 aa		4.36	□□□□□ -1.71
GCN4	YEL009C	HTS1	P07263	546 aa	Known RBP	4.35	□□□□□ -1.71
GCN4	YEL009C	CTS1	P29029	562 aa		4.35	□□□□□ -1.71
GCN4	YEL009C	ECM2	P38241	364 aa	Known RBP	4.35	□□□□□ -1.71
GCN4	YEL009C	ENV11	P53246	860 aa		4.35	□□□□□ -1.71
GCN4	YEL009C	ARL1	P38116	183 aa	Known RBP	4.34	□□□□□ -1.71
GCN4	YEL009C	UTP22	P53254	1237 aa	Predicted RBP	4.34	□□□□□ -1.71
GCN4	YEL009C	EAR1	Q03212	550 aa		4.34	□□□□□ -1.71
GCN4	YEL009C	AVO1	Q08236	1176 aa		4.34	□□□□□ -1.71
GCN4	YEL009C	TRM2	P33753	639 aa		4.33	□□□□□ -1.72
GCN4	YEL009C	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.33	□□□□□ -1.72	not detected
GCN4	YEL009C	YML122C	Q03207	126 aa		4.33	□□□□□ -1.72
GCN4	YEL009C	TAT2	P38967	592 aa		4.32	□□□□□ -1.72
GCN4	YEL009C	NPR1	P22211	790 aa		4.31	□□□□□ -1.72
GCN4	YEL009C	ALG6	Q12001	544 aa	Known RBP	4.31	□□□□□ -1.72
GCN4	YEL009C	PUS9	Q12069	462 aa		4.31	□□□□□ -1.72
GCN4	YEL009C	KTR2	P33550	425 aa		4.3	□□□□□ -1.72
GCN4	YEL009C	ELA1	P53861	379 aa	Predicted RBP	4.3	□□□□□ -1.72
GCN4	YEL009C	PUP1	P25043	261 aa		4.29	□□□□□ -1.72
GCN4	YEL009C	MDL2	P33311	773 aa		4.29	□□□□□ -1.72
GCN4	YEL009C	YGR045C	P53229	120 aa		4.29	□□□□□ -1.72
GCN4	YEL009C	PUS7	Q08647	676 aa	Known RBP	4.29	□□□□□ -1.72
GCN4	YEL009C	PRP5	P21372	849 aa	Predicted RBP	4.28	□□□□□ -1.72
GCN4	YEL009C	MSE1	P48525	536 aa		4.28	□□□□□ -1.72
GCN4	YEL009C	CWC15	Q03772	175 aa	Known RBP	4.28	□□□□□ -1.72
GCN4	YEL009C	YHL012W	P38709	493 aa		4.27	□□□□□ -1.73
GCN4	YEL009C	TPP1	Q03796	238 aa		4.27	□□□□□ -1.73
GCN4	YEL009C	PNP1	Q05788	311 aa		4.27	□□□□□ -1.73
GCN4	YEL009C	RIM11	P38615	370 aa		4.26	□□□□□ -1.73
GCN4	YEL009C	DMA2	P53924	522 aa		4.26	□□□□□ -1.73
GCN4	YEL009C	CMR1	Q12510	522 aa	Known RBP	4.26	□□□□□ -1.73
GCN4	YEL009C	LSO1	Q3E827	93 aa		4.26	□□□□□ -1.73
GCN4	YEL009C	SRO9	P25567	434 aa	Known RBP	4.24	□□□□□ -1.73
GCN4	YEL009C	CPS1	P27614	576 aa		4.24	□□□□□ -1.73
GCN4	YEL009C	HNT2	P49775	206 aa		4.24	□□□□□ -1.73
GCN4	YEL009C	SPT20	P50875	604 aa		4.24	□□□□□ -1.73
GCN4	YEL009C	CTR9	P89105	1077 aa		4.24	□□□□□ -1.73
GCN4	YEL009C	NBA1	Q08229	501 aa	Known RBP	4.24	□□□□□ -1.73
GCN4	YEL009C	FUR4	P05316	633 aa	Known RBP	4.23	□□□□□ -1.73
GCN4	YEL009C	LEO1	P38439	464 aa		4.23	□□□□□ -1.73
GCN4	YEL009C	HSE1	P38753	452 aa		4.23	□□□□□ -1.73
GCN4	YEL009C	SAM35	P14693	329 aa		4.22	□□□□□ -1.73
GCN4	YEL009C	RPB10	P22139	70 aa		4.22	□□□□□ -1.73
GCN4	YEL009C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.22	□□□□□ -1.73	not detected
GCN4	YEL009C	AIM26	P32858	118 aa		4.22	□□□□□ -1.73
GCN4	YEL009C	CTF4	Q01454	927 aa		4.22	□□□□□ -1.73
GCN4	YEL009C	YDR132C	Q03900	495 aa		4.22	□□□□□ -1.73
GCN4	YEL009C	SGD1	Q06132	899 aa		4.22	□□□□□ -1.73
GCN4	YEL009C	HRK1	Q08732	759 aa	Known RBP	4.22	□□□□□ -1.73
GCN4	YEL009C	YKL077W	P36081	392 aa		4.21	□□□□□ -1.74
GCN4	YEL009C	PMT7	Q06644	662 aa		4.21	□□□□□ -1.74
GCN4	YEL009C	DOM34	P33309	386 aa		4.2	□□□□□ -1.74
GCN4	YEL009C	LAM1	P38851	1228 aa		4.2	□□□□□ -1.74
GCN4	YEL009C	SHU2	P38957	223 aa		4.2	□□□□□ -1.74
GCN4	YEL009C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
GCN4	YEL009C	GCN5	Q03330	439 aa		4.2	□□□□□ -1.74
GCN4	YEL009C	SPS1	P08458	490 aa		4.19	□□□□□ -1.74
GCN4	YEL009C	HCM1	P25364	564 aa		4.19	□□□□□ -1.74
GCN4	YEL009C	MEF2	P39677	819 aa		4.19	□□□□□ -1.74
GCN4	YEL009C	LAP2	Q10740	671 aa		4.19	□□□□□ -1.74
GCN4	YEL009C	RAD53	P22216	821 aa		4.18	□□□□□ -1.74
GCN4	YEL009C	RET1	P22276	1149 aa	Known RBP	4.18	□□□□□ -1.74
GCN4	YEL009C	PMI40	P29952	429 aa	Known RBP	4.18	□□□□□ -1.74
GCN4	YEL009C	ATG14	P38270	344 aa		4.18	□□□□□ -1.74
GCN4	YEL009C	SAP155	P43612	1002 aa		4.18	□□□□□ -1.74
GCN4	YEL009C	UFD2	P54860	961 aa		4.18	□□□□□ -1.74
GCN4	YEL009C	RSC4	Q02206	625 aa		4.18	□□□□□ -1.74
GCN4	YEL009C	STE11	P23561	717 aa		4.17	□□□□□ -1.74
GCN4	YEL009C	YAR028W	P39548	234 aa		4.17	□□□□□ -1.74
GCN4	YEL009C	YLR257W	Q06146	321 aa	Known RBP	4.17	□□□□□ -1.74
GCN4	YEL009C	AIM21	P40563	679 aa		4.16	□□□□□ -1.74
GCN4	YEL009C	MNN10	P50108	393 aa	Known RBP	4.16	□□□□□ -1.74
GCN4	YEL009C	YML083C	Q04526	418 aa		4.16	□□□□□ -1.74
GCN4	YEL009C	COB	P00163	385 aa		4.15	□□□□□ -1.75
GCN4	YEL009C	SNM1	P40993	198 aa		4.15	□□□□□ -1.75
GCN4	YEL009C	MTR4	P47047	1073 aa	Known RBP	4.15	□□□□□ -1.75
GCN4	YEL009C	SLI1	P53304	468 aa		4.15	□□□□□ -1.75
GCN4	YEL009C	YAF9	P53930	226 aa		4.15	□□□□□ -1.75
GCN4	YEL009C	SUN4	P53616	420 aa		4.14	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms