RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	TPS3	P38426	1054 aa	Known RBP	12.35	□□□□□ -0.43
VPS60	YDR486C	YGL081W	P53156	320 aa		12.35	□□□□□ -0.43
VPS60	YDR486C	LAP2	Q10740	671 aa		12.35	□□□□□ -0.43
VPS60	YDR486C	YPL150W	Q12152	901 aa		12.35	□□□□□ -0.43
VPS60	YDR486C	HCA4	P20448	770 aa	Known RBP	12.34	□□□□□ -0.43
VPS60	YDR486C	RNR3	P21672	869 aa	Known RBP	12.34	□□□□□ -0.43
VPS60	YDR486C	PRX1	P34227	261 aa	Known RBP	12.34	□□□□□ -0.43
VPS60	YDR486C	SPT21	P35209	758 aa		12.34	□□□□□ -0.43
VPS60	YDR486C	FOL1	P53848	824 aa		12.34	□□□□□ -0.43
VPS60	YDR486C	VPS30	Q02948	557 aa		12.34	□□□□□ -0.43
VPS60	YDR486C	TUS1	Q06412	1307 aa		12.34	□□□□□ -0.43
VPS60	YDR486C	SWI4	P25302	1093 aa	Known RBP	12.33	□□□□□ -0.44
VPS60	YDR486C	SPB4	P25808	606 aa	Predicted RBP	12.33	□□□□□ -0.44
VPS60	YDR486C	BMH2	P34730	273 aa	Known RBP	12.33	□□□□□ -0.44
VPS60	YDR486C	RPN10	P38886	268 aa	Known RBP	12.33	□□□□□ -0.44
VPS60	YDR486C	NUC1	P08466	329 aa		12.32	□□□□□ -0.44
VPS60	YDR486C	SAM2	P19358	384 aa	Known RBP	12.32	□□□□□ -0.44
VPS60	YDR486C	SRP54	P20424	541 aa	Known RBP	12.32	□□□□□ -0.44
VPS60	YDR486C	DIT2	P21595	489 aa		12.32	□□□□□ -0.44
VPS60	YDR486C	PNT1	P38969	423 aa		12.32	□□□□□ -0.44
VPS60	YDR486C	BDH2	P39713	417 aa		12.32	□□□□□ -0.44
VPS60	YDR486C	TIF4631	P39935	952 aa	Known RBP	12.32	□□□□□ -0.44
VPS60	YDR486C	ACA1	P39970	489 aa		12.32	□□□□□ -0.44
VPS60	YDR486C	CBP3	P21560	335 aa		12.31	□□□□□ -0.44
VPS60	YDR486C	PES4	P39684	611 aa		12.31	□□□□□ -0.44
VPS60	YDR486C	YIL089W	P40500	205 aa		12.31	□□□□□ -0.44
VPS60	YDR486C	PEX14	P53112	341 aa		12.31	□□□□□ -0.44
VPS60	YDR486C	CLF1	Q12309	687 aa	Predicted RBP	12.31	□□□□□ -0.44
VPS60	YDR486C	KRS1	P15180	591 aa	Known RBP	12.3	□□□□□ -0.44
VPS60	YDR486C	RFC5	P38251	354 aa		12.3	□□□□□ -0.44
VPS60	YDR486C	RXT2	P38255	430 aa		12.3	□□□□□ -0.44
VPS60	YDR486C	HST1	P53685	503 aa		12.3	□□□□□ -0.44
VPS60	YDR486C	EAF7	P53911	425 aa	Known RBP	12.3	□□□□□ -0.44
VPS60	YDR486C	MAL33	P38157	468 aa		12.29	□□□□□ -0.44
VPS60	YDR486C	UBP9	P39967	754 aa		12.29	□□□□□ -0.44
VPS60	YDR486C	PCI8	P40512	444 aa		12.29	□□□□□ -0.44
VPS60	YDR486C	MDM1	Q01846	1127 aa		12.29	□□□□□ -0.44
VPS60	YDR486C	YDR341C	Q05506	607 aa	Known RBP	12.29	□□□□□ -0.44
VPS60	YDR486C	DSE3	Q08729	430 aa		12.29	□□□□□ -0.44
VPS60	YDR486C	GIN4	Q12263	1142 aa		12.29	□□□□□ -0.44
VPS60	YDR486C	HSP82	P02829	709 aa	Known RBP	12.28	□□□□□ -0.44
VPS60	YDR486C	MET6	P05694	767 aa	Known RBP	12.28	□□□□□ -0.44
VPS60	YDR486C	CDC6	P09119	513 aa		12.28	□□□□□ -0.44
VPS60	YDR486C	MBR1	P23493	339 aa		12.28	□□□□□ -0.44
VPS60	YDR486C	MSP1	P28737	362 aa		12.28	□□□□□ -0.44
VPS60	YDR486C	GDE1	Q02979	1223 aa		12.28	□□□□□ -0.44
VPS60	YDR486C	CIT1	P00890	479 aa		12.27	□□□□□ -0.45
VPS60	YDR486C	ERG12	P07277	443 aa		12.27	□□□□□ -0.45
VPS60	YDR486C	VPS1	P21576	704 aa	Known RBP	12.27	□□□□□ -0.45
VPS60	YDR486C	RDS1	P25611	832 aa		12.27	□□□□□ -0.45
VPS60	YDR486C	TOM71	P38825	639 aa	Known RBP	12.27	□□□□□ -0.45
VPS60	YDR486C	VPS45	P38932	577 aa		12.27	□□□□□ -0.45
VPS60	YDR486C	HYR1	P40581	163 aa	Known RBP	12.27	□□□□□ -0.45
VPS60	YDR486C	RRT6	P53117	311 aa	Predicted RBP	12.27	□□□□□ -0.45
VPS60	YDR486C	PEX29	Q03370	554 aa		12.27	□□□□□ -0.45
VPS60	YDR486C	PEX19	Q07418	342 aa		12.27	□□□□□ -0.45
VPS60	YDR486C	STI1	P15705	589 aa	Known RBP RIP-Chip data	12.26	□□□□□ -0.45	not detected
VPS60	YDR486C	HAP5	Q02516	242 aa		12.26	□□□□□ -0.45
VPS60	YDR486C	TYW1	Q08960	810 aa	Known RBP	12.26	□□□□□ -0.45
VPS60	YDR486C	DCS2	Q12123	353 aa		12.26	□□□□□ -0.45
VPS60	YDR486C	SUE1	Q06524	206 aa		12.25	□□□□□ -0.45
VPS60	YDR486C	PGI1	P12709	554 aa	Known RBP	12.24	□□□□□ -0.45
VPS60	YDR486C	CIR1	P42940	261 aa		12.24	□□□□□ -0.45
VPS60	YDR486C	YGL138C	P53122	345 aa		12.24	□□□□□ -0.45
VPS60	YDR486C	PIL1	P53252	339 aa	Known RBP	12.24	□□□□□ -0.45
VPS60	YDR486C	SUB2	Q07478	446 aa	Known RBP	12.24	□□□□□ -0.45
VPS60	YDR486C	GET3	Q12154	354 aa	Known RBP	12.24	□□□□□ -0.45
VPS60	YDR486C	ROX1	P25042	368 aa		12.23	□□□□□ -0.45
VPS60	YDR486C	SOL4	P53315	255 aa		12.23	□□□□□ -0.45
VPS60	YDR486C	GIS4	Q04233	774 aa		12.23	□□□□□ -0.45
VPS60	YDR486C	MYO1	P08964	1928 aa		12.22	□□□□□ -0.45
VPS60	YDR486C	FBP1	P09201	348 aa		12.22	□□□□□ -0.45
VPS60	YDR486C	ASF1	P32447	279 aa		12.22	□□□□□ -0.45
VPS60	YDR486C	OCT1	P35999	772 aa		12.22	□□□□□ -0.45
VPS60	YDR486C	PCS60	P38137	543 aa	Known RBP RIP-Chip data	12.22	□□□□□ -0.45	not detected
VPS60	YDR486C	YML037C	Q03703	340 aa		12.22	□□□□□ -0.45
VPS60	YDR486C	UTP4	Q06679	776 aa	Known RBP	12.22	□□□□□ -0.45
VPS60	YDR486C	KEX1	P09620	729 aa		12.21	□□□□□ -0.45
VPS60	YDR486C	MAK11	P20484	414 aa	Known RBP	12.21	□□□□□ -0.45
VPS60	YDR486C	CCT3	P39077	534 aa	Known RBP	12.21	□□□□□ -0.45
VPS60	YDR486C	SNF7	P39929	240 aa	Known RBP	12.21	□□□□□ -0.45
VPS60	YDR486C	ASE1	P50275	885 aa		12.21	□□□□□ -0.45
VPS60	YDR486C	LSB1	P53281	241 aa		12.21	□□□□□ -0.45
VPS60	YDR486C	NAF1	P53919	492 aa	Known RBP	12.21	□□□□□ -0.45
VPS60	YDR486C	FAP1	P53971	965 aa		12.21	□□□□□ -0.45
VPS60	YDR486C	COG8	Q04632	607 aa		12.21	□□□□□ -0.45
VPS60	YDR486C	CEX1	Q12453	761 aa		12.21	□□□□□ -0.45
VPS60	YDR486C	FRS2	P15625	503 aa	Known RBP	12.2	□□□□□ -0.46
VPS60	YDR486C	YDJ1	P25491	409 aa	Known RBP	12.2	□□□□□ -0.46
VPS60	YDR486C	ELM1	P32801	640 aa		12.2	□□□□□ -0.46
VPS60	YDR486C	LYS14	P40971	790 aa		12.2	□□□□□ -0.46
VPS60	YDR486C	YJL007C	P47080	104 aa		12.2	□□□□□ -0.46
VPS60	YDR486C	VIP1	Q06685	1146 aa	Known RBP	12.2	□□□□□ -0.46
VPS60	YDR486C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	12.2	□□□□□ -0.46	not detected
VPS60	YDR486C	RPL8A	P17076	256 aa	Known RBP	12.19	□□□□□ -0.46
VPS60	YDR486C	SEC20	P28791	383 aa		12.19	□□□□□ -0.46
VPS60	YDR486C	NDT80	P38830	627 aa		12.19	□□□□□ -0.46
VPS60	YDR486C	TPM2	P40414	161 aa		12.19	□□□□□ -0.46
VPS60	YDR486C	RAD18	P10862	487 aa		12.18	□□□□□ -0.46
VPS60	YDR486C	PHO88	P38264	188 aa	Predicted RBP	12.18	□□□□□ -0.46

Retrieved 100 of 5,963 RNA–protein pairs in 22.9 ms