RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W PYC2P32327 1180 aaKnown RBP2.93□□□□□ -1.94
PRP42YDR235W YML122CQ03207 126 aa2.93□□□□□ -1.94
PRP42YDR235W RAD55P38953 406 aa2.93□□□□□ -1.94
PRP42YDR235W GTS1P40956 396 aa2.93□□□□□ -1.94
PRP42YDR235W HGH1P48362 394 aaKnown RBP2.93□□□□□ -1.94
PRP42YDR235W SUT1P53032 299 aaKnown RBP2.93□□□□□ -1.94
PRP42YDR235W IRS4P36115 615 aaKnown RBP2.92□□□□□ -1.94
PRP42YDR235W PSY2P40164 858 aa2.92□□□□□ -1.94
PRP42YDR235W MEC3Q02574 474 aa2.92□□□□□ -1.94
PRP42YDR235W YIG1Q08956 461 aa2.92□□□□□ -1.94
PRP42YDR235W ALG6Q12001 544 aaKnown RBP2.92□□□□□ -1.94
PRP42YDR235W PUF6Q04373 656 aaKnown RBP2.91□□□□□ -1.94
PRP42YDR235W PRE10P21242 288 aaKnown RBP RIP-Chip data2.9□□□□□ -1.94not detected
PRP42YDR235W KTR2P33550 425 aa2.9□□□□□ -1.94
PRP42YDR235W REI1P38344 393 aaPredicted RBP2.9□□□□□ -1.94
PRP42YDR235W SNO2P53823 222 aa2.9□□□□□ -1.94
PRP42YDR235W HTS1P07263 546 aaKnown RBP2.9□□□□□ -1.95
PRP42YDR235W SRS2P12954 1174 aa2.9□□□□□ -1.95
PRP42YDR235W SMY2P32909 740 aaKnown RBP2.9□□□□□ -1.95
PRP42YDR235W FOL2P51601 243 aaKnown RBP2.9□□□□□ -1.95
PRP42YDR235W SMC1P32908 1225 aa2.89□□□□□ -1.95
PRP42YDR235W PUS9Q12069 462 aa2.89□□□□□ -1.95
PRP42YDR235W MPT5P39016 859 aaKnown RBP RIP-Chip data2.88□□□□□ -1.95not detected
PRP42YDR235W ELA1P53861 379 aaPredicted RBP2.88□□□□□ -1.95
PRP42YDR235W APC11Q12157 165 aa2.88□□□□□ -1.95
PRP42YDR235W NNK1P36003 928 aa2.87□□□□□ -1.95
PRP42YDR235W TTI1P36097 1038 aa2.87□□□□□ -1.95
PRP42YDR235W TAT2P38967 592 aa2.87□□□□□ -1.95
PRP42YDR235W UTP22P53254 1237 aaPredicted RBP2.87□□□□□ -1.95
PRP42YDR235W RRN6P32786 894 aa2.86□□□□□ -1.95
PRP42YDR235W TRM2P33753 639 aa2.86□□□□□ -1.95
PRP42YDR235W YGR045CP53229 120 aa2.86□□□□□ -1.95
PRP42YDR235W NPR1P22211 790 aa2.86□□□□□ -1.95
PRP42YDR235W AVO1Q08236 1176 aa2.86□□□□□ -1.95
PRP42YDR235W RPB10P22139 70 aa2.85□□□□□ -1.95
PRP42YDR235W RIM11P38615 370 aa2.85□□□□□ -1.95
PRP42YDR235W SLI1P53304 468 aa2.85□□□□□ -1.95
PRP42YDR235W CTR9P89105 1077 aa2.85□□□□□ -1.95
PRP42YDR235W TPP1Q03796 238 aa2.85□□□□□ -1.95
PRP42YDR235W PUS7Q08647 676 aaKnown RBP2.85□□□□□ -1.95
PRP42YDR235W MSE1P48525 536 aa2.84□□□□□ -1.95
PRP42YDR235W CMR1Q12510 522 aaKnown RBP2.84□□□□□ -1.95
PRP42YDR235W ECM2P38241 364 aaKnown RBP2.83□□□□□ -1.96
PRP42YDR235W SPT20P50875 604 aa2.83□□□□□ -1.96
PRP42YDR235W PRP5P21372 849 aaPredicted RBP2.82□□□□□ -1.96
PRP42YDR235W CWC15Q03772 175 aaKnown RBP2.82□□□□□ -1.96
PRP42YDR235W YDR132CQ03900 495 aa2.82□□□□□ -1.96
PRP42YDR235W YOR352WQ08816 343 aa2.82□□□□□ -1.96
PRP42YDR235W COBP00163 385 aa2.82□□□□□ -1.96
PRP42YDR235W SAM35P14693 329 aa2.82□□□□□ -1.96
PRP42YDR235W YHL012WP38709 493 aa2.82□□□□□ -1.96
PRP42YDR235W PUP1P25043 261 aa2.81□□□□□ -1.96
PRP42YDR235W AIM26P32858 118 aa2.81□□□□□ -1.96
PRP42YDR235W MDL2P33311 773 aa2.81□□□□□ -1.96
PRP42YDR235W PNP1Q05788 311 aa2.81□□□□□ -1.96
PRP42YDR235W DUR3P33413 735 aa2.8□□□□□ -1.96
PRP42YDR235W ARL1P38116 183 aaKnown RBP2.8□□□□□ -1.96
PRP42YDR235W CTF4Q01454 927 aa2.8□□□□□ -1.96
PRP42YDR235W LSO1Q3E827 93 aa2.8□□□□□ -1.96
PRP42YDR235W MEF2P39677 819 aa2.79□□□□□ -1.96
PRP42YDR235W SUN4P53616 420 aa2.79□□□□□ -1.96
PRP42YDR235W GCN5Q03330 439 aa2.79□□□□□ -1.96
PRP42YDR235W SGD1Q06132 899 aa2.79□□□□□ -1.96
PRP42YDR235W RAD53P22216 821 aa2.79□□□□□ -1.96
PRP42YDR235W HCM1P25364 564 aa2.79□□□□□ -1.96
PRP42YDR235W CPS1P27614 576 aa2.79□□□□□ -1.96
PRP42YDR235W LAM1P38851 1228 aa2.79□□□□□ -1.96
PRP42YDR235W NMD3P38861 518 aaKnown RBP2.79□□□□□ -1.96
PRP42YDR235W UBP3Q01477 912 aaKnown RBP RIP-Chip data2.78□□□□□ -1.96not detected
PRP42YDR235W YLR257WQ06146 321 aaKnown RBP2.78□□□□□ -1.96
PRP42YDR235W TY1A-LR4P0C2I8 440 aaKnown RBP2.77□□□□□ -1.97
PRP42YDR235W TY1A-DR6P0CX70 440 aa2.77□□□□□ -1.97
PRP42YDR235W TY1A-ER1P0CX71 440 aa2.77□□□□□ -1.97
PRP42YDR235W TY1A-LR2P0CX72 440 aa2.77□□□□□ -1.97
PRP42YDR235W TY1A-PLP0CX73 440 aa2.77□□□□□ -1.97
PRP42YDR235W TY1A-JR1P0CX74 440 aa2.77□□□□□ -1.97
PRP42YDR235W TY1A-LR3P0CX75 440 aa2.77□□□□□ -1.97
PRP42YDR235W TY1A-ML2P0CX76 440 aa2.77□□□□□ -1.97
PRP42YDR235W ENV11P53246 860 aa2.77□□□□□ -1.97
PRP42YDR235W TY1A-GR1Q12085 440 aa2.77□□□□□ -1.97
PRP42YDR235W TY1A-PR3Q6Q5H1 440 aaKnown RBP2.77□□□□□ -1.97
PRP42YDR235W TY1A-OLQ92392 440 aaKnown RBP2.77□□□□□ -1.97
PRP42YDR235W RET1P22276 1149 aaKnown RBP2.76□□□□□ -1.97
PRP42YDR235W AIM21P40563 679 aa2.76□□□□□ -1.97
PRP42YDR235W URN1Q06525 465 aaKnown RBP2.76□□□□□ -1.97
PRP42YDR235W SPS1P08458 490 aa2.75□□□□□ -1.97
PRP42YDR235W PUF4P25339 888 aaKnown RBP RIP-Chip data2.75□□□□□ -1.97not detected
PRP42YDR235W SRO9P25567 434 aaKnown RBP2.75□□□□□ -1.97
PRP42YDR235W RSC4Q02206 625 aa2.75□□□□□ -1.97
PRP42YDR235W FUR4P05316 633 aaKnown RBP2.75□□□□□ -1.97
PRP42YDR235W PMI40P29952 429 aaKnown RBP2.75□□□□□ -1.97
PRP42YDR235W YKL077WP36081 392 aa2.75□□□□□ -1.97
PRP42YDR235W YAR028WP39548 234 aa2.75□□□□□ -1.97
PRP42YDR235W SAP155P43612 1002 aa2.75□□□□□ -1.97
PRP42YDR235W NTO1Q12311 748 aa2.75□□□□□ -1.97
PRP42YDR235W SNM1P40993 198 aa2.74□□□□□ -1.97
PRP42YDR235W SLS1P42900 643 aa2.74□□□□□ -1.97
PRP42YDR235W HNT2P49775 206 aa2.74□□□□□ -1.97
PRP42YDR235W MCM6P53091 1017 aaKnown RBP2.74□□□□□ -1.97
PRP42YDR235W ROT1Q03691 256 aa2.74□□□□□ -1.97
Retrieved 100 of 5,963 RNA–protein pairs in 31.7 ms