RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C YHL008CP38750 627 aa3.07□□□□□ -1.92
VPS54YDR027C ADP1P25371 1049 aa3.06□□□□□ -1.92
VPS54YDR027C ATG1P53104 897 aa3.06□□□□□ -1.92
VPS54YDR027C ALG6Q12001 544 aaKnown RBP3.06□□□□□ -1.92
VPS54YDR027C RLF2Q12495 606 aa3.06□□□□□ -1.92
VPS54YDR027C PRP5P21372 849 aaPredicted RBP3.06□□□□□ -1.92
VPS54YDR027C OYE3P41816 400 aaPredicted RBP3.06□□□□□ -1.92
VPS54YDR027C ACF4P47129 309 aa3.06□□□□□ -1.92
VPS54YDR027C YNL011CP53980 444 aa3.06□□□□□ -1.92
VPS54YDR027C MSH6Q03834 1242 aa3.06□□□□□ -1.92
VPS54YDR027C MSH4P40965 878 aaPredicted RBP3.06□□□□□ -1.92
VPS54YDR027C BSC2Q05611 235 aa3.06□□□□□ -1.92
VPS54YDR027C DUR3P33413 735 aa3.05□□□□□ -1.92
VPS54YDR027C YKL222CP35995 705 aa3.05□□□□□ -1.92
VPS54YDR027C ALT1P52893 592 aa3.05□□□□□ -1.92
VPS54YDR027C TRS120Q04183 1289 aa3.05□□□□□ -1.92
VPS54YDR027C PMT7Q06644 662 aa3.05□□□□□ -1.92
VPS54YDR027C TRE1Q08919 783 aa3.05□□□□□ -1.92
VPS54YDR027C NFS1P25374 497 aa3.05□□□□□ -1.92
VPS54YDR027C AVO1Q08236 1176 aa3.05□□□□□ -1.92
VPS54YDR027C FLP1P03870 423 aa3.04□□□□□ -1.92
VPS54YDR027C ELA1P53861 379 aaPredicted RBP3.04□□□□□ -1.92
VPS54YDR027C CDC55Q00362 526 aa3.04□□□□□ -1.92
VPS54YDR027C SSY1Q03770 852 aa3.04□□□□□ -1.92
VPS54YDR027C PRO1P32264 428 aa3.03□□□□□ -1.92
VPS54YDR027C SMY2P32909 740 aaKnown RBP3.03□□□□□ -1.92
VPS54YDR027C ARL1P38116 183 aaKnown RBP3.03□□□□□ -1.92
VPS54YDR027C NUT1P53114 1132 aa3.03□□□□□ -1.92
VPS54YDR027C YGR045CP53229 120 aa3.03□□□□□ -1.92
VPS54YDR027C YAF9P53930 226 aa3.03□□□□□ -1.92
VPS54YDR027C EAR1Q03212 550 aa3.03□□□□□ -1.92
VPS54YDR027C YVC1Q12324 675 aa3.03□□□□□ -1.92
VPS54YDR027C MCM5P29496 775 aaKnown RBP3.03□□□□□ -1.92
VPS54YDR027C NNK1P36003 928 aa3.03□□□□□ -1.92
VPS54YDR027C SAP155P43612 1002 aa3.03□□□□□ -1.92
VPS54YDR027C CDA2Q06703 312 aa3.03□□□□□ -1.92
VPS54YDR027C YCR015CP25616 317 aa3.02□□□□□ -1.93
VPS54YDR027C YKL077WP36081 392 aa3.02□□□□□ -1.93
VPS54YDR027C SHU2P38957 223 aa3.02□□□□□ -1.93
VPS54YDR027C ORC3P54790 616 aa3.02□□□□□ -1.93
VPS54YDR027C ESC8Q08119 714 aa3.02□□□□□ -1.93
VPS54YDR027C INP54Q08227 384 aaKnown RBP3.02□□□□□ -1.93
VPS54YDR027C GRS1P38088 690 aaKnown RBP3.01□□□□□ -1.93
VPS54YDR027C PEX7P39108 375 aa3.01□□□□□ -1.93
VPS54YDR027C RVS167P39743 482 aaKnown RBP3.01□□□□□ -1.93
VPS54YDR027C MNL2Q12205 849 aa3.01□□□□□ -1.93
VPS54YDR027C PTC7P38797 343 aa3.01□□□□□ -1.93
VPS54YDR027C MON1P53129 644 aa3.01□□□□□ -1.93
VPS54YDR027C TY1A-LR4P0C2I8 440 aaKnown RBP3□□□□□ -1.93
VPS54YDR027C TY1A-DR6P0CX70 440 aa3□□□□□ -1.93
VPS54YDR027C TY1A-ER1P0CX71 440 aa3□□□□□ -1.93
VPS54YDR027C TY1A-LR2P0CX72 440 aa3□□□□□ -1.93
VPS54YDR027C TY1A-PLP0CX73 440 aa3□□□□□ -1.93
VPS54YDR027C TY1A-JR1P0CX74 440 aa3□□□□□ -1.93
VPS54YDR027C TY1A-LR3P0CX75 440 aa3□□□□□ -1.93
VPS54YDR027C TY1A-ML2P0CX76 440 aa3□□□□□ -1.93
VPS54YDR027C TSA1P34760 196 aaKnown RBP3□□□□□ -1.93
VPS54YDR027C NOC3Q07896 663 aaPredicted RBP3□□□□□ -1.93
VPS54YDR027C TY1A-GR1Q12085 440 aa3□□□□□ -1.93
VPS54YDR027C TY1A-PR3Q6Q5H1 440 aaKnown RBP3□□□□□ -1.93
VPS54YDR027C TY1A-OLQ92392 440 aaKnown RBP3□□□□□ -1.93
VPS54YDR027C GTS1P40956 396 aa3□□□□□ -1.93
VPS54YDR027C TPP1Q03796 238 aa3□□□□□ -1.93
VPS54YDR027C LPX1Q12405 387 aaKnown RBP3□□□□□ -1.93
VPS54YDR027C SSA1P10591 642 aaKnown RBP2.99□□□□□ -1.93
VPS54YDR027C PUS7Q08647 676 aaKnown RBP2.99□□□□□ -1.93
VPS54YDR027C TRL1P09880 827 aaKnown RBP2.99□□□□□ -1.93
VPS54YDR027C SLS1P42900 643 aa2.99□□□□□ -1.93
VPS54YDR027C MTR4P47047 1073 aaKnown RBP2.99□□□□□ -1.93
VPS54YDR027C CDC3P32457 520 aaKnown RBP2.98□□□□□ -1.93
VPS54YDR027C EXO5P38289 585 aa2.98□□□□□ -1.93
VPS54YDR027C GIP4P39732 760 aa2.98□□□□□ -1.93
VPS54YDR027C SAM37P50110 327 aa2.98□□□□□ -1.93
VPS54YDR027C FOL2P51601 243 aaKnown RBP2.98□□□□□ -1.93
VPS54YDR027C DNA2P38859 1522 aa2.98□□□□□ -1.93
VPS54YDR027C ATG14P38270 344 aa2.98□□□□□ -1.93
VPS54YDR027C HSE1P38753 452 aa2.98□□□□□ -1.93
VPS54YDR027C CIC1P38779 376 aaKnown RBP2.98□□□□□ -1.93
VPS54YDR027C YAR028WP39548 234 aa2.98□□□□□ -1.93
VPS54YDR027C PRP6P19735 899 aaPredicted RBP2.97□□□□□ -1.93
VPS54YDR027C AIM3P38266 947 aaKnown RBP2.97□□□□□ -1.93
VPS54YDR027C ERP5P38819 212 aa2.97□□□□□ -1.93
VPS54YDR027C TAF1P46677 1066 aa2.97□□□□□ -1.93
VPS54YDR027C MRPL22P53881 309 aa2.97□□□□□ -1.93
VPS54YDR027C YCS4Q06156 1176 aa2.97□□□□□ -1.93
VPS54YDR027C YBL113CQ7M4S9 792 aa2.97□□□□□ -1.93
VPS54YDR027C THI80P35202 319 aa2.97□□□□□ -1.93
VPS54YDR027C YHL012WP38709 493 aa2.97□□□□□ -1.93
VPS54YDR027C NEM1P38757 446 aa2.97□□□□□ -1.93
VPS54YDR027C YLR257WQ06146 321 aaKnown RBP2.97□□□□□ -1.93
VPS54YDR027C HRK1Q08732 759 aaKnown RBP2.97□□□□□ -1.93
VPS54YDR027C MDJ2P42834 146 aa2.96□□□□□ -1.93
VPS54YDR027C NUT2Q06213 157 aa2.96□□□□□ -1.93
VPS54YDR027C LAP2Q10740 671 aa2.96□□□□□ -1.93
VPS54YDR027C RET1P22276 1149 aaKnown RBP2.96□□□□□ -1.94
VPS54YDR027C ETP1P38748 585 aaKnown RBP2.96□□□□□ -1.94
VPS54YDR027C RIM8P53179 542 aa2.96□□□□□ -1.94
VPS54YDR027C FRT1Q99332 602 aa2.96□□□□□ -1.94
VPS54YDR027C MDL2P33311 773 aa2.96□□□□□ -1.94
VPS54YDR027C FLR1P38124 548 aa2.96□□□□□ -1.94
Retrieved 100 of 5,963 RNA–protein pairs in 22 ms