RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W DIT2P21595 489 aa16.16■□□□□ 0.18
DEP1YAL013W RFC5P38251 354 aa16.16■□□□□ 0.18
DEP1YAL013W KEL1P38853 1164 aaKnown RBP16.16■□□□□ 0.18
DEP1YAL013W RPN10P38886 268 aaKnown RBP16.16■□□□□ 0.18
DEP1YAL013W CBP1P07252 654 aa16.15■□□□□ 0.18
DEP1YAL013W KEX1P09620 729 aa16.15■□□□□ 0.18
DEP1YAL013W RDS1P25611 832 aa16.15■□□□□ 0.18
DEP1YAL013W CHS3P29465 1165 aa16.15■□□□□ 0.18
DEP1YAL013W PES4P39684 611 aa16.15■□□□□ 0.18
DEP1YAL013W YDL124WQ07551 312 aaKnown RBP16.15■□□□□ 0.18
DEP1YAL013W AIM44Q99299 758 aa16.15■□□□□ 0.18
DEP1YAL013W TUS1Q06412 1307 aa16.15■□□□□ 0.18
DEP1YAL013W THS1P04801 734 aaKnown RBP16.14■□□□□ 0.17
DEP1YAL013W PMA1P05030 918 aaKnown RBP16.14■□□□□ 0.17
DEP1YAL013W YBL028CP38202 106 aa16.14■□□□□ 0.17
DEP1YAL013W CLF1Q12309 687 aaPredicted RBP16.14■□□□□ 0.17
DEP1YAL013W PGI1P12709 554 aaKnown RBP16.13■□□□□ 0.17
DEP1YAL013W SRP54P20424 541 aaKnown RBP16.13■□□□□ 0.17
DEP1YAL013W NIT1P40447 199 aa16.13■□□□□ 0.17
DEP1YAL013W KRE33P53914 1056 aaKnown RBP16.13■□□□□ 0.17
DEP1YAL013W HCA4P20448 770 aaKnown RBP16.12■□□□□ 0.17
DEP1YAL013W CST26P38226 397 aa16.12■□□□□ 0.17
DEP1YAL013W RXT2P38255 430 aa16.12■□□□□ 0.17
DEP1YAL013W SNU71P53207 620 aaKnown RBP16.12■□□□□ 0.17
DEP1YAL013W FOL1P53848 824 aa16.12■□□□□ 0.17
DEP1YAL013W COG8Q04632 607 aa16.12■□□□□ 0.17
DEP1YAL013W CDC6P09119 513 aa16.11■□□□□ 0.17
DEP1YAL013W SPB4P25808 606 aaPredicted RBP16.11■□□□□ 0.17
DEP1YAL013W RPL8BP29453 256 aaKnown RBP16.11■□□□□ 0.17
DEP1YAL013W ARL1P38116 183 aaKnown RBP16.11■□□□□ 0.17
DEP1YAL013W PCI8P40512 444 aa16.11■□□□□ 0.17
DEP1YAL013W DCS2Q12123 353 aa16.11■□□□□ 0.17
DEP1YAL013W TUB2P02557 457 aaKnown RBP16.1■□□□□ 0.17
DEP1YAL013W NUC1P08466 329 aa16.1■□□□□ 0.17
DEP1YAL013W GDE1Q02979 1223 aa16.1■□□□□ 0.17
DEP1YAL013W PUS5Q06244 254 aa16.1■□□□□ 0.17
DEP1YAL013W AIM7Q12156 149 aa16.1■□□□□ 0.17
DEP1YAL013W HSP82P02829 709 aaKnown RBP16.09■□□□□ 0.17
DEP1YAL013W CLC1P17891 233 aa16.09■□□□□ 0.17
DEP1YAL013W ACE2P21192 770 aa16.09■□□□□ 0.17
DEP1YAL013W ASF1P32447 279 aa16.09■□□□□ 0.17
DEP1YAL013W TOM71P38825 639 aaKnown RBP16.09■□□□□ 0.17
DEP1YAL013W VPS30Q02948 557 aa16.09■□□□□ 0.17
DEP1YAL013W DSE3Q08729 430 aa16.09■□□□□ 0.17
DEP1YAL013W CSR2Q12734 1121 aa16.09■□□□□ 0.17
DEP1YAL013W MET6P05694 767 aaKnown RBP16.08■□□□□ 0.16
DEP1YAL013W FRS2P15625 503 aaKnown RBP16.08■□□□□ 0.16
DEP1YAL013W VPS1P21576 704 aaKnown RBP16.08■□□□□ 0.16
DEP1YAL013W FAR11P53917 953 aa16.08■□□□□ 0.16
DEP1YAL013W TIF4631P39935 952 aaKnown RBP16.07■□□□□ 0.16
DEP1YAL013W CCT5P40413 562 aaKnown RBP16.07■□□□□ 0.16
DEP1YAL013W MDM1Q01846 1127 aa16.07■□□□□ 0.16
DEP1YAL013W YDR341CQ05506 607 aaKnown RBP16.07■□□□□ 0.16
DEP1YAL013W RFT1P38206 574 aaPredicted RBP16.06■□□□□ 0.16
DEP1YAL013W RVS167P39743 482 aaKnown RBP16.06■□□□□ 0.16
DEP1YAL013W YGL138CP53122 345 aa16.06■□□□□ 0.16
DEP1YAL013W GET3Q12154 354 aaKnown RBP16.06■□□□□ 0.16
DEP1YAL013W DDP1Q99321 188 aaKnown RBP16.06■□□□□ 0.16
DEP1YAL013W RPN12P32496 274 aa16.05■□□□□ 0.16
DEP1YAL013W PIL1P53252 339 aaKnown RBP16.05■□□□□ 0.16
DEP1YAL013W LAP2Q10740 671 aa16.05■□□□□ 0.16
DEP1YAL013W APC11Q12157 165 aa16.05■□□□□ 0.16
DEP1YAL013W KNS1P32350 737 aaPredicted RBP16.04■□□□□ 0.16
DEP1YAL013W RSM25P40496 264 aa16.04■□□□□ 0.16
DEP1YAL013W CEX1Q12453 761 aa16.04■□□□□ 0.16
DEP1YAL013W GAL2P13181 574 aa16.03■□□□□ 0.16
DEP1YAL013W SAM2P19358 384 aaKnown RBP16.03■□□□□ 0.16
DEP1YAL013W TPS3P38426 1054 aaKnown RBP16.03■□□□□ 0.16
DEP1YAL013W PEA2P40091 420 aa16.03■□□□□ 0.16
DEP1YAL013W UBP9P39967 754 aa16.02■□□□□ 0.16
DEP1YAL013W ARP8Q12386 881 aaKnown RBP RIP-Chip data16.02■□□□□ 0.16not detected
DEP1YAL013W CIT1P00890 479 aa16.01■□□□□ 0.15
DEP1YAL013W STI1P15705 589 aaKnown RBP RIP-Chip data16.01■□□□□ 0.15not detected
DEP1YAL013W CCT3P39077 534 aaKnown RBP16.01■□□□□ 0.15
DEP1YAL013W NAF1P53919 492 aaKnown RBP16.01■□□□□ 0.15
DEP1YAL013W VPS45P38932 577 aa16■□□□□ 0.15
DEP1YAL013W MCM3P24279 971 aaKnown RBP15.99■□□□□ 0.15
DEP1YAL013W URA1P28272 314 aaPredicted RBP15.99■□□□□ 0.15
DEP1YAL013W ETT1Q08421 412 aaKnown RBP15.99■□□□□ 0.15
DEP1YAL013W MAK11P20484 414 aaKnown RBP15.98■□□□□ 0.15
DEP1YAL013W ACA1P39970 489 aa15.98■□□□□ 0.15
DEP1YAL013W CWC15Q03772 175 aaKnown RBP15.98■□□□□ 0.15
DEP1YAL013W PTC5Q12511 572 aa15.98■□□□□ 0.15
DEP1YAL013W HXK1P04806 485 aaKnown RBP15.97■□□□□ 0.15
DEP1YAL013W ERG12P07277 443 aa15.97■□□□□ 0.15
DEP1YAL013W DID4P36108 232 aa15.97■□□□□ 0.15
DEP1YAL013W YPT11P48559 417 aa15.97■□□□□ 0.15
DEP1YAL013W SOL4P53315 255 aa15.97■□□□□ 0.15
DEP1YAL013W RET3P53600 189 aa15.97■□□□□ 0.15
DEP1YAL013W GIS4Q04233 774 aa15.97■□□□□ 0.15
DEP1YAL013W KRS1P15180 591 aaKnown RBP15.96■□□□□ 0.15
DEP1YAL013W ASE1P50275 885 aa15.96■□□□□ 0.15
DEP1YAL013W CUE3P53137 624 aaKnown RBP15.96■□□□□ 0.15
DEP1YAL013W SEC20P28791 383 aa15.95■□□□□ 0.14
DEP1YAL013W MCM4P30665 933 aaKnown RBP15.95■□□□□ 0.14
DEP1YAL013W SPT21P35209 758 aa15.95■□□□□ 0.14
DEP1YAL013W RKM3P38222 552 aa15.95■□□□□ 0.14
DEP1YAL013W VHR2P40041 505 aa15.95■□□□□ 0.14
DEP1YAL013W SUE1Q06524 206 aa15.95■□□□□ 0.14
DEP1YAL013W ALG1P16661 449 aa15.94■□□□□ 0.14
Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms