RNA–Protein interactions for RNA: ENST00000639568.1

PTP4A1-207, Transcript of protein tyrosine phosphatase type IVA, member 1, humanhuman

TSL 5

Gene PTP4A1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1-207ENST00000639568 PPARGC1BQ86YN6 1023 aaKnown RBP16.37■□□□□ 0.21
PTP4A1-207ENST00000639568 PHRF1Q9P1Y6 1649 aaKnown RBP16.37■□□□□ 0.21
PTP4A1-207ENST00000639568 COL5A2P05997 1499 aaPredicted RBP16.36■□□□□ 0.21
PTP4A1-207ENST00000639568 PEAK1Q9H792 1746 aa16.36■□□□□ 0.21
PTP4A1-207ENST00000639568 BCL9O00512 1426 aa16.35■□□□□ 0.21
PTP4A1-207ENST00000639568 USP19O94966 1318 aa16.34■□□□□ 0.21
PTP4A1-207ENST00000639568 ACEP12821 1306 aa16.34■□□□□ 0.21
PTP4A1-207ENST00000639568 AATKQ6ZMQ8 1374 aa16.34■□□□□ 0.21
PTP4A1-207ENST00000639568 ATP10DQ9P241 1426 aa16.34■□□□□ 0.21
PTP4A1-207ENST00000639568 SHANK3Q9BYB0 1731 aa16.33■□□□□ 0.21
PTP4A1-207ENST00000639568 EXOC5O00471 708 aa16.33■□□□□ 0.2
PTP4A1-207ENST00000639568 SLC16A10Q8TF71 515 aa16.33■□□□□ 0.2
PTP4A1-207ENST00000639568 LMO7Q8WWI1 1683 aa16.31■□□□□ 0.2
PTP4A1-207ENST00000639568 NLGN2Q8NFZ4 835 aa16.31■□□□□ 0.2
PTP4A1-207ENST00000639568 ZNF526Q8TF50 670 aaPredicted RBP16.31■□□□□ 0.2
PTP4A1-207ENST00000639568 MPHOSPH9Q99550 1183 aa16.31■□□□□ 0.2
PTP4A1-207ENST00000639568 CCDC61Q9Y6R9 512 aa16.31■□□□□ 0.2
PTP4A1-207ENST00000639568 POLR3AO14802 1390 aaPredicted RBP16.3■□□□□ 0.2
PTP4A1-207ENST00000639568 YBX3P16989 372 aaKnown RBP eCLIP16.3■□□□□ 0.2
PTP4A1-207ENST00000639568 CDK19Q9BWU1 502 aa16.3■□□□□ 0.2
PTP4A1-207ENST00000639568 LRRC37A3O60309 1634 aa16.3■□□□□ 0.2
PTP4A1-207ENST00000639568 CAPN15O75808 1086 aa16.29■□□□□ 0.2
PTP4A1-207ENST00000639568 CSB-PGBD3P0DP91 1061 aa16.28■□□□□ 0.2
PTP4A1-207ENST00000639568 ZNF827Q17R98 1081 aa16.28■□□□□ 0.2
PTP4A1-207ENST00000639568 SBF2Q86WG5 1849 aa16.28■□□□□ 0.2
PTP4A1-207ENST00000639568 WDR17Q8IZU2 1322 aa16.27■□□□□ 0.2
PTP4A1-207ENST00000639568 PLEKHG3A1L390 1219 aa16.27■□□□□ 0.2
PTP4A1-207ENST00000639568 ACSBG1Q96GR2 724 aa16.27■□□□□ 0.2
PTP4A1-207ENST00000639568 APLP1P51693 650 aa16.26■□□□□ 0.19
PTP4A1-207ENST00000639568 NLRP6P59044 892 aa16.25■□□□□ 0.19
PTP4A1-207ENST00000639568 ADGRB1O14514 1584 aa16.25■□□□□ 0.19
PTP4A1-207ENST00000639568 CARD10Q9BWT7 1032 aa16.24■□□□□ 0.19
PTP4A1-207ENST00000639568 TFCP2L1Q9NZI6 479 aa16.24■□□□□ 0.19
PTP4A1-207ENST00000639568 ITSN1Q15811 1721 aa16.23■□□□□ 0.19
PTP4A1-207ENST00000639568 AXIN2Q9Y2T1 843 aa16.23■□□□□ 0.19
PTP4A1-207ENST00000639568 BRD4O60885 1362 aaPredicted RBP16.23■□□□□ 0.19
PTP4A1-207ENST00000639568 AKT1S1Q96B36 256 aa16.22■□□□□ 0.19
PTP4A1-207ENST00000639568 LRRC4BQ9NT99 713 aa16.22■□□□□ 0.19
PTP4A1-207ENST00000639568 KDM2AQ9Y2K7 1162 aa16.22■□□□□ 0.19
PTP4A1-207ENST00000639568 PNPLA7Q6ZV29 1317 aa16.2■□□□□ 0.18
PTP4A1-207ENST00000639568 USP6P35125 1406 aa16.2■□□□□ 0.18
PTP4A1-207ENST00000639568 MSH5O43196 834 aa16.2■□□□□ 0.18
PTP4A1-207ENST00000639568 SLC27A3Q5K4L6 730 aa16.2■□□□□ 0.18
PTP4A1-207ENST00000639568 COL13A1Q5TAT6 717 aaPredicted RBP16.2■□□□□ 0.18
PTP4A1-207ENST00000639568 SRPK2P78362 688 aaKnown RBP16.18■□□□□ 0.18
PTP4A1-207ENST00000639568 TNS4Q8IZW8 715 aa16.18■□□□□ 0.18
PTP4A1-207ENST00000639568 DNAJC5GQ8N7S2 189 aa16.18■□□□□ 0.18
PTP4A1-207ENST00000639568 DCAF11Q8TEB1 546 aa16.18■□□□□ 0.18
PTP4A1-207ENST00000639568 ADCY9O60503 1353 aa16.17■□□□□ 0.18
PTP4A1-207ENST00000639568 CCDC7Q96M83 1385 aa16.17■□□□□ 0.18
PTP4A1-207ENST00000639568 PRELPP51888 382 aa16.17■□□□□ 0.18
PTP4A1-207ENST00000639568 TNS2Q63HR2 1409 aa16.17■□□□□ 0.18
PTP4A1-207ENST00000639568 TOPAZ1Q8N9V7 1692 aa16.17■□□□□ 0.18
PTP4A1-207ENST00000639568 PAPPAQ13219 1627 aa16.16■□□□□ 0.18
PTP4A1-207ENST00000639568 AKAP12Q02952 1782 aa16.16■□□□□ 0.18
PTP4A1-207ENST00000639568 KIF3CO14782 793 aa16.15■□□□□ 0.18
PTP4A1-207ENST00000639568 SOX12O15370 315 aa16.15■□□□□ 0.18
PTP4A1-207ENST00000639568 PPIP5K1Q6PFW1 1433 aa16.15■□□□□ 0.18
PTP4A1-207ENST00000639568 KCNH5Q8NCM2 988 aa16.15■□□□□ 0.18
PTP4A1-207ENST00000639568 CPSF1Q10570 1443 aaKnown RBP16.14■□□□□ 0.17
PTP4A1-207ENST00000639568 ARHGEF25Q86VW2 580 aa16.14■□□□□ 0.17
PTP4A1-207ENST00000639568 CD2APQ9Y5K6 639 aa16.14■□□□□ 0.17
PTP4A1-207ENST00000639568 STAC3Q96MF2 364 aa16.13■□□□□ 0.17
PTP4A1-207ENST00000639568 NHSQ6T4R5 1651 aa16.12■□□□□ 0.17
PTP4A1-207ENST00000639568 TOMM70O94826 608 aa16.12■□□□□ 0.17
PTP4A1-207ENST00000639568 SLIT3O75094 1523 aa16.11■□□□□ 0.17
PTP4A1-207ENST00000639568 IL2RBP14784 551 aa16.11■□□□□ 0.17
PTP4A1-207ENST00000639568 KCNQ4P56696 695 aa16.11■□□□□ 0.17
PTP4A1-207ENST00000639568 MSL1Q68DK7 614 aa16.11■□□□□ 0.17
PTP4A1-207ENST00000639568 NLRP2Q9NX02 1062 aa16.11■□□□□ 0.17
PTP4A1-207ENST00000639568 SYTL4Q96C24 671 aaPredicted RBP16.1■□□□□ 0.17
PTP4A1-207ENST00000639568 CABP2Q9NPB3 220 aa16.1■□□□□ 0.17
PTP4A1-207ENST00000639568 CABP1Q9NZU7 370 aa16.1■□□□□ 0.17
PTP4A1-207ENST00000639568 WNK3Q9BYP7 1800 aa16.08■□□□□ 0.17
PTP4A1-207ENST00000639568 COL23A1Q86Y22 540 aaPredicted RBP16.08■□□□□ 0.16
PTP4A1-207ENST00000639568 KLRG1Q96E93 195 aa16.08■□□□□ 0.16
PTP4A1-207ENST00000639568 WWC3Q9ULE0 1092 aa16.07■□□□□ 0.16
PTP4A1-207ENST00000639568 ABCC6O95255 1503 aa16.07■□□□□ 0.16
PTP4A1-207ENST00000639568 ARHGEF28Q8N1W1 1705 aaKnown RBP16.07■□□□□ 0.16
PTP4A1-207ENST00000639568 JMYQ8N9B5 988 aa16.06■□□□□ 0.16
PTP4A1-207ENST00000639568 DDX54Q8TDD1 881 aaKnown RBP16.06■□□□□ 0.16
PTP4A1-207ENST00000639568 CCNL1Q9UK58 526 aaPredicted RBP16.06■□□□□ 0.16
PTP4A1-207ENST00000639568 COL18A1P39060 1754 aa16.05■□□□□ 0.16
PTP4A1-207ENST00000639568 C16orf71Q8IYS4 520 aaPredicted RBP16.04■□□□□ 0.16
PTP4A1-207ENST00000639568 TRPM1Q7Z4N2 1603 aa16.04■□□□□ 0.16
PTP4A1-207ENST00000639568 BTAF1O14981 1849 aa16.03■□□□□ 0.16
PTP4A1-207ENST00000639568 COL24A1Q17RW2 1714 aa16.03■□□□□ 0.16
PTP4A1-207ENST00000639568 IGSF1Q8N6C5 1336 aa16.03■□□□□ 0.16
PTP4A1-207ENST00000639568 PRIM1P49642 420 aaKnown RBP16.03■□□□□ 0.16
PTP4A1-207ENST00000639568 SLC34A2O95436 690 aa16.02■□□□□ 0.16
PTP4A1-207ENST00000639568 HTRA3P83110 453 aa16.02■□□□□ 0.16
PTP4A1-207ENST00000639568 FLAD1Q8NFF5 587 aa16.02■□□□□ 0.16
PTP4A1-207ENST00000639568 QSER1Q2KHR3 1735 aa16.02■□□□□ 0.15
PTP4A1-207ENST00000639568 ERBB3P21860 1342 aa16.01■□□□□ 0.15
PTP4A1-207ENST00000639568 HMGB2P26583 209 aaKnown RBP16.01■□□□□ 0.15
PTP4A1-207ENST00000639568 ZNF692Q9BU19 519 aaPredicted RBP16.01■□□□□ 0.15
PTP4A1-207ENST00000639568 TTC21BQ7Z4L5 1316 aa16■□□□□ 0.15
PTP4A1-207ENST00000639568 RBM46Q8TBY0 533 aaKnown RBP16■□□□□ 0.15
PTP4A1-207ENST00000639568 CENPJQ9HC77 1338 aaPredicted RBP15.99■□□□□ 0.15
PTP4A1-207ENST00000639568 TTC21AQ8NDW8 1320 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms