RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 PRKRIP1Q9H875 184 aaPredicted RBP15.28■□□□□ 0.04
LINC00538-201ENST00000626109 TERF2IPQ9NYB0 399 aa15.28■□□□□ 0.04
LINC00538-201ENST00000626109 UBAP1LF5GYI3 381 aa15.27■□□□□ 0.04
LINC00538-201ENST00000626109 HDGFL2Q7Z4V5 671 aaPredicted RBP15.27■□□□□ 0.04
LINC00538-201ENST00000626109 NGDNQ8NEJ9 315 aaKnown RBP15.27■□□□□ 0.04
LINC00538-201ENST00000626109 ANKRD36BQ8N2N9 1353 aa15.27■□□□□ 0.03
LINC00538-201ENST00000626109 ACEP12821 1306 aa15.26■□□□□ 0.03
LINC00538-201ENST00000626109 BRINP3Q76B58 766 aa15.25■□□□□ 0.03
LINC00538-201ENST00000626109 A0A1W2PP64 1363 aa15.25■□□□□ 0.03
LINC00538-201ENST00000626109 POLR3AO14802 1390 aaPredicted RBP15.25■□□□□ 0.03
LINC00538-201ENST00000626109 CD163L1Q9NR16 1453 aa15.24■□□□□ 0.03
LINC00538-201ENST00000626109 PANK3Q9H999 370 aa15.24■□□□□ 0.03
LINC00538-201ENST00000626109 GPBP1L1Q9HC44 474 aaPredicted RBP15.24■□□□□ 0.03
LINC00538-201ENST00000626109 CPSF1Q10570 1443 aaKnown RBP15.24■□□□□ 0.03
LINC00538-201ENST00000626109 WDR70Q9NW82 654 aa15.23■□□□□ 0.03
LINC00538-201ENST00000626109 KTN1Q86UP2 1357 aaKnown RBP15.23■□□□□ 0.03
LINC00538-201ENST00000626109 NPHP3Q7Z494 1330 aa15.23■□□□□ 0.03
LINC00538-201ENST00000626109 AKAP12Q02952 1782 aa15.22■□□□□ 0.03
LINC00538-201ENST00000626109 ROBO1Q9Y6N7 1651 aa15.22■□□□□ 0.03
LINC00538-201ENST00000626109 FOXO3O43524 673 aa15.22■□□□□ 0.03
LINC00538-201ENST00000626109 PIP4K2BP78356 416 aa15.22■□□□□ 0.03
LINC00538-201ENST00000626109 MRS2Q9HD23 443 aa15.22■□□□□ 0.03
LINC00538-201ENST00000626109 PSME1Q06323 249 aa15.21■□□□□ 0.03
LINC00538-201ENST00000626109 FBXW7Q969H0 707 aa15.21■□□□□ 0.03
LINC00538-201ENST00000626109 USP6P35125 1406 aa15.21■□□□□ 0.03
LINC00538-201ENST00000626109 PLCD4Q9BRC7 762 aa15.21■□□□□ 0.02
LINC00538-201ENST00000626109 NSD3Q9BZ95 1437 aa15.21■□□□□ 0.02
LINC00538-201ENST00000626109 MON2Q7Z3U7 1717 aa15.21■□□□□ 0.02
LINC00538-201ENST00000626109 EDC4Q6P2E9 1401 aaKnown RBP15.2■□□□□ 0.02
LINC00538-201ENST00000626109 BRD4O60885 1362 aaPredicted RBP15.19■□□□□ 0.02
LINC00538-201ENST00000626109 CNPY4Q8N129 248 aa15.19■□□□□ 0.02
LINC00538-201ENST00000626109 KNSTRNQ9Y448 316 aa15.19■□□□□ 0.02
LINC00538-201ENST00000626109 NHSL1Q5SYE7 1610 aa15.19■□□□□ 0.02
LINC00538-201ENST00000626109 ZBED9Q6R2W3 1325 aa15.18■□□□□ 0.02
LINC00538-201ENST00000626109 KRT28Q7Z3Y7 464 aa15.18■□□□□ 0.02
LINC00538-201ENST00000626109 FAM9BQ8IZU0 186 aa15.18■□□□□ 0.02
LINC00538-201ENST00000626109 CARD14Q9BXL6 1004 aa15.18■□□□□ 0.02
LINC00538-201ENST00000626109 XPCQ01831 940 aaPredicted RBP15.17■□□□□ 0.02
LINC00538-201ENST00000626109 DDX17Q92841 729 aaKnown RBP15.17■□□□□ 0.02
LINC00538-201ENST00000626109 NRKQ7Z2Y5 1582 aa15.17■□□□□ 0.02
LINC00538-201ENST00000626109 AHDC1Q5TGY3 1603 aaPredicted RBP15.17■□□□□ 0.02
LINC00538-201ENST00000626109 MYCNP04198 464 aaPredicted RBP15.17■□□□□ 0.02
LINC00538-201ENST00000626109 PXDNQ92626 1479 aa15.17■□□□□ 0.02
LINC00538-201ENST00000626109 TTC21BQ7Z4L5 1316 aa15.16■□□□□ 0.02
LINC00538-201ENST00000626109 TTC21AQ8NDW8 1320 aa15.16■□□□□ 0.02
LINC00538-201ENST00000626109 PAK3O75914 559 aaPredicted RBP15.16■□□□□ 0.02
LINC00538-201ENST00000626109 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.16■□□□□ 0.02
LINC00538-201ENST00000626109 SSH2Q76I76 1423 aa15.16■□□□□ 0.02
LINC00538-201ENST00000626109 CGNL1Q0VF96 1302 aa15.16■□□□□ 0.02
LINC00538-201ENST00000626109 PER1O15534 1290 aaPredicted RBP15.15■□□□□ 0.02
LINC00538-201ENST00000626109 SOS2Q07890 1332 aaPredicted RBP15.15■□□□□ 0.02
LINC00538-201ENST00000626109 IRF5Q13568 498 aa15.15■□□□□ 0.02
LINC00538-201ENST00000626109 SBNO1A3KN83 1393 aa15.15■□□□□ 0.02
LINC00538-201ENST00000626109 TRPM3Q9HCF6 1732 aaPredicted RBP15.14■□□□□ 0.01
LINC00538-201ENST00000626109 CCDC184Q52MB2 194 aa15.13■□□□□ 0.01
LINC00538-201ENST00000626109 PPP4R2Q9NY27 417 aa15.13■□□□□ 0.01
LINC00538-201ENST00000626109 RBM19Q9Y4C8 960 aaKnown RBP15.13■□□□□ 0.01
LINC00538-201ENST00000626109 TNS3Q68CZ2 1445 aa15.13■□□□□ 0.01
LINC00538-201ENST00000626109 PHLPP1O60346 1717 aa15.12■□□□□ 0.01
LINC00538-201ENST00000626109 RETREG2Q8NC44 543 aa15.12■□□□□ 0.01
LINC00538-201ENST00000626109 ANP32EQ9BTT0 268 aa15.12■□□□□ 0.01
LINC00538-201ENST00000626109 NSD2O96028 1365 aa15.12■□□□□ 0.01
LINC00538-201ENST00000626109 NME9Q86XW9 330 aa15.11■□□□□ 0.01
LINC00538-201ENST00000626109 ABTB2Q8N961 1025 aa15.11■□□□□ 0.01
LINC00538-201ENST00000626109 KIF20BQ96Q89 1820 aa15.11■□□□□ 0.01
LINC00538-201ENST00000626109 SPATA31A3Q5VYP0 1347 aa15.11■□□□□ 0.01
LINC00538-201ENST00000626109 NPC1L1Q9UHC9 1359 aa15.11■□□□□ 0.01
LINC00538-201ENST00000626109 SMARCA5O60264 1052 aaPredicted RBP15.11■□□□□ 0.01
LINC00538-201ENST00000626109 ARHGEF10O15013 1369 aa15.1■□□□□ 0.01
LINC00538-201ENST00000626109 FYB1O15117 783 aa15.1■□□□□ 0.01
LINC00538-201ENST00000626109 LRRC59Q96AG4 307 aaKnown RBP15.1■□□□□ 0.01
LINC00538-201ENST00000626109 PIK3C2AO00443 1686 aa15.1■□□□□ 0.01
LINC00538-201ENST00000626109 COL16A1Q07092 1604 aaPredicted RBP15.1■□□□□ 0.01
LINC00538-201ENST00000626109 ALS2Q96Q42 1657 aa15.09■□□□□ 0.01
LINC00538-201ENST00000626109 CC2D1BQ5T0F9 858 aaKnown RBP15.09■□□□□ 0.01
LINC00538-201ENST00000626109 GGNBP2Q9H3C7 697 aa15.09■□□□□ 0.01
LINC00538-201ENST00000626109 CNGB1Q14028 1251 aaPredicted RBP15.09■□□□□ 0.01
LINC00538-201ENST00000626109 COG3Q96JB2 828 aa15.09■□□□□ 0.01
LINC00538-201ENST00000626109 USP31Q70CQ4 1352 aa15.08■□□□□ 0.01
LINC00538-201ENST00000626109 SPDYE4A6NLX3 237 aa15.08■□□□□ 0
LINC00538-201ENST00000626109 NLRP6P59044 892 aa15.08■□□□□ 0
LINC00538-201ENST00000626109 RBM10P98175 930 aaKnown RBP15.08■□□□□ 0
LINC00538-201ENST00000626109 SETQ01105 290 aaPredicted RBP15.08■□□□□ 0
LINC00538-201ENST00000626109 SPOCK2Q92563 424 aa15.08■□□□□ 0
LINC00538-201ENST00000626109 CLUAP1Q96AJ1 413 aa15.08■□□□□ 0
LINC00538-201ENST00000626109 OVOS2A0A0J9YW53 1432 aa15.08■□□□□ 0
LINC00538-201ENST00000626109 OVOS2Q6IE36 1432 aa15.08■□□□□ 0
LINC00538-201ENST00000626109 PTMSP20962 102 aa15.07■□□□□ 0
LINC00538-201ENST00000626109 NUTM2GQ5VZR2 741 aa15.07■□□□□ 0
LINC00538-201ENST00000626109 NLRP13Q86W25 1043 aa15.07■□□□□ 0
LINC00538-201ENST00000626109 ANKRD26Q9UPS8 1709 aa15.07■□□□□ 0
LINC00538-201ENST00000626109 MORC1Q86VD1 984 aa15.07■□□□□ 0
LINC00538-201ENST00000626109 ATF5Q9Y2D1 282 aaPredicted RBP15.07■□□□□ 0
LINC00538-201ENST00000626109 ANAPC15P60006 121 aa15.06■□□□□ 0
LINC00538-201ENST00000626109 KCNV2Q8TDN2 545 aa15.06■□□□□ 0
LINC00538-201ENST00000626109 FBXO41Q8TF61 875 aa15.06■□□□□ 0
LINC00538-201ENST00000626109 ZRANB1Q9UGI0 708 aa15.06■□□□□ 0
LINC00538-201ENST00000626109 USP54Q70EL1 1684 aa15.06■□□□□ 0
LINC00538-201ENST00000626109 NKX1-1Q15270 411 aaPredicted RBP15.05■□□□□ -0
LINC00538-201ENST00000626109 MED1Q15648 1581 aaPredicted RBP15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms