RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 TAOK2Q9UL54 1235 aa15.36■□□□□ 0.05
LIG1-221ENST00000613670 VAMP4O75379 141 aa15.35■□□□□ 0.05
LIG1-221ENST00000613670 ZMYND15Q9H091 742 aa15.35■□□□□ 0.05
LIG1-221ENST00000613670 CROCC2H7BZ55 1655 aa15.35■□□□□ 0.05
LIG1-221ENST00000613670 ZBTB7BO15156 539 aaPredicted RBP15.35■□□□□ 0.05
LIG1-221ENST00000613670 KRT24Q2M2I5 525 aa15.35■□□□□ 0.05
LIG1-221ENST00000613670 TXNDC2Q86VQ3 553 aa15.35■□□□□ 0.05
LIG1-221ENST00000613670 ZGPATQ8N5A5 531 aaKnown RBP15.35■□□□□ 0.05
LIG1-221ENST00000613670 IL16Q14005 1332 aa15.34■□□□□ 0.05
LIG1-221ENST00000613670 AMPHP49418 695 aa15.34■□□□□ 0.05
LIG1-221ENST00000613670 GDPD2Q9HCC8 539 aa15.34■□□□□ 0.05
LIG1-221ENST00000613670 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.34■□□□□ 0.05
LIG1-221ENST00000613670 UGGT1Q9NYU2 1555 aa15.34■□□□□ 0.05
LIG1-221ENST00000613670 F6X3S4 739 aa15.34■□□□□ 0.05
LIG1-221ENST00000613670 CHAF1AQ13111 956 aaPredicted RBP15.34■□□□□ 0.05
LIG1-221ENST00000613670 MRPL50Q8N5N7 158 aaKnown RBP15.34■□□□□ 0.05
LIG1-221ENST00000613670 OTUD7AQ8TE49 926 aaPredicted RBP15.34■□□□□ 0.05
LIG1-221ENST00000613670 CWC22Q9HCG8 908 aaKnown RBP15.34■□□□□ 0.05
LIG1-221ENST00000613670 A0A1W2PP64 1363 aa15.33■□□□□ 0.05
LIG1-221ENST00000613670 PHF14O94880 888 aa15.33■□□□□ 0.05
LIG1-221ENST00000613670 ZSCAN23Q3MJ62 389 aa15.33■□□□□ 0.05
LIG1-221ENST00000613670 SYNMO15061 1565 aa15.33■□□□□ 0.04
LIG1-221ENST00000613670 ADCY10Q96PN6 1610 aa15.33■□□□□ 0.04
LIG1-221ENST00000613670 ZRANB1Q9UGI0 708 aa15.33■□□□□ 0.04
LIG1-221ENST00000613670 UQCRHLA0A096LP55 91 aa15.33■□□□□ 0.04
LIG1-221ENST00000613670 MAP4K4O95819 1239 aaPredicted RBP15.33■□□□□ 0.04
LIG1-221ENST00000613670 UQCRHP07919 91 aa15.33■□□□□ 0.04
LIG1-221ENST00000613670 IFT57Q9NWB7 429 aa15.33■□□□□ 0.04
LIG1-221ENST00000613670 CFAP65Q6ZU64 1925 aaKnown RBP15.32■□□□□ 0.04
LIG1-221ENST00000613670 SDSP20132 328 aa15.32■□□□□ 0.04
LIG1-221ENST00000613670 NSD2O96028 1365 aa15.32■□□□□ 0.04
LIG1-221ENST00000613670 EIF2S2P20042 333 aaKnown RBP15.32■□□□□ 0.04
LIG1-221ENST00000613670 PRIM1P49642 420 aaKnown RBP15.32■□□□□ 0.04
LIG1-221ENST00000613670 TTC22Q5TAA0 569 aa15.32■□□□□ 0.04
LIG1-221ENST00000613670 CHAMP1Q96JM3 812 aa15.32■□□□□ 0.04
LIG1-221ENST00000613670 CCDC39Q9UFE4 941 aa15.31■□□□□ 0.04
LIG1-221ENST00000613670 MBD3O95983 291 aa15.31■□□□□ 0.04
LIG1-221ENST00000613670 CSPP1Q1MSJ5 1256 aa15.31■□□□□ 0.04
LIG1-221ENST00000613670 FBXO31Q5XUX0 539 aaPredicted RBP15.31■□□□□ 0.04
LIG1-221ENST00000613670 NAP1L2Q9ULW6 460 aaPredicted RBP15.31■□□□□ 0.04
LIG1-221ENST00000613670 TTC37Q6PGP7 1564 aa15.31■□□□□ 0.04
LIG1-221ENST00000613670 FGD1P98174 961 aa15.31■□□□□ 0.04
LIG1-221ENST00000613670 RPAP2Q8IXW5 612 aaPredicted RBP15.31■□□□□ 0.04
LIG1-221ENST00000613670 IL1RAPL2Q9NP60 686 aa15.31■□□□□ 0.04
LIG1-221ENST00000613670 POLKQ9UBT6 870 aa15.31■□□□□ 0.04
LIG1-221ENST00000613670 PLEKHM2Q8IWE5 1019 aa15.3■□□□□ 0.04
LIG1-221ENST00000613670 BCL11BQ9C0K0 894 aaPredicted RBP15.3■□□□□ 0.04
LIG1-221ENST00000613670 TSPY26PQ9H489 355 aa15.3■□□□□ 0.04
LIG1-221ENST00000613670 MEIS3Q99687 375 aa15.3■□□□□ 0.04
LIG1-221ENST00000613670 LARP6Q9BRS8 491 aaKnown RBP15.3■□□□□ 0.04
LIG1-221ENST00000613670 FIBPO43427 364 aa15.3■□□□□ 0.04
LIG1-221ENST00000613670 PKP1Q13835 747 aa15.29■□□□□ 0.04
LIG1-221ENST00000613670 NGDNQ8NEJ9 315 aaKnown RBP15.29■□□□□ 0.04
LIG1-221ENST00000613670 SLC52A1Q9NWF4 448 aa15.29■□□□□ 0.04
LIG1-221ENST00000613670 KDM5AP29375 1690 aaKnown RBP15.29■□□□□ 0.04
LIG1-221ENST00000613670 VPS37CA5D8V6 355 aaPredicted RBP15.29■□□□□ 0.04
LIG1-221ENST00000613670 LMOD2Q6P5Q4 547 aa15.29■□□□□ 0.04
LIG1-221ENST00000613670 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.29■□□□□ 0.04
LIG1-221ENST00000613670 ERBB4Q15303 1308 aa15.28■□□□□ 0.04
LIG1-221ENST00000613670 E9PCH4 1651 aa15.27■□□□□ 0.04
LIG1-221ENST00000613670 SURF6O75683 361 aaKnown RBP15.27■□□□□ 0.04
LIG1-221ENST00000613670 GNAI2P04899 355 aa15.27■□□□□ 0.04
LIG1-221ENST00000613670 PLEKHF1Q96S99 279 aa15.27■□□□□ 0.04
LIG1-221ENST00000613670 RBSNQ9H1K0 784 aa15.27■□□□□ 0.04
LIG1-221ENST00000613670 ARHGAP45Q92619 1136 aa15.27■□□□□ 0.03
LIG1-221ENST00000613670 SMC3Q9UQE7 1217 aa15.27■□□□□ 0.03
LIG1-221ENST00000613670 RTEL1-TNFRSF6BF6WH68 1400 aa15.26■□□□□ 0.03
LIG1-221ENST00000613670 NUTM2GQ5VZR2 741 aa15.26■□□□□ 0.03
LIG1-221ENST00000613670 PHF23Q9BUL5 403 aaPredicted RBP15.26■□□□□ 0.03
LIG1-221ENST00000613670 AEBP1Q8IUX7 1158 aa15.26■□□□□ 0.03
LIG1-221ENST00000613670 LRRCC1Q9C099 1032 aa15.26■□□□□ 0.03
LIG1-221ENST00000613670 PREX2Q70Z35 1606 aa15.25■□□□□ 0.03
LIG1-221ENST00000613670 GSPT1P15170 499 aaKnown RBP15.25■□□□□ 0.03
LIG1-221ENST00000613670 USP26Q9BXU7 913 aa15.25■□□□□ 0.03
LIG1-221ENST00000613670 DIAPH3Q9NSV4 1193 aa15.25■□□□□ 0.03
LIG1-221ENST00000613670 ZNF518AQ6AHZ1 1483 aa15.25■□□□□ 0.03
LIG1-221ENST00000613670 PDCL3Q9H2J4 239 aa15.25■□□□□ 0.03
LIG1-221ENST00000613670 DCTPP1Q9H773 170 aa15.25■□□□□ 0.03
LIG1-221ENST00000613670 TMX3Q96JJ7 454 aa15.24■□□□□ 0.03
LIG1-221ENST00000613670 UBTFL1P0CB47 393 aaPredicted RBP15.24■□□□□ 0.03
LIG1-221ENST00000613670 SPC24Q8NBT2 197 aa15.24■□□□□ 0.03
LIG1-221ENST00000613670 NUTM1Q86Y26 1132 aa15.24■□□□□ 0.03
LIG1-221ENST00000613670 NCKAP5LQ9HCH0 1330 aa15.24■□□□□ 0.03
LIG1-221ENST00000613670 MCM2P49736 904 aa15.24■□□□□ 0.03
LIG1-221ENST00000613670 HDGFP51858 240 aaKnown RBP15.24■□□□□ 0.03
LIG1-221ENST00000613670 ANKRD44Q8N8A2 993 aa15.24■□□□□ 0.03
LIG1-221ENST00000613670 DDX54Q8TDD1 881 aaKnown RBP15.24■□□□□ 0.03
LIG1-221ENST00000613670 NUDT16Q96DE0 195 aaKnown RBP15.24■□□□□ 0.03
LIG1-221ENST00000613670 ZNF830Q96NB3 372 aaPredicted RBP15.24■□□□□ 0.03
LIG1-221ENST00000613670 PRDM10Q9NQV6 1147 aa15.23■□□□□ 0.03
LIG1-221ENST00000613670 USP25Q9UHP3 1055 aa15.23■□□□□ 0.03
LIG1-221ENST00000613670 GNAI3P08754 354 aa15.22■□□□□ 0.03
LIG1-221ENST00000613670 IQGAP3Q86VI3 1631 aa15.22■□□□□ 0.03
LIG1-221ENST00000613670 ZMYM3Q14202 1370 aa15.22■□□□□ 0.03
LIG1-221ENST00000613670 DTNBO60941 627 aa15.22■□□□□ 0.03
LIG1-221ENST00000613670 ATP6V1DQ9Y5K8 247 aa15.22■□□□□ 0.03
LIG1-221ENST00000613670 TRPM2O94759 1503 aa15.22■□□□□ 0.03
LIG1-221ENST00000613670 SIRT2Q8IXJ6 389 aa15.22■□□□□ 0.03
LIG1-221ENST00000613670 SBNO2Q9Y2G9 1366 aa15.21■□□□□ 0.03
LIG1-221ENST00000613670 OFD1O75665 1012 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms