RNA–Protein interactions for RNA: ENST00000611132.4

VPS36-207, Transcript of vacuolar protein sorting 36 homolog, humanhuman

TSL 1 (best) BASIC

Gene VPS36, Length 4,607 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-207ENST00000611132 PODXL2Q9NZ53 605 aa17.54■□□□□ 0.4
VPS36-207ENST00000611132 LAMC3Q9Y6N6 1575 aa17.53■□□□□ 0.4
VPS36-207ENST00000611132 SRCIN1Q9C0H9 1055 aa17.53■□□□□ 0.4
VPS36-207ENST00000611132 IL16Q14005 1332 aa17.53■□□□□ 0.4
VPS36-207ENST00000611132 ATAD2Q6PL18 1390 aa17.53■□□□□ 0.4
VPS36-207ENST00000611132 HS1BP3Q53T59 392 aa17.53■□□□□ 0.4
VPS36-207ENST00000611132 CLASRPQ8N2M8 674 aaKnown RBP17.52■□□□□ 0.4
VPS36-207ENST00000611132 MNS1Q8NEH6 495 aa17.52■□□□□ 0.4
VPS36-207ENST00000611132 RPGRIP1LQ68CZ1 1315 aa17.52■□□□□ 0.4
VPS36-207ENST00000611132 KRT85P78386 507 aa17.52■□□□□ 0.4
VPS36-207ENST00000611132 TEFQ10587 303 aa17.52■□□□□ 0.4
VPS36-207ENST00000611132 CBX1P83916 185 aa17.52■□□□□ 0.4
VPS36-207ENST00000611132 G3BP1Q13283 466 aaKnown RBP eCLIP17.52■□□□□ 0.4
VPS36-207ENST00000611132 CCDC30Q5VVM6 783 aa17.52■□□□□ 0.4
VPS36-207ENST00000611132 LRSAM1Q6UWE0 723 aa17.52■□□□□ 0.4
VPS36-207ENST00000611132 UPF3BQ9BZI7 483 aaKnown RBP17.52■□□□□ 0.4
VPS36-207ENST00000611132 ZKSCAN5Q9Y2L8 839 aa17.52■□□□□ 0.4
VPS36-207ENST00000611132 RBM42Q9BTD8 480 aaKnown RBP17.52■□□□□ 0.39
VPS36-207ENST00000611132 USP25Q9UHP3 1055 aa17.52■□□□□ 0.39
VPS36-207ENST00000611132 SMARCA5O60264 1052 aaPredicted RBP17.51■□□□□ 0.39
VPS36-207ENST00000611132 CCDC183Q5T5S1 534 aa17.51■□□□□ 0.39
VPS36-207ENST00000611132 ITSN2Q9NZM3 1697 aa17.51■□□□□ 0.39
VPS36-207ENST00000611132 GAS2L2Q8NHY3 880 aa17.51■□□□□ 0.39
VPS36-207ENST00000611132 TNMDQ9H2S6 317 aa17.51■□□□□ 0.39
VPS36-207ENST00000611132 FBXW7Q969H0 707 aa17.51■□□□□ 0.39
VPS36-207ENST00000611132 NAT10Q9H0A0 1025 aaKnown RBP17.51■□□□□ 0.39
VPS36-207ENST00000611132 CDK19Q9BWU1 502 aa17.5■□□□□ 0.39
VPS36-207ENST00000611132 CYP46A1Q9Y6A2 500 aa17.5■□□□□ 0.39
VPS36-207ENST00000611132 FAM135AQ9P2D6 1515 aa17.5■□□□□ 0.39
VPS36-207ENST00000611132 SULT6B1Q6IMI4 303 aa17.5■□□□□ 0.39
VPS36-207ENST00000611132 GRIN2AQ12879 1464 aa17.5■□□□□ 0.39
VPS36-207ENST00000611132 A0A0G2JS52 829 aa17.49■□□□□ 0.39
VPS36-207ENST00000611132 RAPGEF6Q8TEU7 1601 aa17.49■□□□□ 0.39
VPS36-207ENST00000611132 SDF4Q9BRK5 362 aa17.49■□□□□ 0.39
VPS36-207ENST00000611132 WDR62O43379 1518 aa17.49■□□□□ 0.39
VPS36-207ENST00000611132 EXOC6BQ9Y2D4 811 aa17.49■□□□□ 0.39
VPS36-207ENST00000611132 NSD2O96028 1365 aa17.48■□□□□ 0.39
VPS36-207ENST00000611132 RBM25P49756 843 aaKnown RBP17.48■□□□□ 0.39
VPS36-207ENST00000611132 TTC22Q5TAA0 569 aa17.48■□□□□ 0.39
VPS36-207ENST00000611132 PRIMPOLQ96LW4 560 aa17.48■□□□□ 0.39
VPS36-207ENST00000611132 LARP1BQ659C4 914 aaKnown RBP17.48■□□□□ 0.39
VPS36-207ENST00000611132 NUP62CLQ9H1M0 184 aa17.48■□□□□ 0.39
VPS36-207ENST00000611132 PRIM1P49642 420 aaKnown RBP17.48■□□□□ 0.39
VPS36-207ENST00000611132 KINO60870 393 aaKnown RBP17.47■□□□□ 0.39
VPS36-207ENST00000611132 DMRT2Q9Y5R5 561 aa17.47■□□□□ 0.39
VPS36-207ENST00000611132 CCDC9Q9Y3X0 531 aaKnown RBP17.47■□□□□ 0.39
VPS36-207ENST00000611132 EIF2AK4Q9P2K8 1649 aaKnown RBP17.47■□□□□ 0.39
VPS36-207ENST00000611132 GDPD2Q9HCC8 539 aa17.46■□□□□ 0.39
VPS36-207ENST00000611132 FOSBP53539 338 aa17.46■□□□□ 0.39
VPS36-207ENST00000611132 NEXNQ0ZGT2 675 aa17.46■□□□□ 0.39
VPS36-207ENST00000611132 ZBTB40Q9NUA8 1239 aa17.46■□□□□ 0.39
VPS36-207ENST00000611132 NPC1L1Q9UHC9 1359 aa17.46■□□□□ 0.39
VPS36-207ENST00000611132 ARHGAP45Q92619 1136 aa17.46■□□□□ 0.39
VPS36-207ENST00000611132 NPHP1O15259 732 aa17.45■□□□□ 0.38
VPS36-207ENST00000611132 MX1P20591 662 aa17.45■□□□□ 0.38
VPS36-207ENST00000611132 UVSSAQ2YD98 709 aa17.45■□□□□ 0.38
VPS36-207ENST00000611132 ZSCAN31Q96LW9 406 aaPredicted RBP17.45■□□□□ 0.38
VPS36-207ENST00000611132 ADCY5O95622 1261 aa17.45■□□□□ 0.38
VPS36-207ENST00000611132 MAP3K11Q16584 847 aa17.45■□□□□ 0.38
VPS36-207ENST00000611132 ZHX1Q9UKY1 873 aaPredicted RBP17.45■□□□□ 0.38
VPS36-207ENST00000611132 CARD14Q9BXL6 1004 aa17.44■□□□□ 0.38
VPS36-207ENST00000611132 CPLX1O14810 134 aa17.44■□□□□ 0.38
VPS36-207ENST00000611132 FSD1Q9BTV5 496 aa17.44■□□□□ 0.38
VPS36-207ENST00000611132 IL1RAPL2Q9NP60 686 aa17.44■□□□□ 0.38
VPS36-207ENST00000611132 MAP4K4O95819 1239 aaPredicted RBP17.44■□□□□ 0.38
VPS36-207ENST00000611132 CPLX2Q6PUV4 134 aaKnown RBP17.44■□□□□ 0.38
VPS36-207ENST00000611132 HIP1O00291 1037 aa17.43■□□□□ 0.38
VPS36-207ENST00000611132 ADGRL2O95490 1459 aa17.43■□□□□ 0.38
VPS36-207ENST00000611132 PDRG1Q9NUG6 133 aa17.43■□□□□ 0.38
VPS36-207ENST00000611132 DDX58O95786 925 aaKnown RBP17.43■□□□□ 0.38
VPS36-207ENST00000611132 PDIA4P13667 645 aaKnown RBP17.43■□□□□ 0.38
VPS36-207ENST00000611132 PPP4R3BQ5MIZ7 849 aa17.43■□□□□ 0.38
VPS36-207ENST00000611132 TMX3Q96JJ7 454 aa17.43■□□□□ 0.38
VPS36-207ENST00000611132 KDM6BO15054 1643 aa17.43■□□□□ 0.38
VPS36-207ENST00000611132 CREBRFQ8IUR6 639 aa17.42■□□□□ 0.38
VPS36-207ENST00000611132 SPATA32Q96LK8 384 aa17.42■□□□□ 0.38
VPS36-207ENST00000611132 JAKMIP1Q96N16 626 aaKnown RBP17.42■□□□□ 0.38
VPS36-207ENST00000611132 ANKRD1Q15327 319 aa17.42■□□□□ 0.38
VPS36-207ENST00000611132 TAF3Q5VWG9 929 aa17.42■□□□□ 0.38
VPS36-207ENST00000611132 MAGI3Q5TCQ9 1506 aa17.42■□□□□ 0.38
VPS36-207ENST00000611132 FSD2A1L4K1 749 aa17.42■□□□□ 0.38
VPS36-207ENST00000611132 SHANK2Q9UPX8 1470 aa17.42■□□□□ 0.38
VPS36-207ENST00000611132 TPM1P09493 284 aa17.41■□□□□ 0.38
VPS36-207ENST00000611132 SDSP20132 328 aa17.41■□□□□ 0.38
VPS36-207ENST00000611132 DCTN1Q14203 1278 aa17.41■□□□□ 0.38
VPS36-207ENST00000611132 C1orf141Q5JVX7 400 aa17.41■□□□□ 0.38
VPS36-207ENST00000611132 SYNE3Q6ZMZ3 975 aa17.41■□□□□ 0.38
VPS36-207ENST00000611132 TAF7LQ5H9L4 462 aa17.41■□□□□ 0.38
VPS36-207ENST00000611132 NOL7Q9UMY1 257 aaKnown RBP17.41■□□□□ 0.38
VPS36-207ENST00000611132 SMC2O95347 1197 aa17.41■□□□□ 0.38
VPS36-207ENST00000611132 CWC27Q6UX04 472 aaKnown RBP17.41■□□□□ 0.38
VPS36-207ENST00000611132 PPP6R1Q9UPN7 881 aa17.41■□□□□ 0.38
VPS36-207ENST00000611132 NOLC1Q14978 699 aaKnown RBP eCLIP17.41■□□□□ 0.38
VPS36-207ENST00000611132 A2MP01023 1474 aa17.41■□□□□ 0.38
VPS36-207ENST00000611132 KDM5CP41229 1560 aa17.4■□□□□ 0.38
VPS36-207ENST00000611132 SAMD9Q5K651 1589 aa17.4■□□□□ 0.38
VPS36-207ENST00000611132 EID1Q9Y6B2 187 aa17.4■□□□□ 0.38
VPS36-207ENST00000611132 ZMYM3Q14202 1370 aa17.4■□□□□ 0.38
VPS36-207ENST00000611132 CEBPZQ03701 1054 aaKnown RBP17.4■□□□□ 0.38
VPS36-207ENST00000611132 RRS1Q15050 365 aaKnown RBP17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms