RNA–Protein interactions for RNA: ENST00000606752.1

USP6NL-204, Transcript of USP6 N-terminal like, humanhuman

TSL 1 (best)

Gene USP6NL, Length 1,823 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP6NL-204ENST00000606752 KCNH5Q8NCM2 988 aa28.32■■■□□ 2.12
USP6NL-204ENST00000606752 WDR63Q8IWG1 891 aa28.31■■■□□ 2.12
USP6NL-204ENST00000606752 RNF123Q5XPI4 1314 aa28.3■■■□□ 2.12
USP6NL-204ENST00000606752 RCAN3Q9UKA8 241 aa28.3■■■□□ 2.12
USP6NL-204ENST00000606752 NPHP3Q7Z494 1330 aa28.3■■■□□ 2.12
USP6NL-204ENST00000606752 SPINK5Q9NQ38 1064 aaPredicted RBP28.29■■■□□ 2.12
USP6NL-204ENST00000606752 TRPM3Q9HCF6 1732 aaPredicted RBP28.27■■■□□ 2.12
USP6NL-204ENST00000606752 HOXC9P31274 260 aa28.27■■■□□ 2.12
USP6NL-204ENST00000606752 LMOD2Q6P5Q4 547 aa28.27■■■□□ 2.12
USP6NL-204ENST00000606752 SLAIN2Q9P270 581 aa28.27■■■□□ 2.12
USP6NL-204ENST00000606752 RIPK4P57078 832 aa28.25■■■□□ 2.11
USP6NL-204ENST00000606752 GCP02774 474 aa28.24■■■□□ 2.11
USP6NL-204ENST00000606752 BRINP3Q76B58 766 aa28.24■■■□□ 2.11
USP6NL-204ENST00000606752 DDX17Q92841 729 aaKnown RBP28.24■■■□□ 2.11
USP6NL-204ENST00000606752 PHACTR3Q96KR7 559 aa28.24■■■□□ 2.11
USP6NL-204ENST00000606752 USP19O94966 1318 aa28.24■■■□□ 2.11
USP6NL-204ENST00000606752 RTL1A6NKG5 1358 aa28.23■■■□□ 2.11
USP6NL-204ENST00000606752 SULT6B1Q6IMI4 303 aa28.23■■■□□ 2.11
USP6NL-204ENST00000606752 TRIM35Q9UPQ4 493 aa28.23■■■□□ 2.11
USP6NL-204ENST00000606752 NFAT5O94916 1531 aa28.23■■■□□ 2.11
USP6NL-204ENST00000606752 IRX6P78412 446 aaPredicted RBP28.21■■■□□ 2.11
USP6NL-204ENST00000606752 NFE2L2Q16236 605 aa28.21■■■□□ 2.11
USP6NL-204ENST00000606752 IP6K1Q92551 441 aa28.21■■■□□ 2.11
USP6NL-204ENST00000606752 ERICH6BQ5W0A0 696 aa28.2■■■□□ 2.11
USP6NL-204ENST00000606752 SLIT3O75094 1523 aa28.2■■■□□ 2.1
USP6NL-204ENST00000606752 ARHGEF10O15013 1369 aa28.2■■■□□ 2.1
USP6NL-204ENST00000606752 AEBP1Q8IUX7 1158 aa28.2■■■□□ 2.1
USP6NL-204ENST00000606752 ARHGEF25Q86VW2 580 aa28.17■■■□□ 2.1
USP6NL-204ENST00000606752 EYA1Q99502 592 aa28.17■■■□□ 2.1
USP6NL-204ENST00000606752 RGPD1P0DJD0 1748 aa28.17■■■□□ 2.1
USP6NL-204ENST00000606752 PXDNQ92626 1479 aa28.17■■■□□ 2.1
USP6NL-204ENST00000606752 ALS2Q96Q42 1657 aa28.16■■■□□ 2.1
USP6NL-204ENST00000606752 IGSF1Q8N6C5 1336 aa28.16■■■□□ 2.1
USP6NL-204ENST00000606752 MYH16Q9H6N6 1097 aa28.15■■■□□ 2.1
USP6NL-204ENST00000606752 RRP1P56182 461 aaKnown RBP28.15■■■□□ 2.1
USP6NL-204ENST00000606752 IL16Q14005 1332 aa28.15■■■□□ 2.1
USP6NL-204ENST00000606752 SPATA31A3Q5VYP0 1347 aa28.15■■■□□ 2.1
USP6NL-204ENST00000606752 TNS3Q68CZ2 1445 aa28.14■■■□□ 2.1
USP6NL-204ENST00000606752 KDRP35968 1356 aa28.13■■■□□ 2.09
USP6NL-204ENST00000606752 PLEKHG5O94827 1062 aa28.13■■■□□ 2.09
USP6NL-204ENST00000606752 LTN1O94822 1766 aa28.12■■■□□ 2.09
USP6NL-204ENST00000606752 LTV1Q96GA3 475 aaPredicted RBP28.11■■■□□ 2.09
USP6NL-204ENST00000606752 ZBTB7CA1YPR0 619 aa28.11■■■□□ 2.09
USP6NL-204ENST00000606752 LMOD3Q0VAK6 560 aa28.11■■■□□ 2.09
USP6NL-204ENST00000606752 PHRF1Q9P1Y6 1649 aaKnown RBP28.1■■■□□ 2.09
USP6NL-204ENST00000606752 SOS2Q07890 1332 aaPredicted RBP28.1■■■□□ 2.09
USP6NL-204ENST00000606752 MED1Q15648 1581 aaPredicted RBP28.07■■■□□ 2.08
USP6NL-204ENST00000606752 CALD1Q05682 793 aaKnown RBP28.07■■■□□ 2.08
USP6NL-204ENST00000606752 ZC3H6P61129 1189 aaKnown RBP28.04■■■□□ 2.08
USP6NL-204ENST00000606752 FANCIQ9NVI1 1328 aa28.03■■■□□ 2.08
USP6NL-204ENST00000606752 LTBP4Q8N2S1 1624 aa28.03■■■□□ 2.08
USP6NL-204ENST00000606752 CABLES1Q8TDN4 633 aa28.02■■■□□ 2.08
USP6NL-204ENST00000606752 NBPF6Q5VWK0 638 aa28.01■■■□□ 2.07
USP6NL-204ENST00000606752 TSR2Q969E8 191 aaKnown RBP28.01■■■□□ 2.07
USP6NL-204ENST00000606752 NBPF4Q96M43 638 aa28.01■■■□□ 2.07
USP6NL-204ENST00000606752 PPP4R2Q9NY27 417 aa28■■■□□ 2.07
USP6NL-204ENST00000606752 AXIN2Q9Y2T1 843 aa28■■■□□ 2.07
USP6NL-204ENST00000606752 MTHFSDQ2M296 383 aaKnown RBP27.99■■■□□ 2.07
USP6NL-204ENST00000606752 GAS2L2Q8NHY3 880 aa27.99■■■□□ 2.07
USP6NL-204ENST00000606752 THUMPD2Q9BTF0 503 aaKnown RBP27.99■■■□□ 2.07
USP6NL-204ENST00000606752 PLIN1O60240 522 aa27.99■■■□□ 2.07
USP6NL-204ENST00000606752 CT47B1P0C2W7 299 aaPredicted RBP27.99■■■□□ 2.07
USP6NL-204ENST00000606752 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.99■■■□□ 2.07
USP6NL-204ENST00000606752 ANKRD24Q8TF21 1146 aa27.99■■■□□ 2.07
USP6NL-204ENST00000606752 IFT57Q9NWB7 429 aa27.98■■■□□ 2.07
USP6NL-204ENST00000606752 FAM83GA6ND36 823 aa27.97■■■□□ 2.07
USP6NL-204ENST00000606752 GNAI1P63096 354 aa27.97■■■□□ 2.07
USP6NL-204ENST00000606752 USHBP1Q8N6Y0 703 aa27.97■■■□□ 2.07
USP6NL-204ENST00000606752 DLG5Q8TDM6 1919 aa27.96■■■□□ 2.07
USP6NL-204ENST00000606752 BCAR3O75815 825 aa27.95■■■□□ 2.07
USP6NL-204ENST00000606752 ZNF853P0CG23 659 aa27.95■■■□□ 2.07
USP6NL-204ENST00000606752 EXOSC9Q06265 439 aaKnown RBP27.95■■■□□ 2.07
USP6NL-204ENST00000606752 LRRC59Q96AG4 307 aaKnown RBP27.95■■■□□ 2.07
USP6NL-204ENST00000606752 CPDO75976 1380 aa27.95■■■□□ 2.06
USP6NL-204ENST00000606752 RARSP54136 660 aaKnown RBP27.95■■■□□ 2.06
USP6NL-204ENST00000606752 DCTN1Q14203 1278 aa27.95■■■□□ 2.06
USP6NL-204ENST00000606752 LAS1LQ9Y4W2 734 aaKnown RBP27.95■■■□□ 2.06
USP6NL-204ENST00000606752 CFAP44Q96MT7 982 aa27.94■■■□□ 2.06
USP6NL-204ENST00000606752 NHSL1Q5SYE7 1610 aa27.93■■■□□ 2.06
USP6NL-204ENST00000606752 ERBB3P21860 1342 aa27.93■■■□□ 2.06
USP6NL-204ENST00000606752 HTATSF1O43719 755 aaKnown RBP27.92■■■□□ 2.06
USP6NL-204ENST00000606752 RTF1Q92541 710 aaKnown RBP27.91■■■□□ 2.06
USP6NL-204ENST00000606752 CRYBG1Q9Y4K1 1723 aa27.91■■■□□ 2.06
USP6NL-204ENST00000606752 NCAPD2Q15021 1401 aa27.9■■■□□ 2.06
USP6NL-204ENST00000606752 MCM10Q7L590 875 aa27.9■■■□□ 2.06
USP6NL-204ENST00000606752 KIAA0232Q92628 1395 aa27.9■■■□□ 2.06
USP6NL-204ENST00000606752 ABCC6O95255 1503 aa27.89■■■□□ 2.06
USP6NL-204ENST00000606752 MBIPQ9NS73 344 aa27.88■■■□□ 2.05
USP6NL-204ENST00000606752 GNAT3A8MTJ3 354 aa27.88■■■□□ 2.05
USP6NL-204ENST00000606752 CHRNA2Q15822 529 aa27.88■■■□□ 2.05
USP6NL-204ENST00000606752 EXOC6Q8TAG9 804 aa27.87■■■□□ 2.05
USP6NL-204ENST00000606752 COL18A1P39060 1754 aa27.86■■■□□ 2.05
USP6NL-204ENST00000606752 HAP1P54257 671 aaPredicted RBP27.86■■■□□ 2.05
USP6NL-204ENST00000606752 C20orf194Q5TEA3 1177 aa27.85■■■□□ 2.05
USP6NL-204ENST00000606752 CHL1O00533 1208 aa27.84■■■□□ 2.05
USP6NL-204ENST00000606752 RGPD2P0DJD1 1756 aa27.84■■■□□ 2.05
USP6NL-204ENST00000606752 CRB1P82279 1406 aa27.84■■■□□ 2.05
USP6NL-204ENST00000606752 AMOTQ4VCS5 1084 aa27.83■■■□□ 2.05
USP6NL-204ENST00000606752 PLEKHO1Q53GL0 409 aaPredicted RBP27.83■■■□□ 2.05
USP6NL-204ENST00000606752 ZNF428Q96B54 188 aa27.83■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 139.9 ms