RNA–Protein interactions for RNA: ENST00000582594.5

PPP4R1-222, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 1 (best)

Gene PPP4R1, Length 2,982 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-222	ENST00000582594	HMOX1	P09601	288 aa		11.85	□□□□□ -0.51
PPP4R1-222	ENST00000582594	GSPT1	P15170	499 aa	Known RBP	11.85	□□□□□ -0.51
PPP4R1-222	ENST00000582594	RBM27	Q9P2N5	1060 aa	Known RBP	11.85	□□□□□ -0.51
PPP4R1-222	ENST00000582594	COL3A1	P02461	1466 aa	Predicted RBP	11.84	□□□□□ -0.51
PPP4R1-222	ENST00000582594	R3HCC1	Q9Y3T6	440 aa	Known RBP	11.84	□□□□□ -0.51
PPP4R1-222	ENST00000582594	CALD1	Q05682	793 aa	Known RBP	11.84	□□□□□ -0.51
PPP4R1-222	ENST00000582594	C16orf71	Q8IYS4	520 aa	Predicted RBP	11.84	□□□□□ -0.51
PPP4R1-222	ENST00000582594	MRPL50	Q8N5N7	158 aa	Known RBP	11.84	□□□□□ -0.51
PPP4R1-222	ENST00000582594	APBB1	O00213	710 aa		11.83	□□□□□ -0.52
PPP4R1-222	ENST00000582594	FOXD4L5	Q5VV16	416 aa	Predicted RBP	11.83	□□□□□ -0.52
PPP4R1-222	ENST00000582594	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	11.83	□□□□□ -0.52
PPP4R1-222	ENST00000582594	RBSN	Q9H1K0	784 aa		11.83	□□□□□ -0.52
PPP4R1-222	ENST00000582594	VAMP4	O75379	141 aa		11.83	□□□□□ -0.52
PPP4R1-222	ENST00000582594	ZSCAN23	Q3MJ62	389 aa		11.83	□□□□□ -0.52
PPP4R1-222	ENST00000582594	ARID3A	Q99856	593 aa		11.83	□□□□□ -0.52
PPP4R1-222	ENST00000582594	OFD1	O75665	1012 aa		11.82	□□□□□ -0.52
PPP4R1-222	ENST00000582594	PHACTR3	Q96KR7	559 aa		11.82	□□□□□ -0.52
PPP4R1-222	ENST00000582594	NPAT	Q14207	1427 aa		11.82	□□□□□ -0.52
PPP4R1-222	ENST00000582594	PRPF40A	O75400	957 aa	Known RBP	11.82	□□□□□ -0.52
PPP4R1-222	ENST00000582594	XPC	Q01831	940 aa	Predicted RBP	11.82	□□□□□ -0.52
PPP4R1-222	ENST00000582594	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	11.82	□□□□□ -0.52
PPP4R1-222	ENST00000582594	ZGPAT	Q8N5A5	531 aa	Known RBP	11.82	□□□□□ -0.52
PPP4R1-222	ENST00000582594	LMBRD1	Q9NUN5	540 aa		11.82	□□□□□ -0.52
PPP4R1-222	ENST00000582594	ARHGEF28	Q8N1W1	1705 aa	Known RBP	11.81	□□□□□ -0.52
PPP4R1-222	ENST00000582594	PRIM1	P49642	420 aa	Known RBP	11.81	□□□□□ -0.52
PPP4R1-222	ENST00000582594	PLEKHM2	Q8IWE5	1019 aa		11.81	□□□□□ -0.52
PPP4R1-222	ENST00000582594	OTUD7A	Q8TE49	926 aa	Predicted RBP	11.81	□□□□□ -0.52
PPP4R1-222	ENST00000582594	PDCL3	Q9H2J4	239 aa		11.81	□□□□□ -0.52
PPP4R1-222	ENST00000582594	FAM13B	Q9NYF5	915 aa		11.81	□□□□□ -0.52
PPP4R1-222	ENST00000582594	MED14	O60244	1454 aa		11.81	□□□□□ -0.52
PPP4R1-222	ENST00000582594	NEO1	Q92859	1461 aa		11.81	□□□□□ -0.52
PPP4R1-222	ENST00000582594	ZBTB7C	A1YPR0	619 aa		11.8	□□□□□ -0.52
PPP4R1-222	ENST00000582594	RABEP1	Q15276	862 aa		11.8	□□□□□ -0.52
PPP4R1-222	ENST00000582594	CAMSAP1	Q5T5Y3	1602 aa		11.8	□□□□□ -0.52
PPP4R1-222	ENST00000582594	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	11.8	□□□□□ -0.52
PPP4R1-222	ENST00000582594	ZNF445	P59923	1031 aa		11.79	□□□□□ -0.52
PPP4R1-222	ENST00000582594	CLEC17A	Q6ZS10	378 aa		11.79	□□□□□ -0.52
PPP4R1-222	ENST00000582594	TERF2IP	Q9NYB0	399 aa		11.79	□□□□□ -0.52
PPP4R1-222	ENST00000582594	LRRC7	Q96NW7	1537 aa		11.79	□□□□□ -0.52
PPP4R1-222	ENST00000582594	SMARCA5	O60264	1052 aa	Predicted RBP	11.79	□□□□□ -0.52
PPP4R1-222	ENST00000582594	NUCB2	P80303	420 aa		11.79	□□□□□ -0.52
PPP4R1-222	ENST00000582594	GPT2	Q8TD30	523 aa		11.79	□□□□□ -0.52
PPP4R1-222	ENST00000582594	MBIP	Q9NS73	344 aa		11.79	□□□□□ -0.52
PPP4R1-222	ENST00000582594	FCHSD2	O94868	740 aa		11.79	□□□□□ -0.52
PPP4R1-222	ENST00000582594	KIDINS220	Q9ULH0	1771 aa		11.78	□□□□□ -0.52
PPP4R1-222	ENST00000582594	VGF	O15240	615 aa	Predicted RBP	11.78	□□□□□ -0.52
PPP4R1-222	ENST00000582594	TWISTNB	Q3B726	338 aa	Predicted RBP	11.78	□□□□□ -0.52
PPP4R1-222	ENST00000582594	C8orf58	Q8NAV2	365 aa		11.78	□□□□□ -0.52
PPP4R1-222	ENST00000582594	PUS7	Q96PZ0	661 aa	Known RBP	11.78	□□□□□ -0.52
PPP4R1-222	ENST00000582594	PRAM1	Q96QH2	718 aa		11.78	□□□□□ -0.52
PPP4R1-222	ENST00000582594	USP26	Q9BXU7	913 aa		11.78	□□□□□ -0.52
PPP4R1-222	ENST00000582594	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.78	□□□□□ -0.52
PPP4R1-222	ENST00000582594	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.78	□□□□□ -0.52
PPP4R1-222	ENST00000582594	RPGRIP1L	Q68CZ1	1315 aa		11.78	□□□□□ -0.52
PPP4R1-222	ENST00000582594	TTC22	Q5TAA0	569 aa		11.78	□□□□□ -0.52
PPP4R1-222	ENST00000582594	CHMP4B	Q9H444	224 aa	Known RBP	11.78	□□□□□ -0.52
PPP4R1-222	ENST00000582594	NSFL1C	Q9UNZ2	370 aa	Known RBP	11.78	□□□□□ -0.52
PPP4R1-222	ENST00000582594	SYCE3	A1L190	88 aa		11.77	□□□□□ -0.52
PPP4R1-222	ENST00000582594	NFE2L2	Q16236	605 aa		11.77	□□□□□ -0.52
PPP4R1-222	ENST00000582594	RNF214	Q8ND24	703 aa		11.77	□□□□□ -0.52
PPP4R1-222	ENST00000582594	CABP1	Q9NZU7	370 aa		11.77	□□□□□ -0.52
PPP4R1-222	ENST00000582594	ABCC4	O15439	1325 aa		11.77	□□□□□ -0.53
PPP4R1-222	ENST00000582594	FAM83G	A6ND36	823 aa		11.77	□□□□□ -0.53
PPP4R1-222	ENST00000582594	CYP2E1	P05181	493 aa	Predicted RBP	11.77	□□□□□ -0.53
PPP4R1-222	ENST00000582594	DCTN1	Q14203	1278 aa		11.77	□□□□□ -0.53
PPP4R1-222	ENST00000582594	PTCH1	Q13635	1447 aa		11.77	□□□□□ -0.53
PPP4R1-222	ENST00000582594	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.76	□□□□□ -0.53
PPP4R1-222	ENST00000582594	ARHGAP45	Q92619	1136 aa		11.76	□□□□□ -0.53
PPP4R1-222	ENST00000582594	ZDHHC9	Q9Y397	364 aa		11.76	□□□□□ -0.53
PPP4R1-222	ENST00000582594	UQCRHL	A0A096LP55	91 aa		11.76	□□□□□ -0.53
PPP4R1-222	ENST00000582594	UQCRH	P07919	91 aa		11.76	□□□□□ -0.53
PPP4R1-222	ENST00000582594	BRPF1	P55201	1214 aa	Predicted RBP	11.76	□□□□□ -0.53
PPP4R1-222	ENST00000582594	TMEM63C	Q9P1W3	806 aa		11.76	□□□□□ -0.53
PPP4R1-222	ENST00000582594	NOL7	Q9UMY1	257 aa	Known RBP	11.76	□□□□□ -0.53
PPP4R1-222	ENST00000582594	LMTK2	Q8IWU2	1503 aa		11.76	□□□□□ -0.53
PPP4R1-222	ENST00000582594	SDS	P20132	328 aa		11.76	□□□□□ -0.53
PPP4R1-222	ENST00000582594	GNAI1	P63096	354 aa		11.76	□□□□□ -0.53
PPP4R1-222	ENST00000582594	INTS3	Q68E01	1043 aa	Known RBP	11.76	□□□□□ -0.53
PPP4R1-222	ENST00000582594	POLK	Q9UBT6	870 aa		11.76	□□□□□ -0.53
PPP4R1-222	ENST00000582594	NOL8	Q76FK4	1167 aa	Known RBP	11.75	□□□□□ -0.53
PPP4R1-222	ENST00000582594	ZNF428	Q96B54	188 aa		11.75	□□□□□ -0.53
PPP4R1-222	ENST00000582594	EMILIN1	Q9Y6C2	1016 aa		11.75	□□□□□ -0.53
PPP4R1-222	ENST00000582594	PIK3R4	Q99570	1358 aa		11.75	□□□□□ -0.53
PPP4R1-222	ENST00000582594	FAM135B	Q49AJ0	1406 aa		11.75	□□□□□ -0.53
PPP4R1-222	ENST00000582594	CD163L1	Q9NR16	1453 aa		11.75	□□□□□ -0.53
PPP4R1-222	ENST00000582594	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	11.75	□□□□□ -0.53
PPP4R1-222	ENST00000582594	FOXD4L3	Q6VB84	417 aa	Predicted RBP	11.75	□□□□□ -0.53
PPP4R1-222	ENST00000582594	DCTPP1	Q9H773	170 aa		11.75	□□□□□ -0.53
PPP4R1-222	ENST00000582594	KNDC1	Q76NI1	1749 aa		11.75	□□□□□ -0.53
PPP4R1-222	ENST00000582594	MPND	Q8N594	471 aa		11.74	□□□□□ -0.53
PPP4R1-222	ENST00000582594	CDK19	Q9BWU1	502 aa		11.74	□□□□□ -0.53
PPP4R1-222	ENST00000582594	RICTOR	Q6R327	1708 aa		11.74	□□□□□ -0.53
PPP4R1-222	ENST00000582594	PNPLA6	Q8IY17	1366 aa		11.74	□□□□□ -0.53
PPP4R1-222	ENST00000582594	ST18	O60284	1047 aa		11.74	□□□□□ -0.53
PPP4R1-222	ENST00000582594	KRT24	Q2M2I5	525 aa		11.74	□□□□□ -0.53
PPP4R1-222	ENST00000582594	PDLIM2	Q96JY6	352 aa		11.74	□□□□□ -0.53
PPP4R1-222	ENST00000582594	API5	Q9BZZ5	524 aa	Known RBP	11.74	□□□□□ -0.53
PPP4R1-222	ENST00000582594	ASXL2	Q76L83	1435 aa		11.74	□□□□□ -0.53
PPP4R1-222	ENST00000582594	ADAMTSL3	P82987	1691 aa		11.74	□□□□□ -0.53
PPP4R1-222	ENST00000582594	TPRN	Q4KMQ1	711 aa		11.73	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms