RNA–Protein interactions for RNA: ENST00000575663.5

SMG6-219, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 574 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-219ENST00000575663 GCP02774 474 aa8.7□□□□□ -1.02
SMG6-219ENST00000575663 PELP1Q8IZL8 1130 aaKnown RBP8.7□□□□□ -1.02
SMG6-219ENST00000575663 PROM2Q8N271 834 aa8.7□□□□□ -1.02
SMG6-219ENST00000575663 ACEP12821 1306 aa8.7□□□□□ -1.02
SMG6-219ENST00000575663 POLD1P28340 1107 aa8.69□□□□□ -1.02
SMG6-219ENST00000575663 KLHL34Q8N239 644 aa8.69□□□□□ -1.02
SMG6-219ENST00000575663 CCDC61Q9Y6R9 512 aa8.69□□□□□ -1.02
SMG6-219ENST00000575663 CHD4Q14839 1912 aa8.69□□□□□ -1.02
SMG6-219ENST00000575663 BRD4O60885 1362 aaPredicted RBP8.69□□□□□ -1.02
SMG6-219ENST00000575663 PTF1AQ7RTS3 328 aa8.68□□□□□ -1.02
SMG6-219ENST00000575663 MARCH10Q8NA82 808 aaPredicted RBP8.68□□□□□ -1.02
SMG6-219ENST00000575663 WDR17Q8IZU2 1322 aa8.68□□□□□ -1.02
SMG6-219ENST00000575663 CEP350Q5VT06 3117 aa8.68□□□□□ -1.02
SMG6-219ENST00000575663 TOPAZ1Q8N9V7 1692 aa8.68□□□□□ -1.02
SMG6-219ENST00000575663 PLEKHG3A1L390 1219 aa8.67□□□□□ -1.02
SMG6-219ENST00000575663 CDK19Q9BWU1 502 aa8.67□□□□□ -1.02
SMG6-219ENST00000575663 SHANK3Q9BYB0 1731 aa8.66□□□□□ -1.02
SMG6-219ENST00000575663 TNS2Q63HR2 1409 aa8.66□□□□□ -1.02
SMG6-219ENST00000575663 GRIN3BO60391 1043 aa8.66□□□□□ -1.02
SMG6-219ENST00000575663 STAC3Q96MF2 364 aa8.66□□□□□ -1.02
SMG6-219ENST00000575663 SBF2Q86WG5 1849 aa8.66□□□□□ -1.02
SMG6-219ENST00000575663 SLIT3O75094 1523 aa8.65□□□□□ -1.02
SMG6-219ENST00000575663 CPSF1Q10570 1443 aaKnown RBP8.65□□□□□ -1.02
SMG6-219ENST00000575663 EXOC5O00471 708 aa8.65□□□□□ -1.02
SMG6-219ENST00000575663 CSB-PGBD3P0DP91 1061 aa8.65□□□□□ -1.02
SMG6-219ENST00000575663 HSPA6P17066 643 aa8.65□□□□□ -1.02
SMG6-219ENST00000575663 SLC16A10Q8TF71 515 aa8.65□□□□□ -1.02
SMG6-219ENST00000575663 AKAP12Q02952 1782 aa8.65□□□□□ -1.02
SMG6-219ENST00000575663 ARHGEF28Q8N1W1 1705 aaKnown RBP8.65□□□□□ -1.03
SMG6-219ENST00000575663 PAPPAQ13219 1627 aa8.65□□□□□ -1.03
SMG6-219ENST00000575663 PPIP5K1Q6PFW1 1433 aa8.64□□□□□ -1.03
SMG6-219ENST00000575663 ATP10DQ9P241 1426 aa8.64□□□□□ -1.03
SMG6-219ENST00000575663 GOLGB1Q14789 3259 aaKnown RBP8.64□□□□□ -1.03
SMG6-219ENST00000575663 CCDC7Q96M83 1385 aa8.64□□□□□ -1.03
SMG6-219ENST00000575663 WNK3Q9BYP7 1800 aa8.64□□□□□ -1.03
SMG6-219ENST00000575663 NLRP6P59044 892 aa8.64□□□□□ -1.03
SMG6-219ENST00000575663 SRPK2P78362 688 aaKnown RBP8.64□□□□□ -1.03
SMG6-219ENST00000575663 DCAF11Q8TEB1 546 aa8.64□□□□□ -1.03
SMG6-219ENST00000575663 CARD10Q9BWT7 1032 aa8.64□□□□□ -1.03
SMG6-219ENST00000575663 GPBP1L1Q9HC44 474 aaPredicted RBP8.64□□□□□ -1.03
SMG6-219ENST00000575663 NHSQ6T4R5 1651 aa8.63□□□□□ -1.03
SMG6-219ENST00000575663 ZNF827Q17R98 1081 aa8.63□□□□□ -1.03
SMG6-219ENST00000575663 KDM2AQ9Y2K7 1162 aa8.63□□□□□ -1.03
SMG6-219ENST00000575663 ABCC6O95255 1503 aa8.63□□□□□ -1.03
SMG6-219ENST00000575663 USP6P35125 1406 aa8.63□□□□□ -1.03
SMG6-219ENST00000575663 KCNH5Q8NCM2 988 aa8.62□□□□□ -1.03
SMG6-219ENST00000575663 NLGN2Q8NFZ4 835 aa8.62□□□□□ -1.03
SMG6-219ENST00000575663 ACSBG1Q96GR2 724 aa8.62□□□□□ -1.03
SMG6-219ENST00000575663 SLC27A3Q5K4L6 730 aa8.61□□□□□ -1.03
SMG6-219ENST00000575663 TRPM1Q7Z4N2 1603 aa8.61□□□□□ -1.03
SMG6-219ENST00000575663 PNPLA7Q6ZV29 1317 aa8.6□□□□□ -1.03
SMG6-219ENST00000575663 YBX3P16989 372 aaKnown RBP eCLIP8.6□□□□□ -1.03
SMG6-219ENST00000575663 ARHGEF25Q86VW2 580 aa8.6□□□□□ -1.03
SMG6-219ENST00000575663 TFCP2L1Q9NZI6 479 aa8.6□□□□□ -1.03
SMG6-219ENST00000575663 AXIN2Q9Y2T1 843 aa8.6□□□□□ -1.03
SMG6-219ENST00000575663 AKT1S1Q96B36 256 aa8.59□□□□□ -1.03
SMG6-219ENST00000575663 ADCY9O60503 1353 aa8.59□□□□□ -1.03
SMG6-219ENST00000575663 QRICH2Q9H0J4 1663 aa8.59□□□□□ -1.03
SMG6-219ENST00000575663 SOX12O15370 315 aa8.58□□□□□ -1.04
SMG6-219ENST00000575663 IL2RBP14784 551 aa8.58□□□□□ -1.04
SMG6-219ENST00000575663 ZNF526Q8TF50 670 aaPredicted RBP8.58□□□□□ -1.04
SMG6-219ENST00000575663 CABP2Q9NPB3 220 aa8.58□□□□□ -1.04
SMG6-219ENST00000575663 LRRC4BQ9NT99 713 aa8.58□□□□□ -1.04
SMG6-219ENST00000575663 COL18A1P39060 1754 aa8.58□□□□□ -1.04
SMG6-219ENST00000575663 CENPJQ9HC77 1338 aaPredicted RBP8.57□□□□□ -1.04
SMG6-219ENST00000575663 PIK3C2AO00443 1686 aa8.57□□□□□ -1.04
SMG6-219ENST00000575663 APLP1P51693 650 aa8.57□□□□□ -1.04
SMG6-219ENST00000575663 QSER1Q2KHR3 1735 aa8.57□□□□□ -1.04
SMG6-219ENST00000575663 ERBB3P21860 1342 aa8.56□□□□□ -1.04
SMG6-219ENST00000575663 TTC21AQ8NDW8 1320 aa8.56□□□□□ -1.04
SMG6-219ENST00000575663 MSH5O43196 834 aa8.56□□□□□ -1.04
SMG6-219ENST00000575663 CABP1Q9NZU7 370 aa8.56□□□□□ -1.04
SMG6-219ENST00000575663 BTAF1O14981 1849 aa8.55□□□□□ -1.04
SMG6-219ENST00000575663 NLRP2Q9NX02 1062 aa8.55□□□□□ -1.04
SMG6-219ENST00000575663 TTC21BQ7Z4L5 1316 aa8.54□□□□□ -1.04
SMG6-219ENST00000575663 NFAT5O94916 1531 aa8.54□□□□□ -1.04
SMG6-219ENST00000575663 COL24A1Q17RW2 1714 aa8.54□□□□□ -1.04
SMG6-219ENST00000575663 SYTL4Q96C24 671 aaPredicted RBP8.54□□□□□ -1.04
SMG6-219ENST00000575663 ZNF692Q9BU19 519 aaPredicted RBP8.54□□□□□ -1.04
SMG6-219ENST00000575663 CD2APQ9Y5K6 639 aa8.54□□□□□ -1.04
SMG6-219ENST00000575663 HMGB2P26583 209 aaKnown RBP8.53□□□□□ -1.04
SMG6-219ENST00000575663 CCNL1Q9UK58 526 aaPredicted RBP8.53□□□□□ -1.04
SMG6-219ENST00000575663 EVC2Q86UK5 1308 aa8.53□□□□□ -1.04
SMG6-219ENST00000575663 KIAA1210Q9ULL0 1709 aa8.52□□□□□ -1.05
SMG6-219ENST00000575663 ANKRD36BQ8N2N9 1353 aa8.52□□□□□ -1.05
SMG6-219ENST00000575663 RAB3GAP2Q9H2M9 1393 aa8.52□□□□□ -1.05
SMG6-219ENST00000575663 KIF3CO14782 793 aa8.52□□□□□ -1.05
SMG6-219ENST00000575663 MSL1Q68DK7 614 aa8.52□□□□□ -1.05
SMG6-219ENST00000575663 ANKRD24Q8TF21 1146 aa8.52□□□□□ -1.05
SMG6-219ENST00000575663 CAPN15O75808 1086 aa8.51□□□□□ -1.05
SMG6-219ENST00000575663 TOMM70O94826 608 aa8.51□□□□□ -1.05
SMG6-219ENST00000575663 FLAD1Q8NFF5 587 aa8.51□□□□□ -1.05
SMG6-219ENST00000575663 DDX54Q8TDD1 881 aaKnown RBP8.51□□□□□ -1.05
SMG6-219ENST00000575663 IGSF1Q8N6C5 1336 aa8.51□□□□□ -1.05
SMG6-219ENST00000575663 KTN1Q86UP2 1357 aaKnown RBP8.5□□□□□ -1.05
SMG6-219ENST00000575663 USP47Q96K76 1375 aa8.5□□□□□ -1.05
SMG6-219ENST00000575663 KCNQ4P56696 695 aa8.5□□□□□ -1.05
SMG6-219ENST00000575663 COL23A1Q86Y22 540 aaPredicted RBP8.5□□□□□ -1.05
SMG6-219ENST00000575663 TNS4Q8IZW8 715 aa8.5□□□□□ -1.05
SMG6-219ENST00000575663 PRIM1P49642 420 aaKnown RBP8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms