RNA–Protein interactions for RNA: ENST00000575663.5

SMG6-219, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 574 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-219ENST00000575663 NISCHQ9Y2I1 1504 aa15.17■□□□□ 0.02
SMG6-219ENST00000575663 ABCC9O60706 1549 aa14.1□□□□□ -0.15
SMG6-219ENST00000575663 CCDC180Q9P1Z9 1646 aa13.78□□□□□ -0.2
SMG6-219ENST00000575663 DNAJC5BQ9UF47 199 aa13.46□□□□□ -0.25
SMG6-219ENST00000575663 RB1CC1Q8TDY2 1594 aa13.31□□□□□ -0.28
SMG6-219ENST00000575663 NACADO15069 1562 aa13.12□□□□□ -0.31
SMG6-219ENST00000575663 PABPN1Q86U42 306 aaKnown RBP eCLIP13.06□□□□□ -0.32
SMG6-219ENST00000575663 DCAF8L2P0C7V8 631 aa12.95□□□□□ -0.34
SMG6-219ENST00000575663 UNC13AQ9UPW8 1703 aa12.87□□□□□ -0.35
SMG6-219ENST00000575663 BICRAQ9NZM4 1560 aa12.86□□□□□ -0.35
SMG6-219ENST00000575663 MYO15BQ96JP2 1530 aa12.85□□□□□ -0.35
SMG6-219ENST00000575663 SHROOM4Q9ULL8 1493 aa12.78□□□□□ -0.36
SMG6-219ENST00000575663 CECR2Q9BXF3 1484 aa12.77□□□□□ -0.37
SMG6-219ENST00000575663 CC2D2AQ9P2K1 1620 aa12.71□□□□□ -0.37
SMG6-219ENST00000575663 DNAJC5Q9H3Z4 198 aa12.68□□□□□ -0.38
SMG6-219ENST00000575663 EIF4G1Q04637 1599 aaKnown RBP12.63□□□□□ -0.39
SMG6-219ENST00000575663 DCAF1Q9Y4B6 1507 aa12.54□□□□□ -0.4
SMG6-219ENST00000575663 ZCCHC6Q5VYS8 1495 aaKnown RBP12.53□□□□□ -0.4
SMG6-219ENST00000575663 SCRIBQ14160 1630 aa12.52□□□□□ -0.4
SMG6-219ENST00000575663 CUX2O14529 1486 aa12.36□□□□□ -0.43
SMG6-219ENST00000575663 ERCC6Q03468 1493 aa12.27□□□□□ -0.44
SMG6-219ENST00000575663 NCAPD3P42695 1498 aa12.11□□□□□ -0.47
SMG6-219ENST00000575663 ATAD2BQ9ULI0 1458 aa12.02□□□□□ -0.49
SMG6-219ENST00000575663 HMGXB3Q12766 1538 aa12.01□□□□□ -0.49
SMG6-219ENST00000575663 TRIM41Q8WV44 630 aa12.01□□□□□ -0.49
SMG6-219ENST00000575663 SMARCA2P51531 1590 aa12□□□□□ -0.49
SMG6-219ENST00000575663 NESP48681 1621 aa11.99□□□□□ -0.49
SMG6-219ENST00000575663 THOC2Q8NI27 1593 aaKnown RBP11.97□□□□□ -0.49
SMG6-219ENST00000575663 BAZ1BQ9UIG0 1483 aaKnown RBP11.91□□□□□ -0.5
SMG6-219ENST00000575663 LAMC3Q9Y6N6 1575 aa11.91□□□□□ -0.5
SMG6-219ENST00000575663 SMARCA4P51532 1647 aa11.9□□□□□ -0.5
SMG6-219ENST00000575663 PDS5BQ9NTI5 1447 aa11.87□□□□□ -0.51
SMG6-219ENST00000575663 BAZ1AQ9NRL2 1556 aaPredicted RBP11.84□□□□□ -0.51
SMG6-219ENST00000575663 KIF21AQ7Z4S6 1674 aa11.81□□□□□ -0.52
SMG6-219ENST00000575663 PEG3Q9GZU2 1588 aa11.8□□□□□ -0.52
SMG6-219ENST00000575663 MRC2Q9UBG0 1479 aa11.78□□□□□ -0.52
SMG6-219ENST00000575663 WDR62O43379 1518 aa11.76□□□□□ -0.53
SMG6-219ENST00000575663 CADPSQ9ULU8 1353 aa11.73□□□□□ -0.53
SMG6-219ENST00000575663 OSCARQ8IYS5 282 aa11.7□□□□□ -0.54
SMG6-219ENST00000575663 CEP164Q9UPV0 1460 aa11.68□□□□□ -0.54
SMG6-219ENST00000575663 MROH2BQ7Z745 1585 aa11.67□□□□□ -0.54
SMG6-219ENST00000575663 FANCD2Q9BXW9 1451 aa11.6□□□□□ -0.55
SMG6-219ENST00000575663 RIMBP3CA6NJZ7 1639 aa11.56□□□□□ -0.56
SMG6-219ENST00000575663 RIMBP3BA6NNM3 1639 aa11.56□□□□□ -0.56
SMG6-219ENST00000575663 RIMBP3Q9UFD9 1639 aa11.56□□□□□ -0.56
SMG6-219ENST00000575663 CFTRP13569 1480 aa11.52□□□□□ -0.56
SMG6-219ENST00000575663 ARHGEF11O15085 1522 aa11.52□□□□□ -0.57
SMG6-219ENST00000575663 URB2Q14146 1524 aaKnown RBP11.5□□□□□ -0.57
SMG6-219ENST00000575663 WIZO95785 1651 aa11.48□□□□□ -0.57
SMG6-219ENST00000575663 TRHP20396 242 aaPredicted RBP11.46□□□□□ -0.57
SMG6-219ENST00000575663 IFT140Q96RY7 1462 aa11.45□□□□□ -0.58
SMG6-219ENST00000575663 CYB5RLQ6IPT4 315 aa11.43□□□□□ -0.58
SMG6-219ENST00000575663 ZNF608Q9ULD9 1512 aaPredicted RBP11.41□□□□□ -0.58
SMG6-219ENST00000575663 AEBP2Q6ZN18 517 aaPredicted RBP11.41□□□□□ -0.58
SMG6-219ENST00000575663 TOP2AP11388 1531 aaKnown RBP11.38□□□□□ -0.59
SMG6-219ENST00000575663 ARAP1Q96P48 1450 aa11.38□□□□□ -0.59
SMG6-219ENST00000575663 RSF1Q96T23 1441 aaPredicted RBP11.36□□□□□ -0.59
SMG6-219ENST00000575663 EIF4G3O43432 1585 aaKnown RBP11.36□□□□□ -0.59
SMG6-219ENST00000575663 TOPBP1Q92547 1522 aa11.33□□□□□ -0.6
SMG6-219ENST00000575663 ABCC8Q09428 1581 aa11.32□□□□□ -0.6
SMG6-219ENST00000575663 PRDM2Q13029 1718 aa11.32□□□□□ -0.6
SMG6-219ENST00000575663 FBLN2P98095 1184 aa11.29□□□□□ -0.6
SMG6-219ENST00000575663 CHD1O14646 1710 aa11.28□□□□□ -0.6
SMG6-219ENST00000575663 DNMBPQ6XZF7 1577 aa11.28□□□□□ -0.6
SMG6-219ENST00000575663 AQRO60306 1485 aaKnown RBP eCLIP11.26□□□□□ -0.611e-6■■■■□ 23.5
SMG6-219ENST00000575663 TARBP1Q13395 1621 aaKnown RBP11.22□□□□□ -0.61
SMG6-219ENST00000575663 CCDC88BA6NC98 1476 aa11.21□□□□□ -0.61
SMG6-219ENST00000575663 POLA1P09884 1462 aaPredicted RBP11.2□□□□□ -0.62
SMG6-219ENST00000575663 SYNJ1O43426 1573 aa11.2□□□□□ -0.62
SMG6-219ENST00000575663 CLASP1Q7Z460 1538 aa11.19□□□□□ -0.62
SMG6-219ENST00000575663 SNAPC4Q5SXM2 1469 aa11.19□□□□□ -0.62
SMG6-219ENST00000575663 CHMP7Q8WUX9 453 aaPredicted RBP11.17□□□□□ -0.62
SMG6-219ENST00000575663 WDR97A6NE52 1622 aa11.17□□□□□ -0.62
SMG6-219ENST00000575663 MAGI1Q96QZ7 1491 aaPredicted RBP11.15□□□□□ -0.62
SMG6-219ENST00000575663 TDRD9Q8NDG6 1382 aaKnown RBP11.15□□□□□ -0.63
SMG6-219ENST00000575663 SOGA1O94964 1423 aa11.14□□□□□ -0.63
SMG6-219ENST00000575663 RAD54L2Q9Y4B4 1467 aa11.13□□□□□ -0.63
SMG6-219ENST00000575663 GAPVD1Q14C86 1478 aa11.12□□□□□ -0.63
SMG6-219ENST00000575663 SYNJ2O15056 1496 aa11.12□□□□□ -0.63
SMG6-219ENST00000575663 GRIN2BQ13224 1484 aa11.11□□□□□ -0.63
SMG6-219ENST00000575663 FGD5Q6ZNL6 1462 aa11.07□□□□□ -0.64
SMG6-219ENST00000575663 CUX1P39880 1505 aa10.99□□□□□ -0.65
SMG6-219ENST00000575663 PBRM1Q86U86 1689 aa10.98□□□□□ -0.65
SMG6-219ENST00000575663 ERCC6L2Q5T890 1561 aa10.95□□□□□ -0.66
SMG6-219ENST00000575663 GRIN2AQ12879 1464 aa10.95□□□□□ -0.66
SMG6-219ENST00000575663 CEP170Q5SW79 1584 aa10.94□□□□□ -0.66
SMG6-219ENST00000575663 ABCA10Q8WWZ4 1543 aa10.94□□□□□ -0.66
SMG6-219ENST00000575663 ABCA5Q8WWZ7 1642 aa10.94□□□□□ -0.66
SMG6-219ENST00000575663 NUP160Q12769 1436 aa10.92□□□□□ -0.66
SMG6-219ENST00000575663 ADAMTS12P58397 1594 aa10.9□□□□□ -0.66
SMG6-219ENST00000575663 SHROOM2Q13796 1616 aa10.89□□□□□ -0.67
SMG6-219ENST00000575663 ILDR1Q86SU0 546 aaPredicted RBP10.89□□□□□ -0.67
SMG6-219ENST00000575663 KIF13AQ9H1H9 1805 aa10.88□□□□□ -0.67
SMG6-219ENST00000575663 ABCC10Q5T3U5 1492 aa10.87□□□□□ -0.67
SMG6-219ENST00000575663 FAM69CQ0P6D2 419 aa10.87□□□□□ -0.67
SMG6-219ENST00000575663 FHAD1B1AJZ9 1412 aa10.86□□□□□ -0.67
SMG6-219ENST00000575663 NPM1P06748 294 aaKnown RBP eCLIP10.86□□□□□ -0.67
SMG6-219ENST00000575663 WRNQ14191 1432 aaPredicted RBP eCLIP10.84□□□□□ -0.67
SMG6-219ENST00000575663 PRG4Q92954 1404 aaPredicted RBP10.84□□□□□ -0.67
SMG6-219ENST00000575663 MAPKBP1O60336 1514 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms