RNA–Protein interactions for RNA: ENST00000571457.1

CHMP6-202, Transcript of charged multivesicular body protein 6, humanhuman

TSL 3

Gene CHMP6, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP6-202ENST00000571457 PROM2Q8N271 834 aa16.51■□□□□ 0.23
CHMP6-202ENST00000571457 PDGFDQ9GZP0 370 aaPredicted RBP16.51■□□□□ 0.23
CHMP6-202ENST00000571457 ATF5Q9Y2D1 282 aaPredicted RBP16.51■□□□□ 0.23
CHMP6-202ENST00000571457 WDR17Q8IZU2 1322 aa16.5■□□□□ 0.23
CHMP6-202ENST00000571457 SYT17Q9BSW7 474 aa16.5■□□□□ 0.23
CHMP6-202ENST00000571457 SLC15A2Q16348 729 aa16.49■□□□□ 0.23
CHMP6-202ENST00000571457 PTF1AQ7RTS3 328 aa16.49■□□□□ 0.23
CHMP6-202ENST00000571457 MARCH10Q8NA82 808 aaPredicted RBP16.49■□□□□ 0.23
CHMP6-202ENST00000571457 FHDC1Q9C0D6 1143 aaPredicted RBP16.49■□□□□ 0.23
CHMP6-202ENST00000571457 MTFR1LQ9H019 292 aa16.49■□□□□ 0.23
CHMP6-202ENST00000571457 MYOM1P52179 1685 aa16.49■□□□□ 0.23
CHMP6-202ENST00000571457 TXNRD1Q16881 649 aa16.48■□□□□ 0.23
CHMP6-202ENST00000571457 KIAA1210Q9ULL0 1709 aa16.48■□□□□ 0.23
CHMP6-202ENST00000571457 CHD4Q14839 1912 aa16.47■□□□□ 0.23
CHMP6-202ENST00000571457 USP6P35125 1406 aa16.47■□□□□ 0.23
CHMP6-202ENST00000571457 SLIT3O75094 1523 aa16.47■□□□□ 0.23
CHMP6-202ENST00000571457 SENP3-EIF4A1A0A087X0R7 540 aa16.47■□□□□ 0.23
CHMP6-202ENST00000571457 CENPJQ9HC77 1338 aaPredicted RBP16.46■□□□□ 0.23
CHMP6-202ENST00000571457 AKAP12Q02952 1782 aa16.46■□□□□ 0.23
CHMP6-202ENST00000571457 CARD10Q9BWT7 1032 aa16.46■□□□□ 0.23
CHMP6-202ENST00000571457 CABP2Q9NPB3 220 aa16.46■□□□□ 0.23
CHMP6-202ENST00000571457 EXOC5O00471 708 aa16.45■□□□□ 0.22
CHMP6-202ENST00000571457 C1QTNF8P60827 252 aa16.45■□□□□ 0.22
CHMP6-202ENST00000571457 KCNH5Q8NCM2 988 aa16.45■□□□□ 0.22
CHMP6-202ENST00000571457 CABP1Q9NZU7 370 aa16.45■□□□□ 0.22
CHMP6-202ENST00000571457 CSB-PGBD3P0DP91 1061 aa16.44■□□□□ 0.22
CHMP6-202ENST00000571457 AXIN2Q9Y2T1 843 aa16.44■□□□□ 0.22
CHMP6-202ENST00000571457 WNK3Q9BYP7 1800 aa16.44■□□□□ 0.22
CHMP6-202ENST00000571457 CPSF1Q10570 1443 aaKnown RBP16.44■□□□□ 0.22
CHMP6-202ENST00000571457 COL18A1P39060 1754 aa16.43■□□□□ 0.22
CHMP6-202ENST00000571457 ARXQ96QS3 562 aa16.43■□□□□ 0.22
CHMP6-202ENST00000571457 SGIP1Q9BQI5 828 aa16.43■□□□□ 0.22
CHMP6-202ENST00000571457 NBPF1Q3BBV0 1214 aa16.42■□□□□ 0.22
CHMP6-202ENST00000571457 ARHGEF25Q86VW2 580 aa16.42■□□□□ 0.22
CHMP6-202ENST00000571457 CCDC7Q96M83 1385 aa16.41■□□□□ 0.22
CHMP6-202ENST00000571457 MAP3K5Q99683 1374 aa16.41■□□□□ 0.22
CHMP6-202ENST00000571457 ZNF692Q9BU19 519 aaPredicted RBP16.4■□□□□ 0.22
CHMP6-202ENST00000571457 PIK3C2AO00443 1686 aa16.39■□□□□ 0.21
CHMP6-202ENST00000571457 QRICH2Q9H0J4 1663 aa16.39■□□□□ 0.21
CHMP6-202ENST00000571457 TNS2Q63HR2 1409 aa16.38■□□□□ 0.21
CHMP6-202ENST00000571457 GPR162Q16538 588 aa16.38■□□□□ 0.21
CHMP6-202ENST00000571457 EVC2Q86UK5 1308 aa16.37■□□□□ 0.21
CHMP6-202ENST00000571457 TTC21AQ8NDW8 1320 aa16.37■□□□□ 0.21
CHMP6-202ENST00000571457 SOX12O15370 315 aa16.36■□□□□ 0.21
CHMP6-202ENST00000571457 GIGYF1O75420 1035 aaPredicted RBP16.36■□□□□ 0.21
CHMP6-202ENST00000571457 TTC21BQ7Z4L5 1316 aa16.36■□□□□ 0.21
CHMP6-202ENST00000571457 ABCC6O95255 1503 aa16.35■□□□□ 0.21
CHMP6-202ENST00000571457 TRPM1Q7Z4N2 1603 aa16.35■□□□□ 0.21
CHMP6-202ENST00000571457 NHSQ6T4R5 1651 aa16.35■□□□□ 0.21
CHMP6-202ENST00000571457 RGPD5Q99666 1765 aa16.35■□□□□ 0.21
CHMP6-202ENST00000571457 CEP350Q5VT06 3117 aa16.35■□□□□ 0.21
CHMP6-202ENST00000571457 IFFO2Q5TF58 517 aa16.34■□□□□ 0.21
CHMP6-202ENST00000571457 SLC16A10Q8TF71 515 aa16.34■□□□□ 0.21
CHMP6-202ENST00000571457 ACSBG1Q96GR2 724 aa16.34■□□□□ 0.21
CHMP6-202ENST00000571457 KAT6BQ8WYB5 2073 aa16.34■□□□□ 0.21
CHMP6-202ENST00000571457 POLD1P28340 1107 aa16.33■□□□□ 0.2
CHMP6-202ENST00000571457 GOLGB1Q14789 3259 aaKnown RBP16.33■□□□□ 0.2
CHMP6-202ENST00000571457 PAPPAQ13219 1627 aa16.32■□□□□ 0.2
CHMP6-202ENST00000571457 NLRP2Q9NX02 1062 aa16.32■□□□□ 0.2
CHMP6-202ENST00000571457 NFAT5O94916 1531 aa16.31■□□□□ 0.2
CHMP6-202ENST00000571457 IL2RBP14784 551 aa16.31■□□□□ 0.2
CHMP6-202ENST00000571457 ZNF827Q17R98 1081 aa16.3■□□□□ 0.2
CHMP6-202ENST00000571457 SLC27A3Q5K4L6 730 aa16.3■□□□□ 0.2
CHMP6-202ENST00000571457 KLHL34Q8N239 644 aa16.3■□□□□ 0.2
CHMP6-202ENST00000571457 KTN1Q86UP2 1357 aaKnown RBP16.29■□□□□ 0.2
CHMP6-202ENST00000571457 BTAF1O14981 1849 aa16.29■□□□□ 0.2
CHMP6-202ENST00000571457 ERBB3P21860 1342 aa16.29■□□□□ 0.2
CHMP6-202ENST00000571457 PELP1Q8IZL8 1130 aaKnown RBP16.29■□□□□ 0.2
CHMP6-202ENST00000571457 AKT1S1Q96B36 256 aa16.28■□□□□ 0.2
CHMP6-202ENST00000571457 LRRC4BQ9NT99 713 aa16.28■□□□□ 0.2
CHMP6-202ENST00000571457 GRIN3BO60391 1043 aa16.27■□□□□ 0.2
CHMP6-202ENST00000571457 TFCP2L1Q9NZI6 479 aa16.26■□□□□ 0.19
CHMP6-202ENST00000571457 QSER1Q2KHR3 1735 aa16.25■□□□□ 0.19
CHMP6-202ENST00000571457 USP31Q70CQ4 1352 aa16.25■□□□□ 0.19
CHMP6-202ENST00000571457 PNPLA7Q6ZV29 1317 aa16.24■□□□□ 0.19
CHMP6-202ENST00000571457 ANKRD24Q8TF21 1146 aa16.24■□□□□ 0.19
CHMP6-202ENST00000571457 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.23■□□□□ 0.19
CHMP6-202ENST00000571457 COL24A1Q17RW2 1714 aa16.22■□□□□ 0.19
CHMP6-202ENST00000571457 NLGN2Q8NFZ4 835 aa16.21■□□□□ 0.19
CHMP6-202ENST00000571457 DDX54Q8TDD1 881 aaKnown RBP16.21■□□□□ 0.19
CHMP6-202ENST00000571457 MON2Q7Z3U7 1717 aa16.2■□□□□ 0.18
CHMP6-202ENST00000571457 SHANK3Q9BYB0 1731 aa16.2■□□□□ 0.18
CHMP6-202ENST00000571457 L3MBTL2Q969R5 705 aa16.2■□□□□ 0.18
CHMP6-202ENST00000571457 ROCK2O75116 1388 aaKnown RBP16.2■□□□□ 0.18
CHMP6-202ENST00000571457 USP54Q70EL1 1684 aa16.2■□□□□ 0.18
CHMP6-202ENST00000571457 LTN1O94822 1766 aa16.2■□□□□ 0.18
CHMP6-202ENST00000571457 NME9Q86XW9 330 aa16.19■□□□□ 0.18
CHMP6-202ENST00000571457 SYTL4Q96C24 671 aaPredicted RBP16.19■□□□□ 0.18
CHMP6-202ENST00000571457 HDGFL2Q7Z4V5 671 aaPredicted RBP16.18■□□□□ 0.18
CHMP6-202ENST00000571457 ANKRD36BQ8N2N9 1353 aa16.17■□□□□ 0.18
CHMP6-202ENST00000571457 MSH5O43196 834 aa16.17■□□□□ 0.18
CHMP6-202ENST00000571457 YBX3P16989 372 aaKnown RBP eCLIP16.17■□□□□ 0.18
CHMP6-202ENST00000571457 HMGB2P26583 209 aaKnown RBP16.17■□□□□ 0.18
CHMP6-202ENST00000571457 PRIM1P49642 420 aaKnown RBP16.17■□□□□ 0.18
CHMP6-202ENST00000571457 SBNO2Q9Y2G9 1366 aa16.16■□□□□ 0.18
CHMP6-202ENST00000571457 IP6K1Q92551 441 aa16.16■□□□□ 0.18
CHMP6-202ENST00000571457 CCNL1Q9UK58 526 aaPredicted RBP16.16■□□□□ 0.18
CHMP6-202ENST00000571457 TUBGCP6Q96RT7 1819 aa16.15■□□□□ 0.18
CHMP6-202ENST00000571457 KCNQ4P56696 695 aa16.15■□□□□ 0.18
CHMP6-202ENST00000571457 TMC1Q8TDI8 760 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 121.8 ms