RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 LRRC7Q96NW7 1537 aa9.19□□□□□ -0.94
SMG1-215ENST00000568239 AEBP1Q8IUX7 1158 aa9.19□□□□□ -0.94
SMG1-215ENST00000568239 LAS1LQ9Y4W2 734 aaKnown RBP9.19□□□□□ -0.94
SMG1-215ENST00000568239 NWD1Q149M9 1564 aa9.19□□□□□ -0.94
SMG1-215ENST00000568239 PIK3C2AO00443 1686 aa9.19□□□□□ -0.94
SMG1-215ENST00000568239 EXOC6Q8TAG9 804 aa9.19□□□□□ -0.94
SMG1-215ENST00000568239 CCDC136Q96JN2 1154 aa9.19□□□□□ -0.94
SMG1-215ENST00000568239 MYH16Q9H6N6 1097 aa9.19□□□□□ -0.94
SMG1-215ENST00000568239 TRIM35Q9UPQ4 493 aa9.19□□□□□ -0.94
SMG1-215ENST00000568239 LMTK3Q96Q04 1460 aa9.19□□□□□ -0.94
SMG1-215ENST00000568239 BCAR3O75815 825 aa9.18□□□□□ -0.94
SMG1-215ENST00000568239 TSR2Q969E8 191 aaKnown RBP9.18□□□□□ -0.94
SMG1-215ENST00000568239 FLT4P35916 1363 aa9.18□□□□□ -0.94
SMG1-215ENST00000568239 CANXP27824 592 aaKnown RBP9.18□□□□□ -0.94
SMG1-215ENST00000568239 KRT28Q7Z3Y7 464 aa9.18□□□□□ -0.94
SMG1-215ENST00000568239 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.18□□□□□ -0.94
SMG1-215ENST00000568239 DDX17Q92841 729 aaKnown RBP9.18□□□□□ -0.94
SMG1-215ENST00000568239 SBNO1A3KN83 1393 aa9.17□□□□□ -0.94
SMG1-215ENST00000568239 NFE2L2Q16236 605 aa9.17□□□□□ -0.94
SMG1-215ENST00000568239 THUMPD2Q9BTF0 503 aaKnown RBP9.17□□□□□ -0.94
SMG1-215ENST00000568239 STRCP1A6NGW2 1772 aa9.17□□□□□ -0.94
SMG1-215ENST00000568239 ZNF335Q9H4Z2 1342 aaPredicted RBP9.17□□□□□ -0.94
SMG1-215ENST00000568239 C20orf194Q5TEA3 1177 aa9.17□□□□□ -0.94
SMG1-215ENST00000568239 CADPS2Q86UW7 1296 aa9.17□□□□□ -0.94
SMG1-215ENST00000568239 BCL2L13Q9BXK5 485 aa9.17□□□□□ -0.94
SMG1-215ENST00000568239 MSH6P52701 1360 aa9.16□□□□□ -0.94
SMG1-215ENST00000568239 FRAT1Q92837 279 aaPredicted RBP9.16□□□□□ -0.94
SMG1-215ENST00000568239 C1orf167Q5SNV9 1468 aa9.16□□□□□ -0.94
SMG1-215ENST00000568239 PEAK1Q9H792 1746 aa9.16□□□□□ -0.94
SMG1-215ENST00000568239 HOXC9P31274 260 aa9.16□□□□□ -0.94
SMG1-215ENST00000568239 CRBNQ96SW2 442 aa9.16□□□□□ -0.94
SMG1-215ENST00000568239 FANCIQ9NVI1 1328 aa9.16□□□□□ -0.94
SMG1-215ENST00000568239 NCBP3Q53F19 620 aaKnown RBP9.15□□□□□ -0.94
SMG1-215ENST00000568239 DCTN1Q14203 1278 aa9.15□□□□□ -0.94
SMG1-215ENST00000568239 EYA1Q99502 592 aa9.15□□□□□ -0.94
SMG1-215ENST00000568239 FAM83GA6ND36 823 aa9.15□□□□□ -0.95
SMG1-215ENST00000568239 EXOSC9Q06265 439 aaKnown RBP9.15□□□□□ -0.95
SMG1-215ENST00000568239 KCNH5Q8NCM2 988 aa9.15□□□□□ -0.95
SMG1-215ENST00000568239 STRCQ7RTU9 1775 aa9.14□□□□□ -0.95
SMG1-215ENST00000568239 GCP02774 474 aa9.14□□□□□ -0.95
SMG1-215ENST00000568239 MST1RQ04912 1400 aa9.13□□□□□ -0.95
SMG1-215ENST00000568239 RARSP54136 660 aaKnown RBP9.13□□□□□ -0.95
SMG1-215ENST00000568239 LMOD3Q0VAK6 560 aa9.13□□□□□ -0.95
SMG1-215ENST00000568239 USHBP1Q8N6Y0 703 aa9.13□□□□□ -0.95
SMG1-215ENST00000568239 ZC3H6P61129 1189 aaKnown RBP9.12□□□□□ -0.95
SMG1-215ENST00000568239 CALD1Q05682 793 aaKnown RBP9.12□□□□□ -0.95
SMG1-215ENST00000568239 IL16Q14005 1332 aa9.12□□□□□ -0.95
SMG1-215ENST00000568239 ELL2O00472 640 aaPredicted RBP9.12□□□□□ -0.95
SMG1-215ENST00000568239 MARF1Q9Y4F3 1742 aaKnown RBP9.12□□□□□ -0.95
SMG1-215ENST00000568239 MCM10Q7L590 875 aa9.12□□□□□ -0.95
SMG1-215ENST00000568239 IP6K1Q92551 441 aa9.12□□□□□ -0.95
SMG1-215ENST00000568239 NPHP3Q7Z494 1330 aa9.11□□□□□ -0.95
SMG1-215ENST00000568239 ARHGEF10O15013 1369 aa9.11□□□□□ -0.95
SMG1-215ENST00000568239 LTN1O94822 1766 aa9.11□□□□□ -0.95
SMG1-215ENST00000568239 DLG5Q8TDM6 1919 aa9.11□□□□□ -0.95
SMG1-215ENST00000568239 CABLES1Q8TDN4 633 aa9.11□□□□□ -0.95
SMG1-215ENST00000568239 RTF1Q92541 710 aaKnown RBP9.11□□□□□ -0.95
SMG1-215ENST00000568239 CLUAP1Q96AJ1 413 aa9.11□□□□□ -0.95
SMG1-215ENST00000568239 SMC4Q9NTJ3 1288 aa9.11□□□□□ -0.95
SMG1-215ENST00000568239 NCOA3Q9Y6Q9 1424 aa9.11□□□□□ -0.95
SMG1-215ENST00000568239 DCCP43146 1447 aa9.11□□□□□ -0.95
SMG1-215ENST00000568239 GNAI1P63096 354 aa9.11□□□□□ -0.95
SMG1-215ENST00000568239 MTHFSDQ2M296 383 aaKnown RBP9.11□□□□□ -0.95
SMG1-215ENST00000568239 IGSF1Q8N6C5 1336 aa9.11□□□□□ -0.95
SMG1-215ENST00000568239 KIF24Q5T7B8 1368 aa9.1□□□□□ -0.95
SMG1-215ENST00000568239 PANK1Q8TE04 598 aa9.1□□□□□ -0.95
SMG1-215ENST00000568239 KIF1AQ12756 1690 aa9.1□□□□□ -0.95
SMG1-215ENST00000568239 LRRC59Q96AG4 307 aaKnown RBP9.1□□□□□ -0.95
SMG1-215ENST00000568239 SLAIN2Q9P270 581 aa9.1□□□□□ -0.95
SMG1-215ENST00000568239 BRINP3Q76B58 766 aa9.09□□□□□ -0.95
SMG1-215ENST00000568239 MBIPQ9NS73 344 aa9.09□□□□□ -0.95
SMG1-215ENST00000568239 IFT57Q9NWB7 429 aa9.09□□□□□ -0.95
SMG1-215ENST00000568239 COG6Q9Y2V7 657 aa9.09□□□□□ -0.95
SMG1-215ENST00000568239 NBPF6Q5VWK0 638 aa9.09□□□□□ -0.95
SMG1-215ENST00000568239 ARHGEF25Q86VW2 580 aa9.09□□□□□ -0.95
SMG1-215ENST00000568239 NBPF4Q96M43 638 aa9.09□□□□□ -0.95
SMG1-215ENST00000568239 GAS2L2Q8NHY3 880 aa9.09□□□□□ -0.95
SMG1-215ENST00000568239 SSH1Q8WYL5 1049 aa9.09□□□□□ -0.95
SMG1-215ENST00000568239 CFAP44Q96MT7 982 aa9.09□□□□□ -0.95
SMG1-215ENST00000568239 RTL1A6NKG5 1358 aa9.08□□□□□ -0.96
SMG1-215ENST00000568239 NFAT5O94916 1531 aa9.08□□□□□ -0.96
SMG1-215ENST00000568239 RGPD1P0DJD0 1748 aa9.08□□□□□ -0.96
SMG1-215ENST00000568239 TCERG1O14776 1098 aaKnown RBP9.08□□□□□ -0.96
SMG1-215ENST00000568239 CT47B1P0C2W7 299 aaPredicted RBP9.08□□□□□ -0.96
SMG1-215ENST00000568239 FTSJ3Q8IY81 847 aaKnown RBP9.08□□□□□ -0.96
SMG1-215ENST00000568239 TNNQ9UQP3 1299 aa9.08□□□□□ -0.96
SMG1-215ENST00000568239 XIRP1Q702N8 1843 aaKnown RBP9.08□□□□□ -0.96
SMG1-215ENST00000568239 KDRP35968 1356 aa9.08□□□□□ -0.96
SMG1-215ENST00000568239 USP54Q70EL1 1684 aa9.08□□□□□ -0.96
SMG1-215ENST00000568239 PRKCSHP14314 528 aaPredicted RBP9.08□□□□□ -0.96
SMG1-215ENST00000568239 HAP1P54257 671 aaPredicted RBP9.08□□□□□ -0.96
SMG1-215ENST00000568239 TSPYL6Q8N831 410 aa9.08□□□□□ -0.96
SMG1-215ENST00000568239 MIS18AQ9NYP9 233 aa9.08□□□□□ -0.96
SMG1-215ENST00000568239 AXIN2Q9Y2T1 843 aa9.08□□□□□ -0.96
SMG1-215ENST00000568239 PDE3AQ14432 1141 aa9.07□□□□□ -0.96
SMG1-215ENST00000568239 ANKRD24Q8TF21 1146 aa9.07□□□□□ -0.96
SMG1-215ENST00000568239 TRPM3Q9HCF6 1732 aaPredicted RBP9.07□□□□□ -0.96
SMG1-215ENST00000568239 MYT1Q01538 1121 aa9.07□□□□□ -0.96
SMG1-215ENST00000568239 ZKSCAN2Q63HK3 967 aa9.07□□□□□ -0.96
SMG1-215ENST00000568239 TSHZ2Q9NRE2 1034 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms