RNA–Protein interactions for RNA: ENST00000562609.2

GTF3C1-203, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 2,824 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-203ENST00000562609 DYNC1I1O14576 645 aa17.47■□□□□ 0.39
GTF3C1-203ENST00000562609 MFAP1P55081 439 aaKnown RBP17.47■□□□□ 0.39
GTF3C1-203ENST00000562609 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.47■□□□□ 0.39
GTF3C1-203ENST00000562609 PANK1Q8TE04 598 aa17.47■□□□□ 0.39
GTF3C1-203ENST00000562609 ZRANB1Q9UGI0 708 aa17.47■□□□□ 0.39
GTF3C1-203ENST00000562609 GBP4Q96PP9 640 aa17.47■□□□□ 0.39
GTF3C1-203ENST00000562609 ZSCAN20P17040 1043 aaPredicted RBP17.46■□□□□ 0.39
GTF3C1-203ENST00000562609 USP32Q8NFA0 1604 aa17.46■□□□□ 0.39
GTF3C1-203ENST00000562609 CANXP27824 592 aaKnown RBP17.46■□□□□ 0.39
GTF3C1-203ENST00000562609 NSD2O96028 1365 aa17.46■□□□□ 0.38
GTF3C1-203ENST00000562609 WASLO00401 505 aaPredicted RBP17.45■□□□□ 0.38
GTF3C1-203ENST00000562609 PDZRN3Q9UPQ7 1066 aa17.45■□□□□ 0.38
GTF3C1-203ENST00000562609 NKTRP30414 1462 aaKnown RBP17.45■□□□□ 0.38
GTF3C1-203ENST00000562609 PDIA4P13667 645 aaKnown RBP17.45■□□□□ 0.38
GTF3C1-203ENST00000562609 NINLQ9Y2I6 1382 aa17.45■□□□□ 0.38
GTF3C1-203ENST00000562609 NRXN3Q9Y4C0 1643 aa17.45■□□□□ 0.38
GTF3C1-203ENST00000562609 BCL2L13Q9BXK5 485 aa17.44■□□□□ 0.38
GTF3C1-203ENST00000562609 NCLP19338 710 aaKnown RBP17.44■□□□□ 0.38
GTF3C1-203ENST00000562609 PDE3AQ14432 1141 aa17.44■□□□□ 0.38
GTF3C1-203ENST00000562609 CCDC94Q9BW85 323 aaPredicted RBP17.44■□□□□ 0.38
GTF3C1-203ENST00000562609 SETD1AO15047 1707 aaKnown RBP17.44■□□□□ 0.38
GTF3C1-203ENST00000562609 TMEM2Q9UHN6 1383 aa17.43■□□□□ 0.38
GTF3C1-203ENST00000562609 ZNF500O60304 480 aaPredicted RBP17.43■□□□□ 0.38
GTF3C1-203ENST00000562609 DDIT3P35638 169 aa17.43■□□□□ 0.38
GTF3C1-203ENST00000562609 NME9Q86XW9 330 aa17.43■□□□□ 0.38
GTF3C1-203ENST00000562609 NUDT16Q96DE0 195 aaKnown RBP17.43■□□□□ 0.38
GTF3C1-203ENST00000562609 NOL7Q9UMY1 257 aaKnown RBP17.43■□□□□ 0.38
GTF3C1-203ENST00000562609 HDGFP51858 240 aaKnown RBP17.42■□□□□ 0.38
GTF3C1-203ENST00000562609 PPP4R3BQ5MIZ7 849 aa17.42■□□□□ 0.38
GTF3C1-203ENST00000562609 PMFBP1Q8TBY8 1022 aa17.42■□□□□ 0.38
GTF3C1-203ENST00000562609 NAP1L2Q9ULW6 460 aaPredicted RBP17.42■□□□□ 0.38
GTF3C1-203ENST00000562609 PPIP5K1Q6PFW1 1433 aa17.4■□□□□ 0.38
GTF3C1-203ENST00000562609 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.4■□□□□ 0.38
GTF3C1-203ENST00000562609 HS1BP3Q53T59 392 aa17.4■□□□□ 0.38
GTF3C1-203ENST00000562609 PCDHB15Q9Y5E8 787 aa17.4■□□□□ 0.38
GTF3C1-203ENST00000562609 TSR2Q969E8 191 aaKnown RBP17.39■□□□□ 0.38
GTF3C1-203ENST00000562609 EMILIN1Q9Y6C2 1016 aa17.39■□□□□ 0.38
GTF3C1-203ENST00000562609 ROBO2Q9HCK4 1378 aa17.39■□□□□ 0.37
GTF3C1-203ENST00000562609 DIAPH1O60610 1272 aaKnown RBP17.39■□□□□ 0.37
GTF3C1-203ENST00000562609 PTMSP20962 102 aa17.39■□□□□ 0.37
GTF3C1-203ENST00000562609 RAB3GAP1Q15042 981 aa17.39■□□□□ 0.37
GTF3C1-203ENST00000562609 CHMP4BQ9H444 224 aaKnown RBP17.39■□□□□ 0.37
GTF3C1-203ENST00000562609 POLKQ9UBT6 870 aa17.39■□□□□ 0.37
GTF3C1-203ENST00000562609 NCOA3Q9Y6Q9 1424 aa17.38■□□□□ 0.37
GTF3C1-203ENST00000562609 TNNQ9UQP3 1299 aa17.38■□□□□ 0.37
GTF3C1-203ENST00000562609 IQSEC2Q5JU85 1478 aa17.38■□□□□ 0.37
GTF3C1-203ENST00000562609 PRR36Q9H6K5 1346 aa17.38■□□□□ 0.37
GTF3C1-203ENST00000562609 CSPP1Q1MSJ5 1256 aa17.38■□□□□ 0.37
GTF3C1-203ENST00000562609 SASS6Q6UVJ0 657 aa17.38■□□□□ 0.37
GTF3C1-203ENST00000562609 UBR1Q8IWV7 1749 aa17.37■□□□□ 0.37
GTF3C1-203ENST00000562609 DLC1Q96QB1 1528 aa17.37■□□□□ 0.37
GTF3C1-203ENST00000562609 HMOX1P09601 288 aa17.37■□□□□ 0.37
GTF3C1-203ENST00000562609 PLEKHF1Q96S99 279 aa17.37■□□□□ 0.37
GTF3C1-203ENST00000562609 PHF23Q9BUL5 403 aaPredicted RBP17.37■□□□□ 0.37
GTF3C1-203ENST00000562609 CIZ1Q9ULV3 898 aaPredicted RBP17.37■□□□□ 0.37
GTF3C1-203ENST00000562609 CCDC61Q9Y6R9 512 aa17.37■□□□□ 0.37
GTF3C1-203ENST00000562609 RRS1Q15050 365 aaKnown RBP17.37■□□□□ 0.37
GTF3C1-203ENST00000562609 NGEFQ8N5V2 710 aa17.37■□□□□ 0.37
GTF3C1-203ENST00000562609 HSP90AB1P08238 724 aaKnown RBP17.36■□□□□ 0.37
GTF3C1-203ENST00000562609 TMPOP42166 694 aaKnown RBP17.36■□□□□ 0.37
GTF3C1-203ENST00000562609 SMC5Q8IY18 1101 aa17.36■□□□□ 0.37
GTF3C1-203ENST00000562609 DDX49Q9Y6V7 483 aaKnown RBP17.36■□□□□ 0.37
GTF3C1-203ENST00000562609 ADAMTS13Q76LX8 1427 aa17.36■□□□□ 0.37
GTF3C1-203ENST00000562609 SOX12O15370 315 aa17.35■□□□□ 0.37
GTF3C1-203ENST00000562609 FOXD4L1Q9NU39 408 aa17.35■□□□□ 0.37
GTF3C1-203ENST00000562609 ZKSCAN5Q9Y2L8 839 aa17.35■□□□□ 0.37
GTF3C1-203ENST00000562609 KIF20AO95235 890 aa17.34■□□□□ 0.37
GTF3C1-203ENST00000562609 CBX1P83916 185 aa17.34■□□□□ 0.37
GTF3C1-203ENST00000562609 GTPBP4Q9BZE4 634 aaKnown RBP17.34■□□□□ 0.37
GTF3C1-203ENST00000562609 COL3A1P02461 1466 aaPredicted RBP17.34■□□□□ 0.37
GTF3C1-203ENST00000562609 WDR63Q8IWG1 891 aa17.34■□□□□ 0.37
GTF3C1-203ENST00000562609 RARSP54136 660 aaKnown RBP17.34■□□□□ 0.37
GTF3C1-203ENST00000562609 TRIM35Q9UPQ4 493 aa17.34■□□□□ 0.37
GTF3C1-203ENST00000562609 EID1Q9Y6B2 187 aa17.34■□□□□ 0.37
GTF3C1-203ENST00000562609 GOLGA6L22H0YM25 854 aa17.33■□□□□ 0.36
GTF3C1-203ENST00000562609 KLHL40Q2TBA0 621 aa17.33■□□□□ 0.36
GTF3C1-203ENST00000562609 RWDD1Q9H446 243 aaPredicted RBP17.33■□□□□ 0.36
GTF3C1-203ENST00000562609 PRKAR2BP31323 418 aa17.32■□□□□ 0.36
GTF3C1-203ENST00000562609 IBTKQ9P2D0 1353 aaPredicted RBP17.32■□□□□ 0.36
GTF3C1-203ENST00000562609 PDLIM2Q96JY6 352 aa17.32■□□□□ 0.36
GTF3C1-203ENST00000562609 AMOTL2Q9Y2J4 779 aa17.32■□□□□ 0.36
GTF3C1-203ENST00000562609 ATP7BP35670 1465 aa17.31■□□□□ 0.36
GTF3C1-203ENST00000562609 KIF20BQ96Q89 1820 aa17.31■□□□□ 0.36
GTF3C1-203ENST00000562609 CCDC27Q2M243 656 aa17.31■□□□□ 0.36
GTF3C1-203ENST00000562609 TMEM51Q9NW97 253 aa17.31■□□□□ 0.36
GTF3C1-203ENST00000562609 CPSF1Q10570 1443 aaKnown RBP17.31■□□□□ 0.36
GTF3C1-203ENST00000562609 MAP2P11137 1827 aaKnown RBP17.31■□□□□ 0.36
GTF3C1-203ENST00000562609 SNX21Q969T3 373 aa17.31■□□□□ 0.36
GTF3C1-203ENST00000562609 PHACTR3Q96KR7 559 aa17.31■□□□□ 0.36
GTF3C1-203ENST00000562609 CPS1P31327 1500 aa17.3■□□□□ 0.36
GTF3C1-203ENST00000562609 JARID2Q92833 1246 aaPredicted RBP17.3■□□□□ 0.36
GTF3C1-203ENST00000562609 COG3Q96JB2 828 aa17.3■□□□□ 0.36
GTF3C1-203ENST00000562609 ANKRD26Q9UPS8 1709 aa17.3■□□□□ 0.36
GTF3C1-203ENST00000562609 MED14O60244 1454 aa17.3■□□□□ 0.36
GTF3C1-203ENST00000562609 LETM1O95202 739 aaPredicted RBP17.3■□□□□ 0.36
GTF3C1-203ENST00000562609 RLBP1P12271 317 aa17.3■□□□□ 0.36
GTF3C1-203ENST00000562609 SSFA2P28290 1259 aa17.3■□□□□ 0.36
GTF3C1-203ENST00000562609 EXOSC9Q06265 439 aaKnown RBP17.3■□□□□ 0.36
GTF3C1-203ENST00000562609 THUMPD2Q9BTF0 503 aaKnown RBP17.29■□□□□ 0.36
GTF3C1-203ENST00000562609 RBSNQ9H1K0 784 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms