RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 CFAP45Q9UL16 551 aa12.73□□□□□ -0.37
ACTN1-216ENST00000556083 ADAMTS8Q9UP79 889 aa12.73□□□□□ -0.37
ACTN1-216ENST00000556083 STK38Q15208 465 aa12.72□□□□□ -0.37
ACTN1-216ENST00000556083 NSD2O96028 1365 aa12.72□□□□□ -0.37
ACTN1-216ENST00000556083 RAB11FIP3O75154 756 aa12.72□□□□□ -0.37
ACTN1-216ENST00000556083 SMC2O95347 1197 aa12.72□□□□□ -0.37
ACTN1-216ENST00000556083 NAP1L1P55209 391 aaKnown RBP12.72□□□□□ -0.37
ACTN1-216ENST00000556083 IKQ13123 557 aaPredicted RBP12.72□□□□□ -0.37
ACTN1-216ENST00000556083 HSP90AB3PQ58FF7 597 aa12.72□□□□□ -0.37
ACTN1-216ENST00000556083 AFAP1Q8N556 730 aa12.72□□□□□ -0.37
ACTN1-216ENST00000556083 AKAP2Q9Y2D5 859 aa12.72□□□□□ -0.37
ACTN1-216ENST00000556083 CCDC61Q9Y6R9 512 aa12.72□□□□□ -0.37
ACTN1-216ENST00000556083 DNMBPQ6XZF7 1577 aa12.72□□□□□ -0.37
ACTN1-216ENST00000556083 IQCEQ6IPM2 695 aa12.72□□□□□ -0.37
ACTN1-216ENST00000556083 TOP2BQ02880 1626 aa12.72□□□□□ -0.37
ACTN1-216ENST00000556083 AIMP1Q12904 312 aaKnown RBP12.71□□□□□ -0.37
ACTN1-216ENST00000556083 ZNF530Q6P9A1 599 aaPredicted RBP12.71□□□□□ -0.37
ACTN1-216ENST00000556083 CEP126Q9P2H0 1117 aa12.71□□□□□ -0.37
ACTN1-216ENST00000556083 ERBINQ96RT1 1412 aa12.71□□□□□ -0.37
ACTN1-216ENST00000556083 KRT85P78386 507 aa12.71□□□□□ -0.37
ACTN1-216ENST00000556083 ATF7IPQ6VMQ6 1270 aa12.71□□□□□ -0.37
ACTN1-216ENST00000556083 IFT57Q9NWB7 429 aa12.71□□□□□ -0.37
ACTN1-216ENST00000556083 MAP3K1Q13233 1512 aa12.71□□□□□ -0.37
ACTN1-216ENST00000556083 TOPBP1Q92547 1522 aa12.71□□□□□ -0.37
ACTN1-216ENST00000556083 SUPT6HQ7KZ85 1726 aaKnown RBP12.71□□□□□ -0.37
ACTN1-216ENST00000556083 MPHOSPH8Q99549 860 aa12.71□□□□□ -0.37
ACTN1-216ENST00000556083 CEP131Q9UPN4 1083 aa12.71□□□□□ -0.37
ACTN1-216ENST00000556083 LRPPRCP42704 1394 aaKnown RBP12.71□□□□□ -0.38
ACTN1-216ENST00000556083 ZNF644Q9H582 1327 aaPredicted RBP12.71□□□□□ -0.38
ACTN1-216ENST00000556083 CDK19Q9BWU1 502 aa12.71□□□□□ -0.38
ACTN1-216ENST00000556083 STARD3NLO95772 234 aa12.7□□□□□ -0.38
ACTN1-216ENST00000556083 CCDC192P0DO97 292 aa12.7□□□□□ -0.38
ACTN1-216ENST00000556083 WDHD1O75717 1129 aaPredicted RBP12.7□□□□□ -0.38
ACTN1-216ENST00000556083 HSP90AB2PQ58FF8 381 aa12.7□□□□□ -0.38
ACTN1-216ENST00000556083 DHX29Q7Z478 1369 aaKnown RBP12.7□□□□□ -0.38
ACTN1-216ENST00000556083 EXOSC9Q06265 439 aaKnown RBP12.7□□□□□ -0.38
ACTN1-216ENST00000556083 ZNF592Q92610 1267 aa12.7□□□□□ -0.38
ACTN1-216ENST00000556083 EPRSP07814 1512 aaKnown RBP12.69□□□□□ -0.38
ACTN1-216ENST00000556083 NASPP49321 788 aaPredicted RBP12.69□□□□□ -0.38
ACTN1-216ENST00000556083 NEK4P51957 841 aa12.69□□□□□ -0.38
ACTN1-216ENST00000556083 ALDH1L2Q3SY69 923 aa12.69□□□□□ -0.38
ACTN1-216ENST00000556083 CCDC191Q8NCU4 936 aa12.69□□□□□ -0.38
ACTN1-216ENST00000556083 PHAXQ9H814 394 aaKnown RBP12.69□□□□□ -0.38
ACTN1-216ENST00000556083 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.69□□□□□ -0.38
ACTN1-216ENST00000556083 PLEKHH1Q9ULM0 1364 aa12.69□□□□□ -0.38
ACTN1-216ENST00000556083 TSPY26PQ9H489 355 aa12.69□□□□□ -0.38
ACTN1-216ENST00000556083 TMOD2Q9NZR1 351 aa12.69□□□□□ -0.38
ACTN1-216ENST00000556083 CCDC196A0A1B0GTZ2 297 aa12.69□□□□□ -0.38
ACTN1-216ENST00000556083 KRT18P05783 430 aaKnown RBP12.69□□□□□ -0.38
ACTN1-216ENST00000556083 KIF2AO00139 706 aaPredicted RBP12.68□□□□□ -0.38
ACTN1-216ENST00000556083 CAGE1Q8TC20 777 aa12.68□□□□□ -0.38
ACTN1-216ENST00000556083 NECTIN2Q92692 538 aa12.68□□□□□ -0.38
ACTN1-216ENST00000556083 CCDC69A6NI79 296 aa12.68□□□□□ -0.38
ACTN1-216ENST00000556083 TOM1L2Q6ZVM7 507 aa12.68□□□□□ -0.38
ACTN1-216ENST00000556083 SLF2Q8IX21 1173 aa12.68□□□□□ -0.38
ACTN1-216ENST00000556083 TEX13AQ9BXU3 409 aaPredicted RBP12.68□□□□□ -0.38
ACTN1-216ENST00000556083 SLC4A2P04920 1241 aa12.68□□□□□ -0.38
ACTN1-216ENST00000556083 MVPQ14764 893 aaKnown RBP12.68□□□□□ -0.38
ACTN1-216ENST00000556083 AKNAQ7Z591 1439 aa12.67□□□□□ -0.38
ACTN1-216ENST00000556083 HMGB1P09429 215 aaKnown RBP12.67□□□□□ -0.38
ACTN1-216ENST00000556083 PRDM11Q9NQV5 511 aa12.67□□□□□ -0.38
ACTN1-216ENST00000556083 DMRT2Q9Y5R5 561 aa12.67□□□□□ -0.38
ACTN1-216ENST00000556083 PDE4CQ08493 712 aa12.67□□□□□ -0.38
ACTN1-216ENST00000556083 NFE2L2Q16236 605 aa12.67□□□□□ -0.38
ACTN1-216ENST00000556083 TRIM5Q9C035 493 aa12.67□□□□□ -0.38
ACTN1-216ENST00000556083 KIF20AO95235 890 aa12.67□□□□□ -0.38
ACTN1-216ENST00000556083 IGHMBP2P38935 993 aaKnown RBP12.67□□□□□ -0.38
ACTN1-216ENST00000556083 TMEM132EQ6IEE7 984 aa12.67□□□□□ -0.38
ACTN1-216ENST00000556083 SULT6B1Q6IMI4 303 aa12.67□□□□□ -0.38
ACTN1-216ENST00000556083 BLOC1S2Q6QNY1 142 aa12.67□□□□□ -0.38
ACTN1-216ENST00000556083 RBM42Q9BTD8 480 aaKnown RBP12.67□□□□□ -0.38
ACTN1-216ENST00000556083 SMTNL1A8MU46 457 aa12.67□□□□□ -0.38
ACTN1-216ENST00000556083 ERLIN1O75477 346 aa12.67□□□□□ -0.38
ACTN1-216ENST00000556083 TIAM1Q13009 1591 aa12.66□□□□□ -0.38
ACTN1-216ENST00000556083 LARP1Q6PKG0 1096 aaKnown RBP12.66□□□□□ -0.38
ACTN1-216ENST00000556083 PPFIBP1Q86W92 1011 aa12.66□□□□□ -0.38
ACTN1-216ENST00000556083 PANK1Q8TE04 598 aa12.66□□□□□ -0.38
ACTN1-216ENST00000556083 ZNF771Q7L3S4 317 aaPredicted RBP12.66□□□□□ -0.38
ACTN1-216ENST00000556083 PYM1Q9BRP8 204 aaKnown RBP12.66□□□□□ -0.38
ACTN1-216ENST00000556083 CCDC66A2RUB6 948 aa12.65□□□□□ -0.38
ACTN1-216ENST00000556083 CETN2P41208 172 aa12.65□□□□□ -0.38
ACTN1-216ENST00000556083 PDZRN3Q9UPQ7 1066 aa12.65□□□□□ -0.38
ACTN1-216ENST00000556083 PPP4R3BQ5MIZ7 849 aa12.65□□□□□ -0.38
ACTN1-216ENST00000556083 DNAJC2Q99543 621 aaKnown RBP12.65□□□□□ -0.38
ACTN1-216ENST00000556083 UBAC1Q9BSL1 405 aa12.65□□□□□ -0.38
ACTN1-216ENST00000556083 GLRX3O76003 335 aaKnown RBP12.65□□□□□ -0.38
ACTN1-216ENST00000556083 PRKCSHP14314 528 aaPredicted RBP12.65□□□□□ -0.38
ACTN1-216ENST00000556083 TRAF1Q13077 416 aa12.65□□□□□ -0.38
ACTN1-216ENST00000556083 CC2D2AQ9P2K1 1620 aa12.65□□□□□ -0.38
ACTN1-216ENST00000556083 PPP1R12BO60237 982 aaPredicted RBP12.65□□□□□ -0.38
ACTN1-216ENST00000556083 POTEJP0CG39 1038 aa12.65□□□□□ -0.38
ACTN1-216ENST00000556083 KIF1BPQ96EK5 621 aa12.65□□□□□ -0.38
ACTN1-216ENST00000556083 LAMC3Q9Y6N6 1575 aa12.65□□□□□ -0.38
ACTN1-216ENST00000556083 ARAP1Q96P48 1450 aa12.65□□□□□ -0.39
ACTN1-216ENST00000556083 TNIP1Q15025 636 aa12.64□□□□□ -0.39
ACTN1-216ENST00000556083 GNAT3A8MTJ3 354 aa12.64□□□□□ -0.39
ACTN1-216ENST00000556083 TMEM132AQ24JP5 1023 aa12.64□□□□□ -0.39
ACTN1-216ENST00000556083 CABP1Q9NZU7 370 aa12.64□□□□□ -0.39
ACTN1-216ENST00000556083 U3KPZ7 1027 aaPredicted RBP12.64□□□□□ -0.39
ACTN1-216ENST00000556083 ABCA10Q8WWZ4 1543 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 126.5 ms