RNA–Protein interactions for RNA: ENST00000553882.1

ACTN1-211, Transcript of actinin alpha 1, humanhuman

TSL 2

Gene ACTN1, Length 2,636 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-211ENST00000553882 COG3Q96JB2 828 aa18.38■□□□□ 0.53
ACTN1-211ENST00000553882 ESF1Q9H501 851 aaKnown RBP18.38■□□□□ 0.53
ACTN1-211ENST00000553882 ANTXR1Q9H6X2 564 aa18.37■□□□□ 0.53
ACTN1-211ENST00000553882 DCTN1Q14203 1278 aa18.37■□□□□ 0.53
ACTN1-211ENST00000553882 AGLP35573 1532 aa18.37■□□□□ 0.53
ACTN1-211ENST00000553882 CCDC61Q9Y6R9 512 aa18.36■□□□□ 0.53
ACTN1-211ENST00000553882 NUTM2FA1L443 756 aa18.36■□□□□ 0.53
ACTN1-211ENST00000553882 GNAI1P63096 354 aa18.36■□□□□ 0.53
ACTN1-211ENST00000553882 NUCB1Q02818 461 aa18.36■□□□□ 0.53
ACTN1-211ENST00000553882 MRPL50Q8N5N7 158 aaKnown RBP18.36■□□□□ 0.53
ACTN1-211ENST00000553882 CPS1P31327 1500 aa18.35■□□□□ 0.53
ACTN1-211ENST00000553882 NRXN3Q9Y4C0 1643 aa18.35■□□□□ 0.53
ACTN1-211ENST00000553882 ZBTB7BO15156 539 aaPredicted RBP18.34■□□□□ 0.53
ACTN1-211ENST00000553882 CALD1Q05682 793 aaKnown RBP18.34■□□□□ 0.53
ACTN1-211ENST00000553882 CHD1LQ86WJ1 897 aa18.34■□□□□ 0.53
ACTN1-211ENST00000553882 IFT57Q9NWB7 429 aa18.34■□□□□ 0.53
ACTN1-211ENST00000553882 TWISTNBQ3B726 338 aaPredicted RBP18.34■□□□□ 0.53
ACTN1-211ENST00000553882 C8orf58Q8NAV2 365 aa18.34■□□□□ 0.53
ACTN1-211ENST00000553882 ANKRD45Q5TZF3 282 aa18.33■□□□□ 0.53
ACTN1-211ENST00000553882 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.33■□□□□ 0.53
ACTN1-211ENST00000553882 ZNF428Q96B54 188 aa18.33■□□□□ 0.53
ACTN1-211ENST00000553882 CDK12Q9NYV4 1490 aaPredicted RBP18.33■□□□□ 0.53
ACTN1-211ENST00000553882 REREQ9P2R6 1566 aa18.33■□□□□ 0.53
ACTN1-211ENST00000553882 PRR36Q9H6K5 1346 aa18.32■□□□□ 0.52
ACTN1-211ENST00000553882 BRPF1P55201 1214 aaPredicted RBP18.32■□□□□ 0.52
ACTN1-211ENST00000553882 AEBP1Q8IUX7 1158 aa18.32■□□□□ 0.52
ACTN1-211ENST00000553882 ZNF853P0CG23 659 aa18.31■□□□□ 0.52
ACTN1-211ENST00000553882 CFAP44Q96MT7 982 aa18.31■□□□□ 0.52
ACTN1-211ENST00000553882 AATKQ6ZMQ8 1374 aa18.3■□□□□ 0.52
ACTN1-211ENST00000553882 SOX12O15370 315 aa18.3■□□□□ 0.52
ACTN1-211ENST00000553882 SIRT2Q8IXJ6 389 aa18.29■□□□□ 0.52
ACTN1-211ENST00000553882 PTCH1Q13635 1447 aa18.28■□□□□ 0.52
ACTN1-211ENST00000553882 LMOD3Q0VAK6 560 aa18.28■□□□□ 0.52
ACTN1-211ENST00000553882 SULT6B1Q6IMI4 303 aa18.28■□□□□ 0.52
ACTN1-211ENST00000553882 ARHGAP45Q92619 1136 aa18.28■□□□□ 0.52
ACTN1-211ENST00000553882 DLG5Q8TDM6 1919 aa18.28■□□□□ 0.52
ACTN1-211ENST00000553882 KRT24Q2M2I5 525 aa18.28■□□□□ 0.52
ACTN1-211ENST00000553882 ROBO2Q9HCK4 1378 aa18.27■□□□□ 0.52
ACTN1-211ENST00000553882 ABCC4O15439 1325 aa18.27■□□□□ 0.52
ACTN1-211ENST00000553882 EIF4A2Q14240 407 aaKnown RBP18.26■□□□□ 0.51
ACTN1-211ENST00000553882 HDGFP51858 240 aaKnown RBP18.25■□□□□ 0.51
ACTN1-211ENST00000553882 GCC1Q96CN9 775 aa18.25■□□□□ 0.51
ACTN1-211ENST00000553882 ZNF692Q9BU19 519 aaPredicted RBP18.25■□□□□ 0.51
ACTN1-211ENST00000553882 PIK3R4Q99570 1358 aa18.25■□□□□ 0.51
ACTN1-211ENST00000553882 MCM10Q7L590 875 aa18.25■□□□□ 0.51
ACTN1-211ENST00000553882 HSCBQ8IWL3 235 aa18.25■□□□□ 0.51
ACTN1-211ENST00000553882 MON2Q7Z3U7 1717 aa18.24■□□□□ 0.51
ACTN1-211ENST00000553882 BMP2KLQ5H9B9 411 aa18.24■□□□□ 0.51
ACTN1-211ENST00000553882 ARXQ96QS3 562 aa18.24■□□□□ 0.51
ACTN1-211ENST00000553882 CHMP4BQ9H444 224 aaKnown RBP18.24■□□□□ 0.51
ACTN1-211ENST00000553882 ACEP12821 1306 aa18.24■□□□□ 0.51
ACTN1-211ENST00000553882 TNRQ92752 1358 aa18.24■□□□□ 0.51
ACTN1-211ENST00000553882 HSP90AB2PQ58FF8 381 aa18.23■□□□□ 0.51
ACTN1-211ENST00000553882 TECPR2O15040 1411 aa18.23■□□□□ 0.51
ACTN1-211ENST00000553882 TTC21BQ7Z4L5 1316 aa18.23■□□□□ 0.51
ACTN1-211ENST00000553882 API5Q9BZZ5 524 aaKnown RBP18.22■□□□□ 0.51
ACTN1-211ENST00000553882 C3P01024 1663 aa18.22■□□□□ 0.51
ACTN1-211ENST00000553882 TMEM2Q9UHN6 1383 aa18.22■□□□□ 0.51
ACTN1-211ENST00000553882 ITSN1Q15811 1721 aa18.22■□□□□ 0.51
ACTN1-211ENST00000553882 PLPPR3Q6T4P5 718 aa18.21■□□□□ 0.51
ACTN1-211ENST00000553882 SLC26A8Q96RN1 970 aa18.21■□□□□ 0.51
ACTN1-211ENST00000553882 RBM25P49756 843 aaKnown RBP18.21■□□□□ 0.51
ACTN1-211ENST00000553882 LTKP29376 864 aa18.2■□□□□ 0.5
ACTN1-211ENST00000553882 SIRT1Q96EB6 747 aa18.2■□□□□ 0.5
ACTN1-211ENST00000553882 CHMP5Q9NZZ3 219 aa18.2■□□□□ 0.5
ACTN1-211ENST00000553882 TBC1D9Q6ZT07 1266 aa18.2■□□□□ 0.5
ACTN1-211ENST00000553882 GZF1Q9H116 711 aaPredicted RBP18.2■□□□□ 0.5
ACTN1-211ENST00000553882 AKAP12Q02952 1782 aa18.2■□□□□ 0.5
ACTN1-211ENST00000553882 MCM4P33991 863 aa18.19■□□□□ 0.5
ACTN1-211ENST00000553882 KNDC1Q76NI1 1749 aa18.19■□□□□ 0.5
ACTN1-211ENST00000553882 MIS18AQ9NYP9 233 aa18.19■□□□□ 0.5
ACTN1-211ENST00000553882 ADAMTS13Q76LX8 1427 aa18.18■□□□□ 0.5
ACTN1-211ENST00000553882 CEBPAP49715 358 aaPredicted RBP18.18■□□□□ 0.5
ACTN1-211ENST00000553882 APBB1O00213 710 aa18.16■□□□□ 0.5
ACTN1-211ENST00000553882 KIF2CQ99661 725 aa18.16■□□□□ 0.5
ACTN1-211ENST00000553882 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.16■□□□□ 0.5
ACTN1-211ENST00000553882 CHL1O00533 1208 aa18.16■□□□□ 0.5
ACTN1-211ENST00000553882 FOXO3O43524 673 aa18.16■□□□□ 0.5
ACTN1-211ENST00000553882 CD2BP2O95400 341 aaKnown RBP18.16■□□□□ 0.5
ACTN1-211ENST00000553882 RBM42Q9BTD8 480 aaKnown RBP18.16■□□□□ 0.5
ACTN1-211ENST00000553882 FOXD4L1Q9NU39 408 aa18.16■□□□□ 0.5
ACTN1-211ENST00000553882 HSP90AB1P08238 724 aaKnown RBP18.15■□□□□ 0.5
ACTN1-211ENST00000553882 C16orf71Q8IYS4 520 aaPredicted RBP18.15■□□□□ 0.5
ACTN1-211ENST00000553882 OVOS2A0A0J9YW53 1432 aa18.15■□□□□ 0.5
ACTN1-211ENST00000553882 OVOS2Q6IE36 1432 aa18.15■□□□□ 0.5
ACTN1-211ENST00000553882 GSPT1P15170 499 aaKnown RBP18.15■□□□□ 0.5
ACTN1-211ENST00000553882 UBR1Q8IWV7 1749 aa18.14■□□□□ 0.5
ACTN1-211ENST00000553882 USP6P35125 1406 aa18.14■□□□□ 0.5
ACTN1-211ENST00000553882 INTS3Q68E01 1043 aaKnown RBP18.14■□□□□ 0.49
ACTN1-211ENST00000553882 PLEKHG3A1L390 1219 aa18.13■□□□□ 0.49
ACTN1-211ENST00000553882 PLEKHM2Q8IWE5 1019 aa18.13■□□□□ 0.49
ACTN1-211ENST00000553882 NRKQ7Z2Y5 1582 aa18.13■□□□□ 0.49
ACTN1-211ENST00000553882 MSH6P52701 1360 aa18.13■□□□□ 0.49
ACTN1-211ENST00000553882 OTUD7AQ8TE49 926 aaPredicted RBP18.13■□□□□ 0.49
ACTN1-211ENST00000553882 SNX21Q969T3 373 aa18.13■□□□□ 0.49
ACTN1-211ENST00000553882 MAP3K19Q56UN5 1328 aa18.13■□□□□ 0.49
ACTN1-211ENST00000553882 HSP90AA1P07900 732 aaKnown RBP18.12■□□□□ 0.49
ACTN1-211ENST00000553882 MEIS3Q99687 375 aa18.12■□□□□ 0.49
ACTN1-211ENST00000553882 DCTPP1Q9H773 170 aa18.12■□□□□ 0.49
ACTN1-211ENST00000553882 PEAK1Q9H792 1746 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms