RNA–Protein interactions for RNA: ENST00000544506.1

LEMD3-205, Transcript of LEM domain containing 3, human

TSL 5

Gene LEMD3, Length 412 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LEMD3-205	ENST00000544506	CEP126	Q9P2H0	1117 aa		10.54	□□□□□ -0.72
LEMD3-205	ENST00000544506	CYP4X1	Q8N118	509 aa		10.53	□□□□□ -0.72
LEMD3-205	ENST00000544506	SNIP1	Q8TAD8	396 aa	Known RBP	10.53	□□□□□ -0.72
LEMD3-205	ENST00000544506	KCTD15	Q96SI1	283 aa	Predicted RBP	10.53	□□□□□ -0.72
LEMD3-205	ENST00000544506	TOR4A	Q9NXH8	423 aa		10.53	□□□□□ -0.72
LEMD3-205	ENST00000544506	ADH1C	P00326	375 aa		10.52	□□□□□ -0.73
LEMD3-205	ENST00000544506	ALDH1A1	P00352	501 aa		10.52	□□□□□ -0.73
LEMD3-205	ENST00000544506	FSHR	P23945	695 aa		10.52	□□□□□ -0.73
LEMD3-205	ENST00000544506	TTC24	A2A3L6	582 aa	Predicted RBP	10.51	□□□□□ -0.73
LEMD3-205	ENST00000544506	ESPN	B1AK53	854 aa		10.51	□□□□□ -0.73
LEMD3-205	ENST00000544506	GIGYF1	O75420	1035 aa	Predicted RBP	10.51	□□□□□ -0.73
LEMD3-205	ENST00000544506	GRM5	P41594	1212 aa		10.51	□□□□□ -0.73
LEMD3-205	ENST00000544506	UCN2	Q96RP3	112 aa		10.51	□□□□□ -0.73
LEMD3-205	ENST00000544506		J3QL48	77 aa		10.5	□□□□□ -0.73
LEMD3-205	ENST00000544506	INTS6L	Q5JSJ4	861 aa	Known RBP	10.5	□□□□□ -0.73
LEMD3-205	ENST00000544506	PDZRN3	Q9UPQ7	1066 aa		10.5	□□□□□ -0.73
LEMD3-205	ENST00000544506	PIK3CD	O00329	1044 aa		10.49	□□□□□ -0.73
LEMD3-205	ENST00000544506	SLFNL1	Q499Z3	407 aa		10.49	□□□□□ -0.73
LEMD3-205	ENST00000544506	RAB15	P59190	212 aa		10.48	□□□□□ -0.73
LEMD3-205	ENST00000544506	PHTF2	Q8N3S3	785 aa		10.48	□□□□□ -0.73
LEMD3-205	ENST00000544506	WASF2	Q9Y6W5	498 aa		10.48	□□□□□ -0.73
LEMD3-205	ENST00000544506	NR3C2	P08235	984 aa		10.47	□□□□□ -0.73
LEMD3-205	ENST00000544506	SMPD1	P17405	629 aa		10.47	□□□□□ -0.73
LEMD3-205	ENST00000544506	NR5A1	Q13285	461 aa		10.47	□□□□□ -0.73
LEMD3-205	ENST00000544506	RNF135	Q8IUD6	432 aa		10.47	□□□□□ -0.73
LEMD3-205	ENST00000544506	SEPT12	Q8IYM1	358 aa		10.47	□□□□□ -0.73
LEMD3-205	ENST00000544506	CCDC82	Q8N4S0	544 aa		10.47	□□□□□ -0.73
LEMD3-205	ENST00000544506	NNT	Q13423	1086 aa		10.46	□□□□□ -0.73
LEMD3-205	ENST00000544506	RNF20	Q5VTR2	975 aa		10.46	□□□□□ -0.73
LEMD3-205	ENST00000544506	CCDC97	Q96F63	343 aa	Predicted RBP	10.45	□□□□□ -0.74
LEMD3-205	ENST00000544506	CCDC85A	Q96PX6	553 aa	Predicted RBP	10.45	□□□□□ -0.74
LEMD3-205	ENST00000544506	TBC1D9	Q6ZT07	1266 aa		10.44	□□□□□ -0.74
LEMD3-205	ENST00000544506	CCDC116	Q8IYX3	515 aa		10.44	□□□□□ -0.74
LEMD3-205	ENST00000544506	ERVH48-1	M5A8F1	160 aa		10.43	□□□□□ -0.74
LEMD3-205	ENST00000544506	GFRA3	O60609	400 aa		10.43	□□□□□ -0.74
LEMD3-205	ENST00000544506	SKI	P12755	728 aa		10.43	□□□□□ -0.74
LEMD3-205	ENST00000544506	TSGA10IP	Q3SY00	556 aa		10.43	□□□□□ -0.74
LEMD3-205	ENST00000544506	PLPP7	Q8NBV4	271 aa		10.43	□□□□□ -0.74
LEMD3-205	ENST00000544506	NFATC2IP	Q8NCF5	419 aa		10.43	□□□□□ -0.74
LEMD3-205	ENST00000544506	PPP1R12C	Q9BZL4	782 aa		10.43	□□□□□ -0.74
LEMD3-205	ENST00000544506	SERPINA10	Q9UK55	444 aa		10.43	□□□□□ -0.74
LEMD3-205	ENST00000544506	CHIC2	Q9UKJ5	165 aa		10.43	□□□□□ -0.74
LEMD3-205	ENST00000544506	PALM3	A6NDB9	673 aa	Predicted RBP	10.42	□□□□□ -0.74
LEMD3-205	ENST00000544506	DHX9	Q08211	1270 aa	Known RBP	10.42	□□□□□ -0.74
LEMD3-205	ENST00000544506	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	10.42	□□□□□ -0.74
LEMD3-205	ENST00000544506	PCDHB11	Q9Y5F2	797 aa		10.42	□□□□□ -0.74
LEMD3-205	ENST00000544506	FAM187A	A6NFU0	413 aa		10.41	□□□□□ -0.74
LEMD3-205	ENST00000544506	NRG2	O14511	850 aa	Predicted RBP	10.41	□□□□□ -0.74
LEMD3-205	ENST00000544506	ATP9B	O43861	1147 aa		10.41	□□□□□ -0.74
LEMD3-205	ENST00000544506	TRAF7	Q6Q0C0	670 aa		10.41	□□□□□ -0.74
LEMD3-205	ENST00000544506	CCDC125	Q86Z20	511 aa		10.41	□□□□□ -0.74
LEMD3-205	ENST00000544506	HPS1	Q92902	700 aa		10.41	□□□□□ -0.74
LEMD3-205	ENST00000544506	TMPRSS4	Q9NRS4	437 aa		10.41	□□□□□ -0.74
LEMD3-205	ENST00000544506	TFIP11	Q9UBB9	837 aa	Known RBP	10.41	□□□□□ -0.74
LEMD3-205	ENST00000544506	DOLK	Q9UPQ8	538 aa		10.41	□□□□□ -0.74
LEMD3-205	ENST00000544506	USP17L5	A8MUK1	530 aa		10.4	□□□□□ -0.74
LEMD3-205	ENST00000544506	ARID3A	Q99856	593 aa		10.4	□□□□□ -0.74
LEMD3-205	ENST00000544506	CDCA7	Q9BWT1	371 aa	Predicted RBP	10.4	□□□□□ -0.74
LEMD3-205	ENST00000544506	MAP7D1	Q3KQU3	841 aa		10.39	□□□□□ -0.75
LEMD3-205	ENST00000544506	CFAP70	Q5T0N1	1121 aa		10.39	□□□□□ -0.75
LEMD3-205	ENST00000544506	ZNF784	Q8NCA9	323 aa	Predicted RBP	10.39	□□□□□ -0.75
LEMD3-205	ENST00000544506	MAFB	Q9Y5Q3	323 aa	Predicted RBP	10.39	□□□□□ -0.75
LEMD3-205	ENST00000544506	EMILIN1	Q9Y6C2	1016 aa		10.39	□□□□□ -0.75
LEMD3-205	ENST00000544506	USP17L3	A6NCW0	530 aa		10.38	□□□□□ -0.75
LEMD3-205	ENST00000544506	USP17L4	A6NCW7	530 aa		10.38	□□□□□ -0.75
LEMD3-205	ENST00000544506	OXLD1	Q5BKU9	147 aa		10.38	□□□□□ -0.75
LEMD3-205	ENST00000544506	USP17L2	Q6R6M4	530 aa		10.38	□□□□□ -0.75
LEMD3-205	ENST00000544506	USP17L1	Q7RTZ2	530 aa		10.38	□□□□□ -0.75
LEMD3-205	ENST00000544506	DEPDC4	Q8N2C3	294 aa		10.38	□□□□□ -0.75
LEMD3-205	ENST00000544506	WDR4	P57081	412 aa	Known RBP	10.37	□□□□□ -0.75
LEMD3-205	ENST00000544506	NCOA4	Q13772	614 aa		10.37	□□□□□ -0.75
LEMD3-205	ENST00000544506	KLF16	Q9BXK1	252 aa	Predicted RBP	10.37	□□□□□ -0.75
LEMD3-205	ENST00000544506	IRX2	Q9BZI1	471 aa	Predicted RBP	10.37	□□□□□ -0.75
LEMD3-205	ENST00000544506	CYLD	Q9NQC7	956 aa		10.37	□□□□□ -0.75
LEMD3-205	ENST00000544506	PGPEP1	Q9NXJ5	209 aa		10.37	□□□□□ -0.75
LEMD3-205	ENST00000544506	ZIC2	O95409	532 aa	Predicted RBP	10.36	□□□□□ -0.75
LEMD3-205	ENST00000544506	TIMP2	P16035	220 aa		10.36	□□□□□ -0.75
LEMD3-205	ENST00000544506	LMOD1	P29536	600 aa	Predicted RBP	10.36	□□□□□ -0.75
LEMD3-205	ENST00000544506	SCTR	P47872	440 aa		10.36	□□□□□ -0.75
LEMD3-205	ENST00000544506	LAPTM4A	Q15012	233 aa		10.36	□□□□□ -0.75
LEMD3-205	ENST00000544506	PLEKHM2	Q8IWE5	1019 aa		10.36	□□□□□ -0.75
LEMD3-205	ENST00000544506	ITPKC	Q96DU7	683 aa		10.36	□□□□□ -0.75
LEMD3-205	ENST00000544506	ZFAND3	Q9H8U3	227 aa		10.36	□□□□□ -0.75
LEMD3-205	ENST00000544506	LILRA1	O75019	489 aa		10.35	□□□□□ -0.75
LEMD3-205	ENST00000544506	ERVK-9	P63128	1117 aa		10.35	□□□□□ -0.75
LEMD3-205	ENST00000544506	PKDCC	Q504Y2	493 aa		10.35	□□□□□ -0.75
LEMD3-205	ENST00000544506	DGAT1	O75907	488 aa		10.34	□□□□□ -0.75
LEMD3-205	ENST00000544506	AVP	P01185	164 aa		10.34	□□□□□ -0.75
LEMD3-205	ENST00000544506	RFX1	P22670	979 aa		10.34	□□□□□ -0.75
LEMD3-205	ENST00000544506	MYT1	Q01538	1121 aa		10.34	□□□□□ -0.75
LEMD3-205	ENST00000544506	EML3	Q32P44	896 aa		10.34	□□□□□ -0.75
LEMD3-205	ENST00000544506	CC2D2B	Q6DHV5	1058 aa		10.34	□□□□□ -0.75
LEMD3-205	ENST00000544506	LZTS3	O60299	673 aa	Predicted RBP	10.33	□□□□□ -0.76
LEMD3-205	ENST00000544506	CBLB	Q13191	982 aa		10.32	□□□□□ -0.76
LEMD3-205	ENST00000544506	CAPN5	O15484	640 aa	Predicted RBP	10.31	□□□□□ -0.76
LEMD3-205	ENST00000544506	MYC	P01106	439 aa	Predicted RBP	10.31	□□□□□ -0.76
LEMD3-205	ENST00000544506	ADD1	P35611	737 aa	Known RBP	10.31	□□□□□ -0.76
LEMD3-205	ENST00000544506	USP4	Q13107	963 aa		10.31	□□□□□ -0.76
LEMD3-205	ENST00000544506	TRIM52	Q96A61	297 aa		10.31	□□□□□ -0.76
LEMD3-205	ENST00000544506	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	10.3	□□□□□ -0.76

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