RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 NOS1P29475 1434 aa4.75□□□□□ -1.65
MCF2-210ENST00000536274 MYOM3Q5VTT5 1437 aa4.75□□□□□ -1.65
MCF2-210ENST00000536274 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.75□□□□□ -1.65
MCF2-210ENST00000536274 ATP2B3Q16720 1220 aa4.75□□□□□ -1.65
MCF2-210ENST00000536274 OCEL1Q9H607 264 aa4.75□□□□□ -1.65
MCF2-210ENST00000536274 PANK3Q9H999 370 aa4.75□□□□□ -1.65
MCF2-210ENST00000536274 XRN1Q8IZH2 1706 aaKnown RBP4.75□□□□□ -1.65
MCF2-210ENST00000536274 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.75□□□□□ -1.65
MCF2-210ENST00000536274 ROBO1Q9Y6N7 1651 aa4.75□□□□□ -1.65
MCF2-210ENST00000536274 COL22A1Q8NFW1 1626 aaPredicted RBP4.74□□□□□ -1.65
MCF2-210ENST00000536274 FAM161AQ3B820 660 aa4.74□□□□□ -1.65
MCF2-210ENST00000536274 AFAP1Q8N556 730 aa4.74□□□□□ -1.65
MCF2-210ENST00000536274 USP19O94966 1318 aa4.74□□□□□ -1.65
MCF2-210ENST00000536274 PHLPP1O60346 1717 aa4.74□□□□□ -1.65
MCF2-210ENST00000536274 CDK11BP21127 795 aaKnown RBP4.74□□□□□ -1.65
MCF2-210ENST00000536274 EP400NLQ6ZTU2 488 aa4.74□□□□□ -1.65
MCF2-210ENST00000536274 SLC52A1Q9NWF4 448 aa4.74□□□□□ -1.65
MCF2-210ENST00000536274 OFD1O75665 1012 aa4.73□□□□□ -1.65
MCF2-210ENST00000536274 MCM4P33991 863 aa4.73□□□□□ -1.65
MCF2-210ENST00000536274 MRE11P49959 708 aa4.73□□□□□ -1.65
MCF2-210ENST00000536274 ANKLE2Q86XL3 938 aa4.73□□□□□ -1.65
MCF2-210ENST00000536274 TRIM35Q9UPQ4 493 aa4.73□□□□□ -1.65
MCF2-210ENST00000536274 SETBP1Q9Y6X0 1596 aa4.73□□□□□ -1.65
MCF2-210ENST00000536274 IFNL1Q8IU54 200 aa4.73□□□□□ -1.65
MCF2-210ENST00000536274 ANTXR1Q9H6X2 564 aa4.73□□□□□ -1.65
MCF2-210ENST00000536274 MTUS2Q5JR59 1369 aa4.73□□□□□ -1.65
MCF2-210ENST00000536274 IRX5P78411 483 aaPredicted RBP4.73□□□□□ -1.65
MCF2-210ENST00000536274 TMEM131LA2VDJ0 1609 aa4.72□□□□□ -1.65
MCF2-210ENST00000536274 TRPM2O94759 1503 aa4.72□□□□□ -1.65
MCF2-210ENST00000536274 KCNJ4P48050 445 aa4.72□□□□□ -1.65
MCF2-210ENST00000536274 PSEN1P49768 467 aa4.72□□□□□ -1.65
MCF2-210ENST00000536274 SETD5Q9C0A6 1442 aa4.72□□□□□ -1.65
MCF2-210ENST00000536274 MSNP26038 577 aaKnown RBP4.72□□□□□ -1.65
MCF2-210ENST00000536274 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.72□□□□□ -1.65
MCF2-210ENST00000536274 CNPY4Q8N129 248 aa4.72□□□□□ -1.65
MCF2-210ENST00000536274 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.72□□□□□ -1.65
MCF2-210ENST00000536274 ZNF335Q9H4Z2 1342 aaPredicted RBP4.72□□□□□ -1.65
MCF2-210ENST00000536274 PYGBP11216 843 aa4.71□□□□□ -1.65
MCF2-210ENST00000536274 BRD2P25440 801 aaKnown RBP4.71□□□□□ -1.65
MCF2-210ENST00000536274 RGS22Q8NE09 1264 aa4.71□□□□□ -1.65
MCF2-210ENST00000536274 TBC1D2Q9BYX2 928 aa4.71□□□□□ -1.65
MCF2-210ENST00000536274 ATP1B4Q9UN42 357 aaPredicted RBP4.71□□□□□ -1.65
MCF2-210ENST00000536274 ZFYVE9O95405 1425 aa4.71□□□□□ -1.65
MCF2-210ENST00000536274 LRP5O75197 1615 aa4.71□□□□□ -1.66
MCF2-210ENST00000536274 UTP14CQ5TAP6 766 aaKnown RBP4.71□□□□□ -1.66
MCF2-210ENST00000536274 CCDC94Q9BW85 323 aaPredicted RBP4.71□□□□□ -1.66
MCF2-210ENST00000536274 CFDP1Q9UEE9 299 aaPredicted RBP4.71□□□□□ -1.66
MCF2-210ENST00000536274 PLEKHG1Q9ULL1 1385 aa4.71□□□□□ -1.66
MCF2-210ENST00000536274 MARF1Q9Y4F3 1742 aaKnown RBP4.71□□□□□ -1.66
MCF2-210ENST00000536274 UBAP1LF5GYI3 381 aa4.71□□□□□ -1.66
MCF2-210ENST00000536274 TEX2Q8IWB9 1127 aa4.71□□□□□ -1.66
MCF2-210ENST00000536274 TMEM2Q9UHN6 1383 aa4.71□□□□□ -1.66
MCF2-210ENST00000536274 TNNT2P45379 298 aaPredicted RBP4.7□□□□□ -1.66
MCF2-210ENST00000536274 IRX3P78415 501 aaPredicted RBP4.7□□□□□ -1.66
MCF2-210ENST00000536274 ZNF710Q8N1W2 664 aa4.7□□□□□ -1.66
MCF2-210ENST00000536274 RRBP1Q9P2E9 1410 aaKnown RBP4.7□□□□□ -1.66
MCF2-210ENST00000536274 VGFO15240 615 aaPredicted RBP4.7□□□□□ -1.66
MCF2-210ENST00000536274 CEBPAP49715 358 aaPredicted RBP4.7□□□□□ -1.66
MCF2-210ENST00000536274 EIF4G2P78344 907 aaKnown RBP eCLIP4.7□□□□□ -1.66
MCF2-210ENST00000536274 ZSCAN30Q86W11 494 aa4.7□□□□□ -1.66
MCF2-210ENST00000536274 KNDC1Q76NI1 1749 aa4.7□□□□□ -1.66
MCF2-210ENST00000536274 SPATA31A6Q5VVP1 1343 aa4.7□□□□□ -1.66
MCF2-210ENST00000536274 NCKAP5LQ9HCH0 1330 aa4.7□□□□□ -1.66
MCF2-210ENST00000536274 ZNF771Q7L3S4 317 aaPredicted RBP4.7□□□□□ -1.66
MCF2-210ENST00000536274 C17orf53Q8N3J3 647 aaPredicted RBP4.7□□□□□ -1.66
MCF2-210ENST00000536274 TMX1Q9H3N1 280 aa4.7□□□□□ -1.66
MCF2-210ENST00000536274 U2AF2P26368 475 aaKnown RBP eCLIP4.69□□□□□ -1.66
MCF2-210ENST00000536274 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.69□□□□□ -1.66
MCF2-210ENST00000536274 WWC1Q8IX03 1113 aa4.69□□□□□ -1.66
MCF2-210ENST00000536274 PNISRQ8TF01 805 aaKnown RBP4.69□□□□□ -1.66
MCF2-210ENST00000536274 JCADQ9P266 1359 aa4.69□□□□□ -1.66
MCF2-210ENST00000536274 TRIM6-TRIM34B2RNG4 842 aa4.69□□□□□ -1.66
MCF2-210ENST00000536274 SOX12O15370 315 aa4.69□□□□□ -1.66
MCF2-210ENST00000536274 TMED8Q6PL24 325 aaPredicted RBP4.69□□□□□ -1.66
MCF2-210ENST00000536274 TRIM34Q9BYJ4 488 aa4.69□□□□□ -1.66
MCF2-210ENST00000536274 KIF7Q2M1P5 1343 aa4.69□□□□□ -1.66
MCF2-210ENST00000536274 KDM2BQ8NHM5 1336 aa4.69□□□□□ -1.66
MCF2-210ENST00000536274 KANK1Q14678 1352 aa4.69□□□□□ -1.66
MCF2-210ENST00000536274 CCDC7Q96M83 1385 aa4.69□□□□□ -1.66
MCF2-210ENST00000536274 SIPA1L2Q9P2F8 1722 aaPredicted RBP4.69□□□□□ -1.66
MCF2-210ENST00000536274 ZNF326Q5BKZ1 582 aaKnown RBP4.69□□□□□ -1.66
MCF2-210ENST00000536274 KTN1Q86UP2 1357 aaKnown RBP4.68□□□□□ -1.66
MCF2-210ENST00000536274 BRPF1P55201 1214 aaPredicted RBP4.68□□□□□ -1.66
MCF2-210ENST00000536274 C3orf67Q6ZVT6 689 aa4.68□□□□□ -1.66
MCF2-210ENST00000536274 MAP7D2Q96T17 732 aa4.68□□□□□ -1.66
MCF2-210ENST00000536274 ERICH4A6NGS2 130 aa4.68□□□□□ -1.66
MCF2-210ENST00000536274 IGHDP01880 384 aa4.68□□□□□ -1.66
MCF2-210ENST00000536274 CHGAP10645 457 aaKnown RBP4.68□□□□□ -1.66
MCF2-210ENST00000536274 NASPP49321 788 aaPredicted RBP4.68□□□□□ -1.66
MCF2-210ENST00000536274 ROCK1Q13464 1354 aa4.68□□□□□ -1.66
MCF2-210ENST00000536274 NRXN3Q9Y4C0 1643 aa4.68□□□□□ -1.66
MCF2-210ENST00000536274 RIOK3O14730 519 aaKnown RBP4.67□□□□□ -1.66
MCF2-210ENST00000536274 KCNA6P17658 529 aa4.67□□□□□ -1.66
MCF2-210ENST00000536274 BECN1Q14457 450 aa4.67□□□□□ -1.66
MCF2-210ENST00000536274 KIF1AQ12756 1690 aa4.67□□□□□ -1.66
MCF2-210ENST00000536274 DAPK1P53355 1430 aa4.67□□□□□ -1.66
MCF2-210ENST00000536274 CAPN2P17655 700 aa4.67□□□□□ -1.66
MCF2-210ENST00000536274 NCLP19338 710 aaKnown RBP4.67□□□□□ -1.66
MCF2-210ENST00000536274 HSPA1LP34931 641 aa4.67□□□□□ -1.66
MCF2-210ENST00000536274 LOC102724159A0A0B4J2E5 919 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms