RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 NRXN3Q9Y4C0 1643 aa17.53■□□□□ 0.4
LIG1-203ENST00000536218 DLC1Q96QB1 1528 aa17.53■□□□□ 0.4
LIG1-203ENST00000536218 TRIM35Q9UPQ4 493 aa17.53■□□□□ 0.4
LIG1-203ENST00000536218 AMOTL2Q9Y2J4 779 aa17.53■□□□□ 0.4
LIG1-203ENST00000536218 CCDC27Q2M243 656 aa17.52■□□□□ 0.4
LIG1-203ENST00000536218 TBC1D2Q9BYX2 928 aa17.52■□□□□ 0.4
LIG1-203ENST00000536218 UPF2Q9HAU5 1272 aaKnown RBP17.52■□□□□ 0.4
LIG1-203ENST00000536218 IQSEC2Q5JU85 1478 aa17.52■□□□□ 0.4
LIG1-203ENST00000536218 PMFBP1Q8TBY8 1022 aa17.52■□□□□ 0.39
LIG1-203ENST00000536218 EXOSC9Q06265 439 aaKnown RBP17.51■□□□□ 0.39
LIG1-203ENST00000536218 ADAMTS13Q76LX8 1427 aa17.51■□□□□ 0.39
LIG1-203ENST00000536218 BCL11BQ9C0K0 894 aaPredicted RBP17.51■□□□□ 0.39
LIG1-203ENST00000536218 SETD1AO15047 1707 aaKnown RBP17.5■□□□□ 0.39
LIG1-203ENST00000536218 PHACTR3Q96KR7 559 aa17.5■□□□□ 0.39
LIG1-203ENST00000536218 THUMPD2Q9BTF0 503 aaKnown RBP17.49■□□□□ 0.39
LIG1-203ENST00000536218 R3HCC1Q9Y3T6 440 aaKnown RBP17.49■□□□□ 0.39
LIG1-203ENST00000536218 ACEP12821 1306 aa17.49■□□□□ 0.39
LIG1-203ENST00000536218 ATP7BP35670 1465 aa17.49■□□□□ 0.39
LIG1-203ENST00000536218 RLBP1P12271 317 aa17.48■□□□□ 0.39
LIG1-203ENST00000536218 THEMISQ8N1K5 641 aaPredicted RBP17.48■□□□□ 0.39
LIG1-203ENST00000536218 SIRT1Q96EB6 747 aa17.48■□□□□ 0.39
LIG1-203ENST00000536218 BBXQ8WY36 941 aaPredicted RBP17.48■□□□□ 0.39
LIG1-203ENST00000536218 FCHSD2O94868 740 aa17.48■□□□□ 0.39
LIG1-203ENST00000536218 CPSF1Q10570 1443 aaKnown RBP17.48■□□□□ 0.39
LIG1-203ENST00000536218 PDE3AQ14432 1141 aa17.48■□□□□ 0.39
LIG1-203ENST00000536218 FAM135BQ49AJ0 1406 aa17.48■□□□□ 0.39
LIG1-203ENST00000536218 EDC4Q6P2E9 1401 aaKnown RBP17.48■□□□□ 0.39
LIG1-203ENST00000536218 COL3A1P02461 1466 aaPredicted RBP17.47■□□□□ 0.39
LIG1-203ENST00000536218 MED14O60244 1454 aa17.47■□□□□ 0.39
LIG1-203ENST00000536218 ZNF692Q9BU19 519 aaPredicted RBP17.47■□□□□ 0.39
LIG1-203ENST00000536218 PLEKHG1Q9ULL1 1385 aa17.47■□□□□ 0.39
LIG1-203ENST00000536218 UBR1Q8IWV7 1749 aa17.47■□□□□ 0.39
LIG1-203ENST00000536218 IGHDP01880 384 aa17.46■□□□□ 0.39
LIG1-203ENST00000536218 SMC4Q9NTJ3 1288 aa17.46■□□□□ 0.39
LIG1-203ENST00000536218 PNPLA6Q8IY17 1366 aa17.46■□□□□ 0.39
LIG1-203ENST00000536218 RBM33Q96EV2 1170 aaKnown RBP17.46■□□□□ 0.39
LIG1-203ENST00000536218 MSNP26038 577 aaKnown RBP17.46■□□□□ 0.39
LIG1-203ENST00000536218 CPS1P31327 1500 aa17.45■□□□□ 0.38
LIG1-203ENST00000536218 PTPRUQ92729 1446 aa17.44■□□□□ 0.38
LIG1-203ENST00000536218 IL13P35225 146 aa17.44■□□□□ 0.38
LIG1-203ENST00000536218 GAS2L3Q86XJ1 694 aa17.44■□□□□ 0.38
LIG1-203ENST00000536218 TTC21BQ7Z4L5 1316 aa17.44■□□□□ 0.38
LIG1-203ENST00000536218 TECPR2O15040 1411 aa17.44■□□□□ 0.38
LIG1-203ENST00000536218 NGDNQ8NEJ9 315 aaKnown RBP17.44■□□□□ 0.38
LIG1-203ENST00000536218 CHMP5Q9NZZ3 219 aa17.44■□□□□ 0.38
LIG1-203ENST00000536218 ELL2O00472 640 aaPredicted RBP17.43■□□□□ 0.38
LIG1-203ENST00000536218 FTSJ3Q8IY81 847 aaKnown RBP17.43■□□□□ 0.38
LIG1-203ENST00000536218 MAP7D2Q96T17 732 aa17.43■□□□□ 0.38
LIG1-203ENST00000536218 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.42■□□□□ 0.38
LIG1-203ENST00000536218 SSH1Q8WYL5 1049 aa17.42■□□□□ 0.38
LIG1-203ENST00000536218 OFD1O75665 1012 aa17.42■□□□□ 0.38
LIG1-203ENST00000536218 TBX22Q9Y458 520 aa17.42■□□□□ 0.38
LIG1-203ENST00000536218 SMAP1Q8IYB5 467 aaPredicted RBP17.42■□□□□ 0.38
LIG1-203ENST00000536218 NUTM2GQ5VZR2 741 aa17.41■□□□□ 0.38
LIG1-203ENST00000536218 ZSCAN30Q86W11 494 aa17.41■□□□□ 0.38
LIG1-203ENST00000536218 ANP32BQ92688 251 aaKnown RBP17.41■□□□□ 0.38
LIG1-203ENST00000536218 KIF20BQ96Q89 1820 aa17.41■□□□□ 0.38
LIG1-203ENST00000536218 KCNA6P17658 529 aa17.4■□□□□ 0.38
LIG1-203ENST00000536218 ZKSCAN2Q63HK3 967 aa17.4■□□□□ 0.38
LIG1-203ENST00000536218 DDX11L8A8MPP1 907 aa17.4■□□□□ 0.38
LIG1-203ENST00000536218 DCTN1Q14203 1278 aa17.4■□□□□ 0.38
LIG1-203ENST00000536218 NFE2L2Q16236 605 aa17.4■□□□□ 0.38
LIG1-203ENST00000536218 AEBP1Q8IUX7 1158 aa17.4■□□□□ 0.38
LIG1-203ENST00000536218 MAP2P11137 1827 aaKnown RBP17.4■□□□□ 0.38
LIG1-203ENST00000536218 FAM83GA6ND36 823 aa17.4■□□□□ 0.38
LIG1-203ENST00000536218 UQCRHLA0A096LP55 91 aa17.39■□□□□ 0.37
LIG1-203ENST00000536218 UQCRHP07919 91 aa17.39■□□□□ 0.37
LIG1-203ENST00000536218 HSP90AB2PQ58FF8 381 aa17.39■□□□□ 0.37
LIG1-203ENST00000536218 PCDHB15Q9Y5E8 787 aa17.39■□□□□ 0.37
LIG1-203ENST00000536218 ANKRD26Q9UPS8 1709 aa17.39■□□□□ 0.37
LIG1-203ENST00000536218 SULT6B1Q6IMI4 303 aa17.38■□□□□ 0.37
LIG1-203ENST00000536218 TBC1D32Q96NH3 1257 aa17.38■□□□□ 0.37
LIG1-203ENST00000536218 NOB1Q9ULX3 412 aaKnown RBP17.38■□□□□ 0.37
LIG1-203ENST00000536218 PLEKHG3A1L390 1219 aa17.38■□□□□ 0.37
LIG1-203ENST00000536218 NCBP3Q53F19 620 aaKnown RBP17.38■□□□□ 0.37
LIG1-203ENST00000536218 DZIP1LQ8IYY4 767 aaKnown RBP17.38■□□□□ 0.37
LIG1-203ENST00000536218 PDIA4P13667 645 aaKnown RBP17.38■□□□□ 0.37
LIG1-203ENST00000536218 ADGRB2O60241 1585 aa17.37■□□□□ 0.37
LIG1-203ENST00000536218 CDC42BPGQ6DT37 1551 aa17.37■□□□□ 0.37
LIG1-203ENST00000536218 C3P01024 1663 aa17.37■□□□□ 0.37
LIG1-203ENST00000536218 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.37■□□□□ 0.37
LIG1-203ENST00000536218 C14orf37Q86TY3 774 aa17.37■□□□□ 0.37
LIG1-203ENST00000536218 LRRC7Q96NW7 1537 aa17.36■□□□□ 0.37
LIG1-203ENST00000536218 EIF4A2Q14240 407 aaKnown RBP17.36■□□□□ 0.37
LIG1-203ENST00000536218 ITPRIPQ8IWB1 547 aa17.36■□□□□ 0.37
LIG1-203ENST00000536218 ISY1Q9ULR0 285 aaKnown RBP17.36■□□□□ 0.37
LIG1-203ENST00000536218 TRIM27P14373 513 aa17.36■□□□□ 0.37
LIG1-203ENST00000536218 NASPP49321 788 aaPredicted RBP17.35■□□□□ 0.37
LIG1-203ENST00000536218 IL16Q14005 1332 aa17.35■□□□□ 0.37
LIG1-203ENST00000536218 AATKQ6ZMQ8 1374 aa17.35■□□□□ 0.37
LIG1-203ENST00000536218 XPCQ01831 940 aaPredicted RBP17.34■□□□□ 0.37
LIG1-203ENST00000536218 CCDC173Q0VFZ6 552 aa17.34■□□□□ 0.37
LIG1-203ENST00000536218 MVPQ14764 893 aaKnown RBP17.34■□□□□ 0.37
LIG1-203ENST00000536218 TSPYL6Q8N831 410 aa17.34■□□□□ 0.37
LIG1-203ENST00000536218 CHMP4BQ9H444 224 aaKnown RBP17.34■□□□□ 0.37
LIG1-203ENST00000536218 ZBTB7CA1YPR0 619 aa17.34■□□□□ 0.37
LIG1-203ENST00000536218 FER1L4A9Z1Z3 1794 aa17.33■□□□□ 0.36
LIG1-203ENST00000536218 NLRP6P59044 892 aa17.33■□□□□ 0.36
LIG1-203ENST00000536218 ATF7IPQ6VMQ6 1270 aa17.33■□□□□ 0.36
LIG1-203ENST00000536218 USP6P35125 1406 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms