RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 PLXNC1O60486 1568 aa6.09□□□□□ -1.43
CD44-226ENST00000527889 SHANK2Q9UPX8 1470 aa6.09□□□□□ -1.44
CD44-226ENST00000527889 AKNAQ7Z591 1439 aa6.08□□□□□ -1.44
CD44-226ENST00000527889 KIDINS220Q9ULH0 1771 aa6.08□□□□□ -1.44
CD44-226ENST00000527889 DIXDC1Q155Q3 683 aa6.08□□□□□ -1.44
CD44-226ENST00000527889 AEBP1Q8IUX7 1158 aa6.08□□□□□ -1.44
CD44-226ENST00000527889 MTMR14Q8NCE2 650 aa6.08□□□□□ -1.44
CD44-226ENST00000527889 ARHGEF12Q9NZN5 1544 aa6.08□□□□□ -1.44
CD44-226ENST00000527889 ADGRL2O95490 1459 aa6.08□□□□□ -1.44
CD44-226ENST00000527889 CCDC141Q6ZP82 1450 aa6.08□□□□□ -1.44
CD44-226ENST00000527889 MBD5Q9P267 1494 aa6.08□□□□□ -1.44
CD44-226ENST00000527889 PLCH2O75038 1416 aa6.08□□□□□ -1.44
CD44-226ENST00000527889 C9orf84Q5VXU9 1444 aa6.08□□□□□ -1.44
CD44-226ENST00000527889 INO80Q9ULG1 1556 aaPredicted RBP6.07□□□□□ -1.44
CD44-226ENST00000527889 BCAMP50895 628 aa6.07□□□□□ -1.44
CD44-226ENST00000527889 HNRNPMP52272 730 aaKnown RBP eCLIP6.07□□□□□ -1.44
CD44-226ENST00000527889 THSD4Q6ZMP0 1018 aa6.07□□□□□ -1.44
CD44-226ENST00000527889 STAC3Q96MF2 364 aa6.07□□□□□ -1.44
CD44-226ENST00000527889 CEP152O94986 1710 aa6.07□□□□□ -1.44
CD44-226ENST00000527889 PLEKHH2Q8IVE3 1493 aa6.07□□□□□ -1.44
CD44-226ENST00000527889 GLI2P10070 1586 aa6.06□□□□□ -1.44
CD44-226ENST00000527889 ZEB1P37275 1124 aaPredicted RBP6.06□□□□□ -1.44
CD44-226ENST00000527889 IRF5Q13568 498 aa6.06□□□□□ -1.44
CD44-226ENST00000527889 TUSC1Q2TAM9 212 aa6.06□□□□□ -1.44
CD44-226ENST00000527889 RIC3Q7Z5B4 369 aa6.06□□□□□ -1.44
CD44-226ENST00000527889 WNT2BQ93097 391 aa6.06□□□□□ -1.44
CD44-226ENST00000527889 GDPD2Q9HCC8 539 aa6.06□□□□□ -1.44
CD44-226ENST00000527889 FANCAO15360 1455 aa6.06□□□□□ -1.44
CD44-226ENST00000527889 ROCK1Q13464 1354 aa6.06□□□□□ -1.44
CD44-226ENST00000527889 ZFYVE16Q7Z3T8 1539 aa6.05□□□□□ -1.44
CD44-226ENST00000527889 RCCD1A6NED2 376 aa6.05□□□□□ -1.44
CD44-226ENST00000527889 GOLGA8CPA6NN73 597 aa6.05□□□□□ -1.44
CD44-226ENST00000527889 PPP1R15AO75807 674 aaPredicted RBP6.05□□□□□ -1.44
CD44-226ENST00000527889 HSPA1LP34931 641 aa6.05□□□□□ -1.44
CD44-226ENST00000527889 SAMD7Q7Z3H4 446 aa6.05□□□□□ -1.44
CD44-226ENST00000527889 ANKK1Q8NFD2 765 aa6.05□□□□□ -1.44
CD44-226ENST00000527889 SPIRE2Q8WWL2 714 aa6.05□□□□□ -1.44
CD44-226ENST00000527889 RGS17Q9UGC6 210 aaPredicted RBP6.05□□□□□ -1.44
CD44-226ENST00000527889 NCOA1Q15788 1441 aa6.05□□□□□ -1.44
CD44-226ENST00000527889 UNC13BO14795 1591 aa6.05□□□□□ -1.44
CD44-226ENST00000527889 SOWAHBA6NEL2 793 aa6.04□□□□□ -1.44
CD44-226ENST00000527889 SPTLC1O15269 473 aa6.04□□□□□ -1.44
CD44-226ENST00000527889 EFCAB2Q5VUJ9 269 aa6.04□□□□□ -1.44
CD44-226ENST00000527889 RBM46Q8TBY0 533 aaKnown RBP6.04□□□□□ -1.44
CD44-226ENST00000527889 CD109Q6YHK3 1445 aa6.04□□□□□ -1.44
CD44-226ENST00000527889 KIAA1107Q9UPP5 1409 aa6.04□□□□□ -1.44
CD44-226ENST00000527889 TRAPPC8Q9Y2L5 1435 aa6.04□□□□□ -1.44
CD44-226ENST00000527889 ANKRD30AQ9BXX3 1397 aa6.04□□□□□ -1.44
CD44-226ENST00000527889 ATP7AQ04656 1500 aa6.04□□□□□ -1.44
CD44-226ENST00000527889 DEPDC5O75140 1603 aa6.03□□□□□ -1.44
CD44-226ENST00000527889 ABCA6Q8N139 1617 aa6.03□□□□□ -1.44
CD44-226ENST00000527889 POM121CA8CG34 1229 aa6.03□□□□□ -1.44
CD44-226ENST00000527889 UBAP1LF5GYI3 381 aa6.03□□□□□ -1.44
CD44-226ENST00000527889 SWT1Q5T5J6 900 aaKnown RBP6.03□□□□□ -1.44
CD44-226ENST00000527889 RSBN1LQ6PCB5 846 aaPredicted RBP6.03□□□□□ -1.44
CD44-226ENST00000527889 RGS22Q8NE09 1264 aa6.03□□□□□ -1.44
CD44-226ENST00000527889 CALR3Q96L12 384 aaKnown RBP6.03□□□□□ -1.44
CD44-226ENST00000527889 KIF15Q9NS87 1388 aa6.03□□□□□ -1.44
CD44-226ENST00000527889 IQGAP3Q86VI3 1631 aa6.03□□□□□ -1.44
CD44-226ENST00000527889 LTBP4Q8N2S1 1624 aa6.03□□□□□ -1.44
CD44-226ENST00000527889 DENND4BO75064 1496 aaPredicted RBP6.02□□□□□ -1.44
CD44-226ENST00000527889 SPHKAPQ2M3C7 1700 aa6.02□□□□□ -1.45
CD44-226ENST00000527889 KDM5CP41229 1560 aa6.02□□□□□ -1.45
CD44-226ENST00000527889 FRMPD1Q5SYB0 1578 aa6.02□□□□□ -1.45
CD44-226ENST00000527889 MYO5BQ9ULV0 1848 aa6.02□□□□□ -1.45
CD44-226ENST00000527889 E9PCH4 1651 aa6.02□□□□□ -1.45
CD44-226ENST00000527889 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.02□□□□□ -1.45
CD44-226ENST00000527889 CD46P15529 392 aa6.02□□□□□ -1.45
CD44-226ENST00000527889 DNAJB2P25686 324 aa6.02□□□□□ -1.45
CD44-226ENST00000527889 ABL2P42684 1182 aa6.02□□□□□ -1.45
CD44-226ENST00000527889 PTPN5P54829 565 aa6.02□□□□□ -1.45
CD44-226ENST00000527889 WWC1Q8IX03 1113 aa6.02□□□□□ -1.45
CD44-226ENST00000527889 GLMNQ92990 594 aa6.02□□□□□ -1.45
CD44-226ENST00000527889 TRIM52Q96A61 297 aa6.02□□□□□ -1.45
CD44-226ENST00000527889 LRCH3Q96II8 777 aa6.02□□□□□ -1.45
CD44-226ENST00000527889 GZF1Q9H116 711 aaPredicted RBP6.02□□□□□ -1.45
CD44-226ENST00000527889 TMEM134Q9H6X4 195 aa6.02□□□□□ -1.45
CD44-226ENST00000527889 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.02□□□□□ -1.45
CD44-226ENST00000527889 TBC1D2BQ9UPU7 963 aa6.02□□□□□ -1.45
CD44-226ENST00000527889 DUOX2Q9NRD8 1548 aa6.02□□□□□ -1.45
CD44-226ENST00000527889 EIF2AK4Q9P2K8 1649 aaKnown RBP6.02□□□□□ -1.45
CD44-226ENST00000527889 PZPP20742 1482 aa6.02□□□□□ -1.45
CD44-226ENST00000527889 KIF1BO60333 1816 aa6.02□□□□□ -1.45
CD44-226ENST00000527889 SCAPERQ9BY12 1400 aa6.01□□□□□ -1.45
CD44-226ENST00000527889 ANKRD50Q9ULJ7 1429 aa6.01□□□□□ -1.45
CD44-226ENST00000527889 KDM5DQ9BY66 1539 aa6.01□□□□□ -1.45
CD44-226ENST00000527889 LILRB3O75022 631 aa6.01□□□□□ -1.45
CD44-226ENST00000527889 TSPY4P0CV99 314 aa6.01□□□□□ -1.45
CD44-226ENST00000527889 TSPY10P0CW01 314 aa6.01□□□□□ -1.45
CD44-226ENST00000527889 TMCO4Q5TGY1 634 aa6.01□□□□□ -1.45
CD44-226ENST00000527889 WBP1LQ9NX94 342 aa6.01□□□□□ -1.45
CD44-226ENST00000527889 BCORL1Q5H9F3 1711 aa6□□□□□ -1.45
CD44-226ENST00000527889 SIGLEC1Q9BZZ2 1709 aa6□□□□□ -1.45
CD44-226ENST00000527889 MOXD2PA6NHM9 499 aa6□□□□□ -1.45
CD44-226ENST00000527889 GJA5P36382 358 aa6□□□□□ -1.45
CD44-226ENST00000527889 QPCTQ16769 361 aa6□□□□□ -1.45
CD44-226ENST00000527889 HPS5Q9UPZ3 1129 aa6□□□□□ -1.45
CD44-226ENST00000527889 NEO1Q92859 1461 aa6□□□□□ -1.45
CD44-226ENST00000527889 TET3O43151 1660 aa6□□□□□ -1.45
CD44-226ENST00000527889 CLSPNQ9HAW4 1339 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 112.4 ms