RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 USP6P35125 1406 aa20.81■□□□□ 0.92
PRPF40A-211ENST00000493468 PTGER2P43116 358 aa20.81■□□□□ 0.92
PRPF40A-211ENST00000493468 CDCA7Q9BWT1 371 aaPredicted RBP20.81■□□□□ 0.92
PRPF40A-211ENST00000493468 PROM2Q8N271 834 aa20.8■□□□□ 0.92
PRPF40A-211ENST00000493468 ZNF784Q8NCA9 323 aaPredicted RBP20.8■□□□□ 0.92
PRPF40A-211ENST00000493468 WDR17Q8IZU2 1322 aa20.79■□□□□ 0.92
PRPF40A-211ENST00000493468 PDGFDQ9GZP0 370 aaPredicted RBP20.79■□□□□ 0.92
PRPF40A-211ENST00000493468 RGPD5Q99666 1765 aa20.78■□□□□ 0.92
PRPF40A-211ENST00000493468 TOM1L2Q6ZVM7 507 aa20.78■□□□□ 0.92
PRPF40A-211ENST00000493468 PTF1AQ7RTS3 328 aa20.78■□□□□ 0.92
PRPF40A-211ENST00000493468 CPSF1Q10570 1443 aaKnown RBP20.78■□□□□ 0.92
PRPF40A-211ENST00000493468 ZBTB7AO95365 584 aa20.77■□□□□ 0.92
PRPF40A-211ENST00000493468 SRPK2P78362 688 aaKnown RBP20.77■□□□□ 0.92
PRPF40A-211ENST00000493468 MARCH10Q8NA82 808 aaPredicted RBP20.77■□□□□ 0.92
PRPF40A-211ENST00000493468 NLRP6P59044 892 aa20.76■□□□□ 0.91
PRPF40A-211ENST00000493468 NHSQ6T4R5 1651 aa20.76■□□□□ 0.91
PRPF40A-211ENST00000493468 TRPM1Q7Z4N2 1603 aa20.75■□□□□ 0.91
PRPF40A-211ENST00000493468 ABCC6O95255 1503 aa20.75■□□□□ 0.91
PRPF40A-211ENST00000493468 STK32BQ9NY57 414 aa20.75■□□□□ 0.91
PRPF40A-211ENST00000493468 CENPJQ9HC77 1338 aaPredicted RBP20.75■□□□□ 0.91
PRPF40A-211ENST00000493468 SLC15A2Q16348 729 aa20.74■□□□□ 0.91
PRPF40A-211ENST00000493468 TXNRD1Q16881 649 aa20.74■□□□□ 0.91
PRPF40A-211ENST00000493468 SYT17Q9BSW7 474 aa20.74■□□□□ 0.91
PRPF40A-211ENST00000493468 PAPPAQ13219 1627 aa20.74■□□□□ 0.91
PRPF40A-211ENST00000493468 ZBTB7CA1YPR0 619 aa20.73■□□□□ 0.91
PRPF40A-211ENST00000493468 SGIP1Q9BQI5 828 aa20.73■□□□□ 0.91
PRPF40A-211ENST00000493468 FHDC1Q9C0D6 1143 aaPredicted RBP20.73■□□□□ 0.91
PRPF40A-211ENST00000493468 MTFR1LQ9H019 292 aa20.73■□□□□ 0.91
PRPF40A-211ENST00000493468 CABP2Q9NPB3 220 aa20.73■□□□□ 0.91
PRPF40A-211ENST00000493468 AXIN2Q9Y2T1 843 aa20.73■□□□□ 0.91
PRPF40A-211ENST00000493468 MAP3K5Q99683 1374 aa20.72■□□□□ 0.91
PRPF40A-211ENST00000493468 CARD10Q9BWT7 1032 aa20.72■□□□□ 0.91
PRPF40A-211ENST00000493468 ATF5Q9Y2D1 282 aaPredicted RBP20.72■□□□□ 0.91
PRPF40A-211ENST00000493468 TNS2Q63HR2 1409 aa20.71■□□□□ 0.91
PRPF40A-211ENST00000493468 NBPF1Q3BBV0 1214 aa20.7■□□□□ 0.9
PRPF40A-211ENST00000493468 ARHGEF25Q86VW2 580 aa20.7■□□□□ 0.9
PRPF40A-211ENST00000493468 CABP1Q9NZU7 370 aa20.7■□□□□ 0.9
PRPF40A-211ENST00000493468 CCDC7Q96M83 1385 aa20.7■□□□□ 0.9
PRPF40A-211ENST00000493468 NFAT5O94916 1531 aa20.69■□□□□ 0.9
PRPF40A-211ENST00000493468 KCNH5Q8NCM2 988 aa20.69■□□□□ 0.9
PRPF40A-211ENST00000493468 EXOC5O00471 708 aa20.67■□□□□ 0.9
PRPF40A-211ENST00000493468 QSER1Q2KHR3 1735 aa20.67■□□□□ 0.9
PRPF40A-211ENST00000493468 C1QTNF8P60827 252 aa20.66■□□□□ 0.9
PRPF40A-211ENST00000493468 COL24A1Q17RW2 1714 aa20.66■□□□□ 0.9
PRPF40A-211ENST00000493468 BTAF1O14981 1849 aa20.66■□□□□ 0.9
PRPF40A-211ENST00000493468 SENP3-EIF4A1A0A087X0R7 540 aa20.65■□□□□ 0.9
PRPF40A-211ENST00000493468 USP54Q70EL1 1684 aa20.64■□□□□ 0.9
PRPF40A-211ENST00000493468 TTC21AQ8NDW8 1320 aa20.64■□□□□ 0.89
PRPF40A-211ENST00000493468 CSB-PGBD3P0DP91 1061 aa20.64■□□□□ 0.89
PRPF40A-211ENST00000493468 ARXQ96QS3 562 aa20.64■□□□□ 0.89
PRPF40A-211ENST00000493468 TTC21BQ7Z4L5 1316 aa20.63■□□□□ 0.89
PRPF40A-211ENST00000493468 ZNF692Q9BU19 519 aaPredicted RBP20.63■□□□□ 0.89
PRPF40A-211ENST00000493468 EVC2Q86UK5 1308 aa20.62■□□□□ 0.89
PRPF40A-211ENST00000493468 MON2Q7Z3U7 1717 aa20.61■□□□□ 0.89
PRPF40A-211ENST00000493468 LTN1O94822 1766 aa20.58■□□□□ 0.89
PRPF40A-211ENST00000493468 ERBB3P21860 1342 aa20.56■□□□□ 0.88
PRPF40A-211ENST00000493468 KAT6BQ8WYB5 2073 aa20.56■□□□□ 0.88
PRPF40A-211ENST00000493468 TUBGCP6Q96RT7 1819 aa20.55■□□□□ 0.88
PRPF40A-211ENST00000493468 SOX12O15370 315 aa20.55■□□□□ 0.88
PRPF40A-211ENST00000493468 ZNF827Q17R98 1081 aa20.55■□□□□ 0.88
PRPF40A-211ENST00000493468 SLC16A10Q8TF71 515 aa20.55■□□□□ 0.88
PRPF40A-211ENST00000493468 GOLGB1Q14789 3259 aaKnown RBP20.55■□□□□ 0.88
PRPF40A-211ENST00000493468 ACSBG1Q96GR2 724 aa20.54■□□□□ 0.88
PRPF40A-211ENST00000493468 USP31Q70CQ4 1352 aa20.54■□□□□ 0.88
PRPF40A-211ENST00000493468 SHANK3Q9BYB0 1731 aa20.53■□□□□ 0.88
PRPF40A-211ENST00000493468 IL2RBP14784 551 aa20.53■□□□□ 0.88
PRPF40A-211ENST00000493468 GPR162Q16538 588 aa20.53■□□□□ 0.88
PRPF40A-211ENST00000493468 KTN1Q86UP2 1357 aaKnown RBP20.53■□□□□ 0.88
PRPF40A-211ENST00000493468 FAM208AQ9UK61 1670 aaKnown RBP20.52■□□□□ 0.88
PRPF40A-211ENST00000493468 GIGYF1O75420 1035 aaPredicted RBP20.52■□□□□ 0.88
PRPF40A-211ENST00000493468 LRRC4BQ9NT99 713 aa20.52■□□□□ 0.88
PRPF40A-211ENST00000493468 SLC27A3Q5K4L6 730 aa20.51■□□□□ 0.87
PRPF40A-211ENST00000493468 IFFO2Q5TF58 517 aa20.51■□□□□ 0.87
PRPF40A-211ENST00000493468 AKT1S1Q96B36 256 aa20.51■□□□□ 0.87
PRPF40A-211ENST00000493468 LY75O60449 1722 aa20.5■□□□□ 0.87
PRPF40A-211ENST00000493468 CEP350Q5VT06 3117 aa20.49■□□□□ 0.87
PRPF40A-211ENST00000493468 POLD1P28340 1107 aa20.49■□□□□ 0.87
PRPF40A-211ENST00000493468 NLRP2Q9NX02 1062 aa20.49■□□□□ 0.87
PRPF40A-211ENST00000493468 PNPLA7Q6ZV29 1317 aa20.47■□□□□ 0.87
PRPF40A-211ENST00000493468 SBNO2Q9Y2G9 1366 aa20.46■□□□□ 0.87
PRPF40A-211ENST00000493468 CD163L1Q9NR16 1453 aa20.45■□□□□ 0.86
PRPF40A-211ENST00000493468 DOT1LQ8TEK3 1739 aa20.45■□□□□ 0.86
PRPF40A-211ENST00000493468 ANKRD24Q8TF21 1146 aa20.44■□□□□ 0.86
PRPF40A-211ENST00000493468 ROCK2O75116 1388 aaKnown RBP20.43■□□□□ 0.86
PRPF40A-211ENST00000493468 KLHL34Q8N239 644 aa20.42■□□□□ 0.86
PRPF40A-211ENST00000493468 L3MBTL2Q969R5 705 aa20.42■□□□□ 0.86
PRPF40A-211ENST00000493468 GRIN3BO60391 1043 aa20.41■□□□□ 0.86
PRPF40A-211ENST00000493468 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.41■□□□□ 0.86
PRPF40A-211ENST00000493468 NLGN2Q8NFZ4 835 aa20.41■□□□□ 0.86
PRPF40A-211ENST00000493468 EDC4Q6P2E9 1401 aaKnown RBP20.4■□□□□ 0.86
PRPF40A-211ENST00000493468 NME9Q86XW9 330 aa20.4■□□□□ 0.86
PRPF40A-211ENST00000493468 PELP1Q8IZL8 1130 aaKnown RBP20.4■□□□□ 0.86
PRPF40A-211ENST00000493468 ANKRD36BQ8N2N9 1353 aa20.4■□□□□ 0.86
PRPF40A-211ENST00000493468 TFCP2L1Q9NZI6 479 aa20.4■□□□□ 0.86
PRPF40A-211ENST00000493468 NSD2O96028 1365 aa20.38■□□□□ 0.85
PRPF40A-211ENST00000493468 YBX3P16989 372 aaKnown RBP eCLIP20.36■□□□□ 0.851e-8■■■■■ 42.6
PRPF40A-211ENST00000493468 DDX54Q8TDD1 881 aaKnown RBP20.35■□□□□ 0.85
PRPF40A-211ENST00000493468 IP6K1Q92551 441 aa20.35■□□□□ 0.85
PRPF40A-211ENST00000493468 ATP10DQ9P241 1426 aa20.35■□□□□ 0.85
PRPF40A-211ENST00000493468 HDGFL2Q7Z4V5 671 aaPredicted RBP20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 115.5 ms