RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 MINK1Q8N4C8 1332 aaPredicted RBP17.33■□□□□ 0.36
HDAC6-233ENST00000489352 ZBTB7CA1YPR0 619 aa17.33■□□□□ 0.36
HDAC6-233ENST00000489352 COL13A1Q5TAT6 717 aaPredicted RBP17.33■□□□□ 0.36
HDAC6-233ENST00000489352 C14orf93Q9H972 538 aaKnown RBP17.33■□□□□ 0.36
HDAC6-233ENST00000489352 PRR36Q9H6K5 1346 aa17.32■□□□□ 0.36
HDAC6-233ENST00000489352 TOM1L2Q6ZVM7 507 aa17.32■□□□□ 0.36
HDAC6-233ENST00000489352 NLGN2Q8NFZ4 835 aa17.32■□□□□ 0.36
HDAC6-233ENST00000489352 SLC16A10Q8TF71 515 aa17.32■□□□□ 0.36
HDAC6-233ENST00000489352 YBX3P16989 372 aaKnown RBP eCLIP17.31■□□□□ 0.36
HDAC6-233ENST00000489352 CFAP70Q5T0N1 1121 aa17.31■□□□□ 0.36
HDAC6-233ENST00000489352 ABTB2Q8N961 1025 aa17.31■□□□□ 0.36
HDAC6-233ENST00000489352 MARCH10Q8NA82 808 aaPredicted RBP17.31■□□□□ 0.36
HDAC6-233ENST00000489352 COL5A2P05997 1499 aaPredicted RBP17.31■□□□□ 0.36
HDAC6-233ENST00000489352 CPDO75976 1380 aa17.3■□□□□ 0.36
HDAC6-233ENST00000489352 WASLO00401 505 aaPredicted RBP17.3■□□□□ 0.36
HDAC6-233ENST00000489352 AATKQ6ZMQ8 1374 aa17.29■□□□□ 0.36
HDAC6-233ENST00000489352 CDCA7Q9BWT1 371 aaPredicted RBP17.29■□□□□ 0.36
HDAC6-233ENST00000489352 BCL9O00512 1426 aa17.28■□□□□ 0.36
HDAC6-233ENST00000489352 WNK3Q9BYP7 1800 aa17.27■□□□□ 0.36
HDAC6-233ENST00000489352 EXOC5O00471 708 aa17.26■□□□□ 0.35
HDAC6-233ENST00000489352 GCP02774 474 aa17.26■□□□□ 0.35
HDAC6-233ENST00000489352 NLRP13Q86W25 1043 aa17.26■□□□□ 0.35
HDAC6-233ENST00000489352 DNAJC5GQ8N7S2 189 aa17.26■□□□□ 0.35
HDAC6-233ENST00000489352 TRAK1Q9UPV9 953 aa17.26■□□□□ 0.35
HDAC6-233ENST00000489352 SPATA31E1Q6ZUB1 1445 aa17.25■□□□□ 0.35
HDAC6-233ENST00000489352 SLC34A2O95436 690 aa17.24■□□□□ 0.35
HDAC6-233ENST00000489352 NUDT16Q96DE0 195 aaKnown RBP17.24■□□□□ 0.35
HDAC6-233ENST00000489352 ZNF827Q17R98 1081 aa17.23■□□□□ 0.35
HDAC6-233ENST00000489352 QSER1Q2KHR3 1735 aa17.22■□□□□ 0.35
HDAC6-233ENST00000489352 PAPPAQ13219 1627 aa17.21■□□□□ 0.35
HDAC6-233ENST00000489352 COL24A1Q17RW2 1714 aa17.21■□□□□ 0.35
HDAC6-233ENST00000489352 ACSBG1Q96GR2 724 aa17.21■□□□□ 0.35
HDAC6-233ENST00000489352 TFCP2L1Q9NZI6 479 aa17.21■□□□□ 0.35
HDAC6-233ENST00000489352 ACEP12821 1306 aa17.21■□□□□ 0.34
HDAC6-233ENST00000489352 NHSQ6T4R5 1651 aa17.2■□□□□ 0.34
HDAC6-233ENST00000489352 ADCY9O60503 1353 aa17.19■□□□□ 0.34
HDAC6-233ENST00000489352 KIF3CO14782 793 aa17.19■□□□□ 0.34
HDAC6-233ENST00000489352 MSH5O43196 834 aa17.19■□□□□ 0.34
HDAC6-233ENST00000489352 USP19O94966 1318 aa17.19■□□□□ 0.34
HDAC6-233ENST00000489352 BRD4O60885 1362 aaPredicted RBP17.18■□□□□ 0.34
HDAC6-233ENST00000489352 TOMM70O94826 608 aa17.18■□□□□ 0.34
HDAC6-233ENST00000489352 CSB-PGBD3P0DP91 1061 aa17.18■□□□□ 0.34
HDAC6-233ENST00000489352 BTAF1O14981 1849 aa17.18■□□□□ 0.34
HDAC6-233ENST00000489352 WDR90Q96KV7 1748 aa17.18■□□□□ 0.34
HDAC6-233ENST00000489352 WDR17Q8IZU2 1322 aa17.18■□□□□ 0.34
HDAC6-233ENST00000489352 AKT1S1Q96B36 256 aa17.16■□□□□ 0.34
HDAC6-233ENST00000489352 KLRG1Q96E93 195 aa17.16■□□□□ 0.34
HDAC6-233ENST00000489352 WWC3Q9ULE0 1092 aa17.16■□□□□ 0.34
HDAC6-233ENST00000489352 PNPLA7Q6ZV29 1317 aa17.16■□□□□ 0.34
HDAC6-233ENST00000489352 PCNTO95613 3336 aa17.15■□□□□ 0.34
HDAC6-233ENST00000489352 LRRC4BQ9NT99 713 aa17.15■□□□□ 0.34
HDAC6-233ENST00000489352 PCDH10Q9P2E7 1040 aa17.15■□□□□ 0.34
HDAC6-233ENST00000489352 POLR3AO14802 1390 aaPredicted RBP17.15■□□□□ 0.34
HDAC6-233ENST00000489352 ARHGEF28Q8N1W1 1705 aaKnown RBP17.14■□□□□ 0.33
HDAC6-233ENST00000489352 SLC27A3Q5K4L6 730 aa17.14■□□□□ 0.33
HDAC6-233ENST00000489352 USP6P35125 1406 aa17.13■□□□□ 0.33
HDAC6-233ENST00000489352 RGPD5Q99666 1765 aa17.13■□□□□ 0.33
HDAC6-233ENST00000489352 TUBGCP6Q96RT7 1819 aa17.13■□□□□ 0.33
HDAC6-233ENST00000489352 JMYQ8N9B5 988 aa17.13■□□□□ 0.33
HDAC6-233ENST00000489352 CARD10Q9BWT7 1032 aa17.13■□□□□ 0.33
HDAC6-233ENST00000489352 CCDC61Q9Y6R9 512 aa17.13■□□□□ 0.33
HDAC6-233ENST00000489352 CDK19Q9BWU1 502 aa17.12■□□□□ 0.33
HDAC6-233ENST00000489352 CD2APQ9Y5K6 639 aa17.12■□□□□ 0.33
HDAC6-233ENST00000489352 NLRP6P59044 892 aa17.11■□□□□ 0.33
HDAC6-233ENST00000489352 C16orf71Q8IYS4 520 aaPredicted RBP17.1■□□□□ 0.33
HDAC6-233ENST00000489352 PLEKHG3A1L390 1219 aa17.09■□□□□ 0.33
HDAC6-233ENST00000489352 AXIN2Q9Y2T1 843 aa17.09■□□□□ 0.33
HDAC6-233ENST00000489352 TNS2Q63HR2 1409 aa17.09■□□□□ 0.33
HDAC6-233ENST00000489352 COL18A1P39060 1754 aa17.08■□□□□ 0.33
HDAC6-233ENST00000489352 HTRA3P83110 453 aa17.08■□□□□ 0.32
HDAC6-233ENST00000489352 ADGRB1O14514 1584 aa17.07■□□□□ 0.32
HDAC6-233ENST00000489352 CCDC7Q96M83 1385 aa17.07■□□□□ 0.32
HDAC6-233ENST00000489352 MSL1Q68DK7 614 aa17.06■□□□□ 0.32
HDAC6-233ENST00000489352 TRPM1Q7Z4N2 1603 aa17.04■□□□□ 0.32
HDAC6-233ENST00000489352 RBM46Q8TBY0 533 aaKnown RBP17.04■□□□□ 0.32
HDAC6-233ENST00000489352 PIK3C2AO00443 1686 aa17.04■□□□□ 0.32
HDAC6-233ENST00000489352 ABCC6O95255 1503 aa17.03■□□□□ 0.32
HDAC6-233ENST00000489352 KCNQ4P56696 695 aa17.03■□□□□ 0.32
HDAC6-233ENST00000489352 MPHOSPH9Q99550 1183 aa17.03■□□□□ 0.32
HDAC6-233ENST00000489352 PPIP5K1Q6PFW1 1433 aa17.03■□□□□ 0.32
HDAC6-233ENST00000489352 PPARGC1BQ86YN6 1023 aaKnown RBP17.02■□□□□ 0.32
HDAC6-233ENST00000489352 SLIT3O75094 1523 aa17.01■□□□□ 0.31
HDAC6-233ENST00000489352 IGSF1Q8N6C5 1336 aa17.01■□□□□ 0.31
HDAC6-233ENST00000489352 SOX12O15370 315 aa17.01■□□□□ 0.31
HDAC6-233ENST00000489352 COL23A1Q86Y22 540 aaPredicted RBP17.01■□□□□ 0.31
HDAC6-233ENST00000489352 KCNH5Q8NCM2 988 aa17.01■□□□□ 0.31
HDAC6-233ENST00000489352 SYTL4Q96C24 671 aaPredicted RBP17.01■□□□□ 0.31
HDAC6-233ENST00000489352 KDM2AQ9Y2K7 1162 aa17.01■□□□□ 0.31
HDAC6-233ENST00000489352 CPSF1Q10570 1443 aaKnown RBP17.01■□□□□ 0.31
HDAC6-233ENST00000489352 FSTL1Q12841 308 aa17■□□□□ 0.31
HDAC6-233ENST00000489352 HSPA1AP0DMV8 641 aaKnown RBP16.99■□□□□ 0.31
HDAC6-233ENST00000489352 HSPA1BP0DMV9 641 aaKnown RBP16.99■□□□□ 0.31
HDAC6-233ENST00000489352 IL2RBP14784 551 aa16.99■□□□□ 0.31
HDAC6-233ENST00000489352 SRPK2P78362 688 aaKnown RBP16.99■□□□□ 0.31
HDAC6-233ENST00000489352 NMRK2Q9NPI5 230 aa16.99■□□□□ 0.31
HDAC6-233ENST00000489352 ARHGEF25Q86VW2 580 aa16.98■□□□□ 0.31
HDAC6-233ENST00000489352 NLRP2Q9NX02 1062 aa16.98■□□□□ 0.31
HDAC6-233ENST00000489352 CCNL1Q9UK58 526 aaPredicted RBP16.97■□□□□ 0.31
HDAC6-233ENST00000489352 DDX54Q8TDD1 881 aaKnown RBP16.96■□□□□ 0.31
HDAC6-233ENST00000489352 LY75O60449 1722 aa16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms