RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 RCAN3Q9UKA8 241 aa24.87■■□□□ 1.57
SMC4-209ENST00000468653 KIF24Q5T7B8 1368 aa24.86■■□□□ 1.57
SMC4-209ENST00000468653 NPHP3Q7Z494 1330 aa24.86■■□□□ 1.57
SMC4-209ENST00000468653 TRPM3Q9HCF6 1732 aaPredicted RBP24.85■■□□□ 1.57
SMC4-209ENST00000468653 WDR63Q8IWG1 891 aa24.85■■□□□ 1.57
SMC4-209ENST00000468653 DDX17Q92841 729 aaKnown RBP24.84■■□□□ 1.57
SMC4-209ENST00000468653 HOXC9P31274 260 aa24.83■■□□□ 1.57
SMC4-209ENST00000468653 IRX6P78412 446 aaPredicted RBP24.83■■□□□ 1.57
SMC4-209ENST00000468653 TRMT2AQ8IZ69 625 aaKnown RBP24.83■■□□□ 1.57
SMC4-209ENST00000468653 SPINK5Q9NQ38 1064 aaPredicted RBP24.83■■□□□ 1.57
SMC4-209ENST00000468653 SLAIN2Q9P270 581 aa24.82■■□□□ 1.56
SMC4-209ENST00000468653 RIPK4P57078 832 aa24.82■■□□□ 1.56
SMC4-209ENST00000468653 PLEKHG5O94827 1062 aa24.81■■□□□ 1.56
SMC4-209ENST00000468653 SULT6B1Q6IMI4 303 aa24.81■■□□□ 1.56
SMC4-209ENST00000468653 BRINP3Q76B58 766 aa24.81■■□□□ 1.56
SMC4-209ENST00000468653 RNF123Q5XPI4 1314 aa24.81■■□□□ 1.56
SMC4-209ENST00000468653 PHACTR3Q96KR7 559 aa24.8■■□□□ 1.56
SMC4-209ENST00000468653 NFAT5O94916 1531 aa24.8■■□□□ 1.56
SMC4-209ENST00000468653 RTL1A6NKG5 1358 aa24.8■■□□□ 1.56
SMC4-209ENST00000468653 GCP02774 474 aa24.8■■□□□ 1.56
SMC4-209ENST00000468653 USP19O94966 1318 aa24.79■■□□□ 1.56
SMC4-209ENST00000468653 NFE2L2Q16236 605 aa24.78■■□□□ 1.56
SMC4-209ENST00000468653 TRIM35Q9UPQ4 493 aa24.78■■□□□ 1.56
SMC4-209ENST00000468653 ARHGEF10O15013 1369 aa24.78■■□□□ 1.56
SMC4-209ENST00000468653 ZBTB7CA1YPR0 619 aa24.77■■□□□ 1.56
SMC4-209ENST00000468653 AEBP1Q8IUX7 1158 aa24.77■■□□□ 1.56
SMC4-209ENST00000468653 SLIT3O75094 1523 aa24.77■■□□□ 1.56
SMC4-209ENST00000468653 IP6K1Q92551 441 aa24.77■■□□□ 1.56
SMC4-209ENST00000468653 ALS2Q96Q42 1657 aa24.76■■□□□ 1.55
SMC4-209ENST00000468653 RGPD1P0DJD0 1748 aa24.75■■□□□ 1.55
SMC4-209ENST00000468653 LTN1O94822 1766 aa24.75■■□□□ 1.55
SMC4-209ENST00000468653 LTV1Q96GA3 475 aaPredicted RBP24.75■■□□□ 1.55
SMC4-209ENST00000468653 EYA1Q99502 592 aa24.75■■□□□ 1.55
SMC4-209ENST00000468653 MYH16Q9H6N6 1097 aa24.75■■□□□ 1.55
SMC4-209ENST00000468653 PXDNQ92626 1479 aa24.74■■□□□ 1.55
SMC4-209ENST00000468653 TNS3Q68CZ2 1445 aa24.74■■□□□ 1.55
SMC4-209ENST00000468653 RRP1P56182 461 aaKnown RBP24.73■■□□□ 1.55
SMC4-209ENST00000468653 ERICH6BQ5W0A0 696 aa24.73■■□□□ 1.55
SMC4-209ENST00000468653 IGSF1Q8N6C5 1336 aa24.72■■□□□ 1.55
SMC4-209ENST00000468653 ARHGEF25Q86VW2 580 aa24.72■■□□□ 1.55
SMC4-209ENST00000468653 SPATA31A3Q5VYP0 1347 aa24.72■■□□□ 1.55
SMC4-209ENST00000468653 IL16Q14005 1332 aa24.7■■□□□ 1.55
SMC4-209ENST00000468653 LMOD3Q0VAK6 560 aa24.7■■□□□ 1.54
SMC4-209ENST00000468653 KDRP35968 1356 aa24.68■■□□□ 1.54
SMC4-209ENST00000468653 PHRF1Q9P1Y6 1649 aaKnown RBP24.68■■□□□ 1.54
SMC4-209ENST00000468653 MED1Q15648 1581 aaPredicted RBP24.67■■□□□ 1.54
SMC4-209ENST00000468653 CALD1Q05682 793 aaKnown RBP24.67■■□□□ 1.54
SMC4-209ENST00000468653 SOS2Q07890 1332 aaPredicted RBP24.66■■□□□ 1.54
SMC4-209ENST00000468653 ZC3H6P61129 1189 aaKnown RBP24.66■■□□□ 1.54
SMC4-209ENST00000468653 CABLES1Q8TDN4 633 aa24.64■■□□□ 1.53
SMC4-209ENST00000468653 FANCIQ9NVI1 1328 aa24.63■■□□□ 1.53
SMC4-209ENST00000468653 TSR2Q969E8 191 aaKnown RBP24.62■■□□□ 1.53
SMC4-209ENST00000468653 LTBP4Q8N2S1 1624 aa24.62■■□□□ 1.53
SMC4-209ENST00000468653 THUMPD2Q9BTF0 503 aaKnown RBP24.62■■□□□ 1.53
SMC4-209ENST00000468653 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.61■■□□□ 1.53
SMC4-209ENST00000468653 DLG5Q8TDM6 1919 aa24.61■■□□□ 1.53
SMC4-209ENST00000468653 PLIN1O60240 522 aa24.6■■□□□ 1.53
SMC4-209ENST00000468653 NBPF6Q5VWK0 638 aa24.6■■□□□ 1.53
SMC4-209ENST00000468653 USHBP1Q8N6Y0 703 aa24.6■■□□□ 1.53
SMC4-209ENST00000468653 ANKRD24Q8TF21 1146 aa24.6■■□□□ 1.53
SMC4-209ENST00000468653 NBPF4Q96M43 638 aa24.6■■□□□ 1.53
SMC4-209ENST00000468653 PPP4R2Q9NY27 417 aa24.6■■□□□ 1.53
SMC4-209ENST00000468653 LAS1LQ9Y4W2 734 aaKnown RBP24.6■■□□□ 1.53
SMC4-209ENST00000468653 GAS2L2Q8NHY3 880 aa24.59■■□□□ 1.53
SMC4-209ENST00000468653 FAM83GA6ND36 823 aa24.59■■□□□ 1.53
SMC4-209ENST00000468653 MTHFSDQ2M296 383 aaKnown RBP24.59■■□□□ 1.53
SMC4-209ENST00000468653 AXIN2Q9Y2T1 843 aa24.59■■□□□ 1.53
SMC4-209ENST00000468653 GNAI1P63096 354 aa24.57■■□□□ 1.52
SMC4-209ENST00000468653 LRRC59Q96AG4 307 aaKnown RBP24.57■■□□□ 1.52
SMC4-209ENST00000468653 IFT57Q9NWB7 429 aa24.57■■□□□ 1.52
SMC4-209ENST00000468653 EXOSC9Q06265 439 aaKnown RBP24.57■■□□□ 1.52
SMC4-209ENST00000468653 DCTN1Q14203 1278 aa24.57■■□□□ 1.52
SMC4-209ENST00000468653 BCAR3O75815 825 aa24.56■■□□□ 1.52
SMC4-209ENST00000468653 CT47B1P0C2W7 299 aaPredicted RBP24.56■■□□□ 1.52
SMC4-209ENST00000468653 NHSL1Q5SYE7 1610 aa24.55■■□□□ 1.52
SMC4-209ENST00000468653 HAP1P54257 671 aaPredicted RBP24.54■■□□□ 1.52
SMC4-209ENST00000468653 RTF1Q92541 710 aaKnown RBP24.54■■□□□ 1.52
SMC4-209ENST00000468653 RARSP54136 660 aaKnown RBP24.54■■□□□ 1.52
SMC4-209ENST00000468653 CRYBG1Q9Y4K1 1723 aa24.53■■□□□ 1.52
SMC4-209ENST00000468653 CPDO75976 1380 aa24.53■■□□□ 1.52
SMC4-209ENST00000468653 KIAA0232Q92628 1395 aa24.53■■□□□ 1.52
SMC4-209ENST00000468653 MCM10Q7L590 875 aa24.53■■□□□ 1.52
SMC4-209ENST00000468653 CFAP44Q96MT7 982 aa24.53■■□□□ 1.52
SMC4-209ENST00000468653 ERBB3P21860 1342 aa24.52■■□□□ 1.52
SMC4-209ENST00000468653 ZNF853P0CG23 659 aa24.52■■□□□ 1.52
SMC4-209ENST00000468653 CHRNA2Q15822 529 aa24.52■■□□□ 1.52
SMC4-209ENST00000468653 RGPD2P0DJD1 1756 aa24.5■■□□□ 1.51
SMC4-209ENST00000468653 MBIPQ9NS73 344 aa24.5■■□□□ 1.51
SMC4-209ENST00000468653 RGPD5Q99666 1765 aa24.5■■□□□ 1.51
SMC4-209ENST00000468653 HTATSF1O43719 755 aaKnown RBP24.49■■□□□ 1.51
SMC4-209ENST00000468653 EXOC6Q8TAG9 804 aa24.49■■□□□ 1.51
SMC4-209ENST00000468653 ABCC6O95255 1503 aa24.49■■□□□ 1.51
SMC4-209ENST00000468653 GNAT3A8MTJ3 354 aa24.49■■□□□ 1.51
SMC4-209ENST00000468653 ROBO1Q9Y6N7 1651 aa24.48■■□□□ 1.51
SMC4-209ENST00000468653 NCAPD2Q15021 1401 aa24.48■■□□□ 1.51
SMC4-209ENST00000468653 CSB-PGBD3P0DP91 1061 aa24.48■■□□□ 1.51
SMC4-209ENST00000468653 CANXP27824 592 aaKnown RBP24.48■■□□□ 1.51
SMC4-209ENST00000468653 PRDM11Q9NQV5 511 aa24.48■■□□□ 1.51
SMC4-209ENST00000468653 COL18A1P39060 1754 aa24.48■■□□□ 1.51
SMC4-209ENST00000468653 C20orf194Q5TEA3 1177 aa24.47■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms