RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 SPATA31D1Q6ZQQ2 1576 aa14.88□□□□□ -0.03
CD44-209ENST00000433892 GNAI1P63096 354 aa14.87□□□□□ -0.03
CD44-209ENST00000433892 CALD1Q05682 793 aaKnown RBP14.87□□□□□ -0.03
CD44-209ENST00000433892 C1orf115Q9H7X2 142 aa14.87□□□□□ -0.03
CD44-209ENST00000433892 MBIPQ9NS73 344 aa14.87□□□□□ -0.03
CD44-209ENST00000433892 ZBTB7BO15156 539 aaPredicted RBP14.87□□□□□ -0.03
CD44-209ENST00000433892 CHD1LQ86WJ1 897 aa14.87□□□□□ -0.03
CD44-209ENST00000433892 IFT57Q9NWB7 429 aa14.87□□□□□ -0.03
CD44-209ENST00000433892 AGLP35573 1532 aa14.87□□□□□ -0.03
CD44-209ENST00000433892 COG3Q96JB2 828 aa14.86□□□□□ -0.03
CD44-209ENST00000433892 DIP2BQ9P265 1576 aa14.86□□□□□ -0.03
CD44-209ENST00000433892 FAM83GA6ND36 823 aa14.85□□□□□ -0.03
CD44-209ENST00000433892 ZNF853P0CG23 659 aa14.85□□□□□ -0.03
CD44-209ENST00000433892 CCDC61Q9Y6R9 512 aa14.85□□□□□ -0.03
CD44-209ENST00000433892 REREQ9P2R6 1566 aa14.85□□□□□ -0.03
CD44-209ENST00000433892 ANKRD45Q5TZF3 282 aa14.85□□□□□ -0.03
CD44-209ENST00000433892 ARHGAP45Q92619 1136 aa14.85□□□□□ -0.03
CD44-209ENST00000433892 CDK12Q9NYV4 1490 aaPredicted RBP14.84□□□□□ -0.03
CD44-209ENST00000433892 TWISTNBQ3B726 338 aaPredicted RBP14.84□□□□□ -0.03
CD44-209ENST00000433892 C8orf58Q8NAV2 365 aa14.84□□□□□ -0.03
CD44-209ENST00000433892 AATKQ6ZMQ8 1374 aa14.84□□□□□ -0.03
CD44-209ENST00000433892 NRXN3Q9Y4C0 1643 aa14.84□□□□□ -0.03
CD44-209ENST00000433892 DCTN1Q14203 1278 aa14.83□□□□□ -0.03
CD44-209ENST00000433892 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.83□□□□□ -0.03
CD44-209ENST00000433892 CPS1P31327 1500 aa14.83□□□□□ -0.03
CD44-209ENST00000433892 CFAP44Q96MT7 982 aa14.83□□□□□ -0.04
CD44-209ENST00000433892 PTCH1Q13635 1447 aa14.83□□□□□ -0.04
CD44-209ENST00000433892 LMOD3Q0VAK6 560 aa14.82□□□□□ -0.04
CD44-209ENST00000433892 SIRT2Q8IXJ6 389 aa14.82□□□□□ -0.04
CD44-209ENST00000433892 ESF1Q9H501 851 aaKnown RBP14.82□□□□□ -0.04
CD44-209ENST00000433892 PIK3R4Q99570 1358 aa14.82□□□□□ -0.04
CD44-209ENST00000433892 GCC1Q96CN9 775 aa14.81□□□□□ -0.04
CD44-209ENST00000433892 CHMP4BQ9H444 224 aaKnown RBP14.81□□□□□ -0.04
CD44-209ENST00000433892 ABCC4O15439 1325 aa14.81□□□□□ -0.04
CD44-209ENST00000433892 PRR36Q9H6K5 1346 aa14.8□□□□□ -0.04
CD44-209ENST00000433892 BMP2KLQ5H9B9 411 aa14.8□□□□□ -0.04
CD44-209ENST00000433892 HSCBQ8IWL3 235 aa14.8□□□□□ -0.04
CD44-209ENST00000433892 RBM25P49756 843 aaKnown RBP14.8□□□□□ -0.04
CD44-209ENST00000433892 AEBP1Q8IUX7 1158 aa14.8□□□□□ -0.04
CD44-209ENST00000433892 CHMP5Q9NZZ3 219 aa14.79□□□□□ -0.04
CD44-209ENST00000433892 DLG5Q8TDM6 1919 aa14.78□□□□□ -0.04
CD44-209ENST00000433892 ZNF692Q9BU19 519 aaPredicted RBP14.78□□□□□ -0.04
CD44-209ENST00000433892 NUTM2FA1L443 756 aa14.78□□□□□ -0.04
CD44-209ENST00000433892 MCM4P33991 863 aa14.78□□□□□ -0.04
CD44-209ENST00000433892 HDGFP51858 240 aaKnown RBP14.77□□□□□ -0.04
CD44-209ENST00000433892 SULT6B1Q6IMI4 303 aa14.77□□□□□ -0.04
CD44-209ENST00000433892 SIRT1Q96EB6 747 aa14.77□□□□□ -0.04
CD44-209ENST00000433892 API5Q9BZZ5 524 aaKnown RBP14.77□□□□□ -0.04
CD44-209ENST00000433892 MON2Q7Z3U7 1717 aa14.77□□□□□ -0.04
CD44-209ENST00000433892 EIF4A2Q14240 407 aaKnown RBP14.77□□□□□ -0.05
CD44-209ENST00000433892 TECPR2O15040 1411 aa14.76□□□□□ -0.05
CD44-209ENST00000433892 KRT24Q2M2I5 525 aa14.76□□□□□ -0.05
CD44-209ENST00000433892 ROBO2Q9HCK4 1378 aa14.76□□□□□ -0.05
CD44-209ENST00000433892 C3P01024 1663 aa14.75□□□□□ -0.05
CD44-209ENST00000433892 TBC1D9Q6ZT07 1266 aa14.75□□□□□ -0.05
CD44-209ENST00000433892 MCM10Q7L590 875 aa14.75□□□□□ -0.05
CD44-209ENST00000433892 TTC21BQ7Z4L5 1316 aa14.74□□□□□ -0.05
CD44-209ENST00000433892 SNX21Q969T3 373 aa14.74□□□□□ -0.05
CD44-209ENST00000433892 GZF1Q9H116 711 aaPredicted RBP14.74□□□□□ -0.05
CD44-209ENST00000433892 ACEP12821 1306 aa14.74□□□□□ -0.05
CD44-209ENST00000433892 ITSN1Q15811 1721 aa14.73□□□□□ -0.05
CD44-209ENST00000433892 AKAP12Q02952 1782 aa14.73□□□□□ -0.05
CD44-209ENST00000433892 SOX12O15370 315 aa14.73□□□□□ -0.05
CD44-209ENST00000433892 ARXQ96QS3 562 aa14.73□□□□□ -0.05
CD44-209ENST00000433892 KIF2CQ99661 725 aa14.73□□□□□ -0.05
CD44-209ENST00000433892 TNRQ92752 1358 aa14.73□□□□□ -0.05
CD44-209ENST00000433892 KNDC1Q76NI1 1749 aa14.73□□□□□ -0.05
CD44-209ENST00000433892 HSP90AB2PQ58FF8 381 aa14.73□□□□□ -0.05
CD44-209ENST00000433892 TMEM2Q9UHN6 1383 aa14.73□□□□□ -0.05
CD44-209ENST00000433892 NCOA3Q9Y6Q9 1424 aa14.72□□□□□ -0.05
CD44-209ENST00000433892 HSP90AB1P08238 724 aaKnown RBP14.72□□□□□ -0.05
CD44-209ENST00000433892 CHL1O00533 1208 aa14.71□□□□□ -0.05
CD44-209ENST00000433892 DDIT3P35638 169 aa14.71□□□□□ -0.05
CD44-209ENST00000433892 TRAK2O60296 914 aa14.71□□□□□ -0.06
CD44-209ENST00000433892 CD2BP2O95400 341 aaKnown RBP14.71□□□□□ -0.06
CD44-209ENST00000433892 GSPT1P15170 499 aaKnown RBP14.71□□□□□ -0.06
CD44-209ENST00000433892 INTS3Q68E01 1043 aaKnown RBP14.71□□□□□ -0.06
CD44-209ENST00000433892 DCTPP1Q9H773 170 aa14.71□□□□□ -0.06
CD44-209ENST00000433892 L1TD1Q5T7N2 865 aaKnown RBP14.7□□□□□ -0.06
CD44-209ENST00000433892 PLEKHM2Q8IWE5 1019 aa14.7□□□□□ -0.06
CD44-209ENST00000433892 RBM42Q9BTD8 480 aaKnown RBP14.7□□□□□ -0.06
CD44-209ENST00000433892 ADAMTS13Q76LX8 1427 aa14.7□□□□□ -0.06
CD44-209ENST00000433892 KIF24Q5T7B8 1368 aa14.7□□□□□ -0.06
CD44-209ENST00000433892 C16orf71Q8IYS4 520 aaPredicted RBP14.69□□□□□ -0.06
CD44-209ENST00000433892 OVOS2A0A0J9YW53 1432 aa14.69□□□□□ -0.06
CD44-209ENST00000433892 OVOS2Q6IE36 1432 aa14.69□□□□□ -0.06
CD44-209ENST00000433892 NRKQ7Z2Y5 1582 aa14.69□□□□□ -0.06
CD44-209ENST00000433892 PLEKHG3A1L390 1219 aa14.69□□□□□ -0.06
CD44-209ENST00000433892 CDC45O75419 566 aa14.69□□□□□ -0.06
CD44-209ENST00000433892 LTKP29376 864 aa14.69□□□□□ -0.06
CD44-209ENST00000433892 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.68□□□□□ -0.06
CD44-209ENST00000433892 SLC26A8Q96RN1 970 aa14.68□□□□□ -0.06
CD44-209ENST00000433892 FOXD4L1Q9NU39 408 aa14.68□□□□□ -0.06
CD44-209ENST00000433892 MIS18AQ9NYP9 233 aa14.68□□□□□ -0.06
CD44-209ENST00000433892 GOLGA6L3A6NEY3 463 aa14.68□□□□□ -0.06
CD44-209ENST00000433892 HAP1P54257 671 aaPredicted RBP14.68□□□□□ -0.06
CD44-209ENST00000433892 ANKRD44Q8N8A2 993 aa14.68□□□□□ -0.06
CD44-209ENST00000433892 RGS12O14924 1447 aa14.68□□□□□ -0.06
CD44-209ENST00000433892 USP6P35125 1406 aa14.68□□□□□ -0.06
CD44-209ENST00000433892 HSP90AA1P07900 732 aaKnown RBP14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms