RNA–Protein interactions for RNA: ENST00000431429.1

HMGB1P27-201, Transcript of high mobility group box 1 pseudogene 27, humanhuman

BASIC

Gene HMGB1P27, Length 603 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P27-201ENST00000431429 USP17L12C9JPN9 530 aa5.73□□□□□ -1.49
HMGB1P27-201ENST00000431429 USP17L11C9JVI0 530 aa5.73□□□□□ -1.49
HMGB1P27-201ENST00000431429 USP17L21D6R901 530 aa5.73□□□□□ -1.49
HMGB1P27-201ENST00000431429 USP17L18D6R9N7 530 aa5.73□□□□□ -1.49
HMGB1P27-201ENST00000431429 USP17L22D6RA61 530 aa5.73□□□□□ -1.49
HMGB1P27-201ENST00000431429 USP17L17D6RBQ6 530 aa5.73□□□□□ -1.49
HMGB1P27-201ENST00000431429 USP17L19D6RCP7 530 aa5.73□□□□□ -1.49
HMGB1P27-201ENST00000431429 USP17L20D6RJB6 530 aa5.73□□□□□ -1.49
HMGB1P27-201ENST00000431429 USP17L24Q0WX57 530 aa5.73□□□□□ -1.49
HMGB1P27-201ENST00000431429 NCOA4Q13772 614 aa5.73□□□□□ -1.49
HMGB1P27-201ENST00000431429 TSGA10IPQ3SY00 556 aa5.73□□□□□ -1.49
HMGB1P27-201ENST00000431429 CDCA8Q53HL2 280 aa5.73□□□□□ -1.49
HMGB1P27-201ENST00000431429 TMEM164Q5U3C3 297 aa5.73□□□□□ -1.49
HMGB1P27-201ENST00000431429 RNF135Q8IUD6 432 aa5.73□□□□□ -1.49
HMGB1P27-201ENST00000431429 AEBP1Q8IUX7 1158 aa5.73□□□□□ -1.49
HMGB1P27-201ENST00000431429 STK32AQ8WU08 396 aa5.73□□□□□ -1.49
HMGB1P27-201ENST00000431429 FOXJ1Q92949 421 aa5.73□□□□□ -1.49
HMGB1P27-201ENST00000431429 CCDC85AQ96PX6 553 aaPredicted RBP5.73□□□□□ -1.49
HMGB1P27-201ENST00000431429 SLAIN2Q9P270 581 aa5.73□□□□□ -1.49
HMGB1P27-201ENST00000431429 ATP5J2-PTCD1G3V325 749 aa5.72□□□□□ -1.49
HMGB1P27-201ENST00000431429 SH3BP2P78314 561 aa5.72□□□□□ -1.49
HMGB1P27-201ENST00000431429 SLFNL1Q499Z3 407 aa5.72□□□□□ -1.49
HMGB1P27-201ENST00000431429 PHLDB3Q6NSJ2 640 aa5.72□□□□□ -1.49
HMGB1P27-201ENST00000431429 ZBTB33Q86T24 672 aa5.72□□□□□ -1.49
HMGB1P27-201ENST00000431429 BPHLQ86WA6 291 aaPredicted RBP5.72□□□□□ -1.49
HMGB1P27-201ENST00000431429 CCDC24Q8N4L8 307 aa5.72□□□□□ -1.49
HMGB1P27-201ENST00000431429 PCDH10Q9P2E7 1040 aa5.72□□□□□ -1.49
HMGB1P27-201ENST00000431429 MKRN1Q9UHC7 482 aaKnown RBP5.72□□□□□ -1.49
HMGB1P27-201ENST00000431429 NOVA2Q9UNW9 492 aaKnown RBP5.72□□□□□ -1.49
HMGB1P27-201ENST00000431429 PLA2G2CQ5R387 149 aa5.71□□□□□ -1.5
HMGB1P27-201ENST00000431429 DEPDC4Q8N2C3 294 aa5.71□□□□□ -1.5
HMGB1P27-201ENST00000431429 GNEQ9Y223 722 aaKnown RBP5.71□□□□□ -1.5
HMGB1P27-201ENST00000431429 RNF223E7ERA6 249 aa5.7□□□□□ -1.5
HMGB1P27-201ENST00000431429 ZBTB7BO15156 539 aaPredicted RBP5.7□□□□□ -1.5
HMGB1P27-201ENST00000431429 GIGYF1O75420 1035 aaPredicted RBP5.7□□□□□ -1.5
HMGB1P27-201ENST00000431429 CLDN10P78369 228 aa5.7□□□□□ -1.5
HMGB1P27-201ENST00000431429 DZIP3Q86Y13 1208 aaKnown RBP5.7□□□□□ -1.5
HMGB1P27-201ENST00000431429 CCDC125Q86Z20 511 aa5.7□□□□□ -1.5
HMGB1P27-201ENST00000431429 SEPT12Q8IYM1 358 aa5.7□□□□□ -1.5
HMGB1P27-201ENST00000431429 SIX5Q8N196 739 aa5.7□□□□□ -1.5
HMGB1P27-201ENST00000431429 ANKLE1Q8NAG6 615 aa5.7□□□□□ -1.5
HMGB1P27-201ENST00000431429 CCDC9Q9Y3X0 531 aaKnown RBP5.7□□□□□ -1.5
HMGB1P27-201ENST00000431429 MAP4K5Q9Y4K4 846 aa5.7□□□□□ -1.5
HMGB1P27-201ENST00000431429 SKOR1P84550 965 aa5.69□□□□□ -1.5
HMGB1P27-201ENST00000431429 KCNC4Q03721 635 aa5.69□□□□□ -1.5
HMGB1P27-201ENST00000431429 EML3Q32P44 896 aa5.69□□□□□ -1.5
HMGB1P27-201ENST00000431429 LINC01559Q495D7 138 aa5.69□□□□□ -1.5
HMGB1P27-201ENST00000431429 TXNDC2Q86VQ3 553 aa5.69□□□□□ -1.5
HMGB1P27-201ENST00000431429 CLP1Q92989 425 aaKnown RBP5.69□□□□□ -1.5
HMGB1P27-201ENST00000431429 CDCA7Q9BWT1 371 aaPredicted RBP5.69□□□□□ -1.5
HMGB1P27-201ENST00000431429 CARD14Q9BXL6 1004 aa5.69□□□□□ -1.5
HMGB1P27-201ENST00000431429 CDV3Q9UKY7 258 aaKnown RBP5.69□□□□□ -1.5
HMGB1P27-201ENST00000431429 KIAA1024Q9UPX6 916 aa5.69□□□□□ -1.5
HMGB1P27-201ENST00000431429 MAGEB6P1A0A0J9YX57 407 aa5.68□□□□□ -1.5
HMGB1P27-201ENST00000431429 PPEF1O14829 653 aaPredicted RBP5.68□□□□□ -1.5
HMGB1P27-201ENST00000431429 SSFA2P28290 1259 aa5.68□□□□□ -1.5
HMGB1P27-201ENST00000431429 WNT7BP56706 349 aa5.68□□□□□ -1.5
HMGB1P27-201ENST00000431429 TRIM32Q13049 653 aa5.68□□□□□ -1.5
HMGB1P27-201ENST00000431429 ANKMY2Q8IV38 441 aa5.68□□□□□ -1.5
HMGB1P27-201ENST00000431429 LARGE2Q8N3Y3 721 aa5.68□□□□□ -1.5
HMGB1P27-201ENST00000431429 HCSTQ9UBK5 93 aa5.68□□□□□ -1.5
HMGB1P27-201ENST00000431429 PCDHGA11Q9Y5H2 935 aa5.68□□□□□ -1.5
HMGB1P27-201ENST00000431429 RASA1P20936 1047 aa5.67□□□□□ -1.5
HMGB1P27-201ENST00000431429 RPIAP49247 311 aa5.67□□□□□ -1.5
HMGB1P27-201ENST00000431429 SWI5Q1ZZU3 235 aa5.67□□□□□ -1.5
HMGB1P27-201ENST00000431429 NBPF20Q3BBV1 942 aa5.67□□□□□ -1.5
HMGB1P27-201ENST00000431429 RNF20Q5VTR2 975 aa5.67□□□□□ -1.5
HMGB1P27-201ENST00000431429 TRIM50Q86XT4 487 aa5.67□□□□□ -1.5
HMGB1P27-201ENST00000431429 OGFOD1Q8N543 542 aa5.67□□□□□ -1.5
HMGB1P27-201ENST00000431429 MPNDQ8N594 471 aa5.67□□□□□ -1.5
HMGB1P27-201ENST00000431429 RGS22Q8NE09 1264 aa5.67□□□□□ -1.5
HMGB1P27-201ENST00000431429 EMID1Q96A84 441 aaPredicted RBP5.67□□□□□ -1.5
HMGB1P27-201ENST00000431429 SLC10A4Q96EP9 437 aa5.67□□□□□ -1.5
HMGB1P27-201ENST00000431429 GZF1Q9H116 711 aaPredicted RBP5.67□□□□□ -1.5
HMGB1P27-201ENST00000431429 DOLKQ9UPQ8 538 aa5.67□□□□□ -1.5
HMGB1P27-201ENST00000431429 VARSP26640 1264 aaKnown RBP5.66□□□□□ -1.5
HMGB1P27-201ENST00000431429 ATP1A2P50993 1020 aa5.66□□□□□ -1.5
HMGB1P27-201ENST00000431429 IFFO2Q5TF58 517 aa5.66□□□□□ -1.5
HMGB1P27-201ENST00000431429 LARP1Q6PKG0 1096 aaKnown RBP5.66□□□□□ -1.5
HMGB1P27-201ENST00000431429 SPNS2Q8IVW8 549 aa5.66□□□□□ -1.5
HMGB1P27-201ENST00000431429 C1orf216Q8TAB5 229 aa5.66□□□□□ -1.5
HMGB1P27-201ENST00000431429 RNF166Q96A37 237 aaPredicted RBP5.66□□□□□ -1.5
HMGB1P27-201ENST00000431429 CDK15Q96Q40 435 aa5.66□□□□□ -1.5
HMGB1P27-201ENST00000431429 DNAAF2Q9NVR5 837 aaKnown RBP5.66□□□□□ -1.5
HMGB1P27-201ENST00000431429 NOD1Q9Y239 953 aa5.66□□□□□ -1.5
HMGB1P27-201ENST00000431429 IVNS1ABPQ9Y6Y0 642 aa5.66□□□□□ -1.5
HMGB1P27-201ENST00000431429 DPYDQ12882 1025 aa5.65□□□□□ -1.5
HMGB1P27-201ENST00000431429 B4GALNT3Q6L9W6 998 aa5.65□□□□□ -1.5
HMGB1P27-201ENST00000431429 FAM200AQ8TCP9 573 aa5.65□□□□□ -1.5
HMGB1P27-201ENST00000431429 SIAH2O43255 324 aa5.64□□□□□ -1.51
HMGB1P27-201ENST00000431429 MFAP1P55081 439 aaKnown RBP5.64□□□□□ -1.51
HMGB1P27-201ENST00000431429 GTF2IP78347 998 aa5.64□□□□□ -1.51
HMGB1P27-201ENST00000431429 OCLNQ16625 522 aa5.64□□□□□ -1.51
HMGB1P27-201ENST00000431429 INTS6LQ5JSJ4 861 aaKnown RBP5.64□□□□□ -1.51
HMGB1P27-201ENST00000431429 TMCO4Q5TGY1 634 aa5.64□□□□□ -1.51
HMGB1P27-201ENST00000431429 PPP1R18Q6NYC8 613 aa5.64□□□□□ -1.51
HMGB1P27-201ENST00000431429 SND1Q7KZF4 910 aaKnown RBP eCLIP5.64□□□□□ -1.51
HMGB1P27-201ENST00000431429 KCTD15Q96SI1 283 aaPredicted RBP5.64□□□□□ -1.51
HMGB1P27-201ENST00000431429 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.64□□□□□ -1.51
HMGB1P27-201ENST00000431429 M0R2N6 131 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms