RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 UBE2Q2Q8WVN8 375 aa7.22□□□□□ -1.25
CCDC88A-203ENST00000412148 SPATA31D1Q6ZQQ2 1576 aa7.22□□□□□ -1.25
CCDC88A-203ENST00000412148 CPSF1Q10570 1443 aaKnown RBP7.22□□□□□ -1.25
CCDC88A-203ENST00000412148 AATKQ6ZMQ8 1374 aa7.22□□□□□ -1.25
CCDC88A-203ENST00000412148 CALD1Q05682 793 aaKnown RBP7.22□□□□□ -1.25
CCDC88A-203ENST00000412148 TERF2IPQ9NYB0 399 aa7.22□□□□□ -1.25
CCDC88A-203ENST00000412148 TRAK1Q9UPV9 953 aa7.22□□□□□ -1.25
CCDC88A-203ENST00000412148 TOPAZ1Q8N9V7 1692 aa7.21□□□□□ -1.25
CCDC88A-203ENST00000412148 IFNLR1Q8IU57 520 aaPredicted RBP7.21□□□□□ -1.26
CCDC88A-203ENST00000412148 XRCC6P12956 609 aaKnown RBP eCLIP7.21□□□□□ -1.26
CCDC88A-203ENST00000412148 HSCBQ8IWL3 235 aa7.21□□□□□ -1.26
CCDC88A-203ENST00000412148 SSH1Q8WYL5 1049 aa7.21□□□□□ -1.26
CCDC88A-203ENST00000412148 NRXN3Q9Y4C0 1643 aa7.21□□□□□ -1.26
CCDC88A-203ENST00000412148 U2AF1L5P0DN76 240 aaPredicted RBP7.2□□□□□ -1.26
CCDC88A-203ENST00000412148 U2AF1Q01081 240 aaKnown RBP eCLIP7.2□□□□□ -1.26
CCDC88A-203ENST00000412148 EXOSC9Q06265 439 aaKnown RBP7.2□□□□□ -1.26
CCDC88A-203ENST00000412148 SMC4Q9NTJ3 1288 aa7.2□□□□□ -1.26
CCDC88A-203ENST00000412148 RIMS1Q86UR5 1692 aaKnown RBP7.2□□□□□ -1.26
CCDC88A-203ENST00000412148 ABCC4O15439 1325 aa7.2□□□□□ -1.26
CCDC88A-203ENST00000412148 RAB3GAP1Q15042 981 aa7.2□□□□□ -1.26
CCDC88A-203ENST00000412148 TNNQ9UQP3 1299 aa7.2□□□□□ -1.26
CCDC88A-203ENST00000412148 CPS1P31327 1500 aa7.2□□□□□ -1.26
CCDC88A-203ENST00000412148 FMN2Q9NZ56 1722 aa7.19□□□□□ -1.26
CCDC88A-203ENST00000412148 TRAK2O60296 914 aa7.19□□□□□ -1.26
CCDC88A-203ENST00000412148 SLKQ9H2G2 1235 aaPredicted RBP7.19□□□□□ -1.26
CCDC88A-203ENST00000412148 RRP7AQ9Y3A4 280 aaKnown RBP7.19□□□□□ -1.26
CCDC88A-203ENST00000412148 USP54Q70EL1 1684 aa7.19□□□□□ -1.26
CCDC88A-203ENST00000412148 EDC4Q6P2E9 1401 aaKnown RBP7.19□□□□□ -1.26
CCDC88A-203ENST00000412148 FYB1O15117 783 aa7.19□□□□□ -1.26
CCDC88A-203ENST00000412148 ZNF853P0CG23 659 aa7.19□□□□□ -1.26
CCDC88A-203ENST00000412148 CHD1LQ86WJ1 897 aa7.19□□□□□ -1.26
CCDC88A-203ENST00000412148 HOXD11P31277 338 aaPredicted RBP7.18□□□□□ -1.26
CCDC88A-203ENST00000412148 GBP4Q96PP9 640 aa7.18□□□□□ -1.26
CCDC88A-203ENST00000412148 TECPR2O15040 1411 aa7.18□□□□□ -1.26
CCDC88A-203ENST00000412148 DIAPH1O60610 1272 aaKnown RBP7.18□□□□□ -1.26
CCDC88A-203ENST00000412148 TMEM57Q8N5G2 664 aa7.18□□□□□ -1.26
CCDC88A-203ENST00000412148 KIF2CQ99661 725 aa7.18□□□□□ -1.26
CCDC88A-203ENST00000412148 RRAGDQ9NQL2 400 aaPredicted RBP7.18□□□□□ -1.26
CCDC88A-203ENST00000412148 IFT57Q9NWB7 429 aa7.18□□□□□ -1.26
CCDC88A-203ENST00000412148 ZBTB7BO15156 539 aaPredicted RBP7.18□□□□□ -1.26
CCDC88A-203ENST00000412148 NOB1Q9ULX3 412 aaKnown RBP7.18□□□□□ -1.26
CCDC88A-203ENST00000412148 GRPEL1Q9HAV7 217 aa7.17□□□□□ -1.26
CCDC88A-203ENST00000412148 LRRC37A3O60309 1634 aa7.17□□□□□ -1.26
CCDC88A-203ENST00000412148 NEUROD2Q15784 382 aa7.17□□□□□ -1.26
CCDC88A-203ENST00000412148 TMEM132EQ6IEE7 984 aa7.17□□□□□ -1.26
CCDC88A-203ENST00000412148 ITPRIPQ8IWB1 547 aa7.17□□□□□ -1.26
CCDC88A-203ENST00000412148 SIRT1Q96EB6 747 aa7.17□□□□□ -1.26
CCDC88A-203ENST00000412148 TERF1P54274 439 aa7.16□□□□□ -1.26
CCDC88A-203ENST00000412148 RIPK4P57078 832 aa7.16□□□□□ -1.26
CCDC88A-203ENST00000412148 LMOD3Q0VAK6 560 aa7.16□□□□□ -1.26
CCDC88A-203ENST00000412148 HDGFL2Q7Z4V5 671 aaPredicted RBP7.16□□□□□ -1.26
CCDC88A-203ENST00000412148 MRPL50Q8N5N7 158 aaKnown RBP7.16□□□□□ -1.26
CCDC88A-203ENST00000412148 GNAI1P63096 354 aa7.16□□□□□ -1.26
CCDC88A-203ENST00000412148 NFE2L2Q16236 605 aa7.16□□□□□ -1.26
CCDC88A-203ENST00000412148 TSR2Q969E8 191 aaKnown RBP7.16□□□□□ -1.26
CCDC88A-203ENST00000412148 PPP1R9BQ96SB3 815 aa7.16□□□□□ -1.26
CCDC88A-203ENST00000412148 BCL2L13Q9BXK5 485 aa7.16□□□□□ -1.26
CCDC88A-203ENST00000412148 VAMP4O75379 141 aa7.15□□□□□ -1.26
CCDC88A-203ENST00000412148 MYCNP04198 464 aaPredicted RBP7.15□□□□□ -1.26
CCDC88A-203ENST00000412148 MFAP1P55081 439 aaKnown RBP7.15□□□□□ -1.26
CCDC88A-203ENST00000412148 HS1BP3Q53T59 392 aa7.15□□□□□ -1.26
CCDC88A-203ENST00000412148 KIAA0232Q92628 1395 aa7.15□□□□□ -1.26
CCDC88A-203ENST00000412148 FAM208AQ9UK61 1670 aaKnown RBP7.15□□□□□ -1.26
CCDC88A-203ENST00000412148 K7ELQ4 463 aaPredicted RBP7.15□□□□□ -1.27
CCDC88A-203ENST00000412148 TNPO1Q92973 898 aaKnown RBP7.15□□□□□ -1.27
CCDC88A-203ENST00000412148 IL17RAQ96F46 866 aa7.15□□□□□ -1.27
CCDC88A-203ENST00000412148 CABP2Q9NPB3 220 aa7.15□□□□□ -1.27
CCDC88A-203ENST00000412148 A2ML1A8K2U0 1454 aa7.15□□□□□ -1.27
CCDC88A-203ENST00000412148 API5Q9BZZ5 524 aaKnown RBP7.14□□□□□ -1.27
CCDC88A-203ENST00000412148 ATP10DQ9P241 1426 aa7.14□□□□□ -1.27
CCDC88A-203ENST00000412148 RIMS2Q9UQ26 1411 aa7.14□□□□□ -1.27
CCDC88A-203ENST00000412148 IDI1Q13907 227 aa7.14□□□□□ -1.27
CCDC88A-203ENST00000412148 KLHL40Q2TBA0 621 aa7.14□□□□□ -1.27
CCDC88A-203ENST00000412148 ARID3AQ99856 593 aa7.14□□□□□ -1.27
CCDC88A-203ENST00000412148 XRN1Q8IZH2 1706 aaKnown RBP7.14□□□□□ -1.27
CCDC88A-203ENST00000412148 CDC45O75419 566 aa7.14□□□□□ -1.27
CCDC88A-203ENST00000412148 CYP2E1P05181 493 aaPredicted RBP7.14□□□□□ -1.27
CCDC88A-203ENST00000412148 TNNT2P45379 298 aaPredicted RBP7.14□□□□□ -1.27
CCDC88A-203ENST00000412148 ZNF445P59923 1031 aa7.14□□□□□ -1.27
CCDC88A-203ENST00000412148 RABEP1Q15276 862 aa7.14□□□□□ -1.27
CCDC88A-203ENST00000412148 INTS3Q68E01 1043 aaKnown RBP7.14□□□□□ -1.27
CCDC88A-203ENST00000412148 RGS12O14924 1447 aa7.13□□□□□ -1.27
CCDC88A-203ENST00000412148 CRYBG1Q9Y4K1 1723 aa7.13□□□□□ -1.27
CCDC88A-203ENST00000412148 CCDC173Q0VFZ6 552 aa7.13□□□□□ -1.27
CCDC88A-203ENST00000412148 CWC22Q9HCG8 908 aaKnown RBP7.13□□□□□ -1.27
CCDC88A-203ENST00000412148 ARHGEF10O15013 1369 aa7.13□□□□□ -1.27
CCDC88A-203ENST00000412148 ESPNB1AK53 854 aa7.13□□□□□ -1.27
CCDC88A-203ENST00000412148 EPB41L2O43491 1005 aaKnown RBP7.13□□□□□ -1.27
CCDC88A-203ENST00000412148 RRP9O43818 475 aaKnown RBP7.13□□□□□ -1.27
CCDC88A-203ENST00000412148 NUCB2P80303 420 aa7.13□□□□□ -1.27
CCDC88A-203ENST00000412148 TBC1D9Q6ZT07 1266 aa7.13□□□□□ -1.27
CCDC88A-203ENST00000412148 DCTPP1Q9H773 170 aa7.13□□□□□ -1.27
CCDC88A-203ENST00000412148 POLKQ9UBT6 870 aa7.13□□□□□ -1.27
CCDC88A-203ENST00000412148 AK9Q5TCS8 1911 aa7.13□□□□□ -1.27
CCDC88A-203ENST00000412148 GOLGA6L22H0YM25 854 aa7.12□□□□□ -1.27
CCDC88A-203ENST00000412148 CHGAP10645 457 aaKnown RBP7.12□□□□□ -1.27
CCDC88A-203ENST00000412148 IL13P35225 146 aa7.12□□□□□ -1.27
CCDC88A-203ENST00000412148 DIP2AQ14689 1571 aa7.12□□□□□ -1.27
CCDC88A-203ENST00000412148 RTL1A6NKG5 1358 aa7.12□□□□□ -1.27
CCDC88A-203ENST00000412148 DCAF8L1A6NGE4 600 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms